| 2011 |
CDK5RAP3 is a novel binding partner of PAK4 and enhances PAK4 kinase activity; siRNA-mediated knockdown of PAK4 in CDK5RAP3-overexpressing HCC cells reversed the enhanced cell invasiveness, establishing PAK4 as essential for CDK5RAP3-mediated metastatic function. |
Co-immunoprecipitation (binding partner identification), kinase activity assay (PAK4 activation), siRNA knockdown with cell invasion assay (epistasis) |
Cancer research |
Medium |
21385901
|
| 2012 |
CDK5RAP3 binds directly to the p14ARF promoter in vivo and represses p14ARF transcription; knockdown of p14ARF in CDK5RAP3-depleted HCC cells rescued invasiveness, placing CDK5RAP3 upstream of p14ARF in a transcriptional repression pathway. |
Chromatin immunoprecipitation (promoter binding), RT-PCR and Western blot (mRNA/protein levels), siRNA epistasis (cell invasion assay) |
PloS one |
Medium |
22860085
|
| 2003 |
CDK5RAP3 (IC53-2) physically binds the CDK5 activator p35 in vitro, confirming it as a CDK5 activator-binding protein. |
In vitro association assay (pulldown) |
Cell research |
Low |
12737517
|
| 2016 |
CDK5RAP3 suppresses phosphorylation of GSK-3β at Ser9, thereby promoting phosphorylation (Ser37/Thr41) and subsequent proteasomal degradation of β-catenin, reducing Wnt/β-catenin signaling in gastric cancer cells. |
Western blot (phosphorylation status of GSK-3β, β-catenin), overexpression and knockdown in cell lines with proliferation/invasion assays |
Cancer letters |
Medium |
27793695 29540196
|
| 2018 |
CDK5RAP3 represses AKT phosphorylation (Ser473), which in turn promotes GSK-3β phosphorylation (Ser9) and β-catenin suppression, placing CDK5RAP3 upstream of AKT in the Wnt/β-catenin cascade in gastric cancer. |
Western blot in stable CDK5RAP3 overexpression/knockdown gastric cancer cell lines; correlation analysis in 295 patient tumor samples by IHC and Western blot |
Journal of experimental & clinical cancer research |
Medium |
29540196
|
| 2019 |
CDK5RAP3 interacts with UFL1 (the E3 ligase of the UFM1 conjugation system) in vivo, and loss of CDK5RAP3 alters the ufmylation profile in liver cells, identifying CDK5RAP3 as a substrate adaptor for UFMylation. |
Co-immunoprecipitation (CDK5RAP3–UFL1 interaction in mouse liver); ufmylation profile analysis in knockout liver cells |
Development (Cambridge, England) |
Medium |
30635284
|
| 2019 |
CDK5RAP3 inhibits angiogenesis by suppressing the AKT/HIF-1α/VEGFA signaling axis; CDK5RAP3 knockdown in gastric neuroendocrine carcinoma cells increased VEGFA secretion and promoted endothelial cell migration and tube formation, while overexpression had the opposing effect. |
Knockdown/overexpression with tube formation assay, ELISA (VEGFA), Western blot (AKT, HIF-1α), in vivo xenograft angiogenesis assay |
Cancer cell international |
Medium |
31728130
|
| 2019 |
CDK5RAP3 functions as a co-factor for the transcription factor STAT3; CDK5RAP3 binds to STAT3-regulated genomic loci in a STAT3-dependent manner, enhancing STAT3-dependent gene expression; silencing CDK5RAP3 reduces STAT3-mediated clonogenesis and migration. |
RNA-interference screen, ChIP (CDK5RAP3 at STAT3 genomic loci), knockdown with clonogenesis and migration assays |
Neoplasia (New York, N.Y.) |
Medium |
31765941
|
| 2020 |
CDK5RAP3 expression is regulated by ERK signaling; ERK inhibition phenocopies CDK5RAP3 overexpression in reducing gastric cancer stem cell self-renewal and EMT, placing CDK5RAP3 downstream of ERK. |
ERK inhibitor treatment with Western blot (CDK5RAP3 levels), spheroid formation and invasion assays in cell lines and mouse organoids |
British journal of cancer |
Low |
32606358
|
| 2020 |
CDK5RAP3 physically interacts with HSF1 (heat shock factor 1) and HSP90, co-localizes with HSF1 in cytoplasm and nucleus, and its deletion impairs nucleoplasmic translocation and trimer formation of HSF1 during heat stress, identifying CDK5RAP3 as a nucleoplasmic shuttle regulating HSF1-mediated heat stress response. |
Co-immunoprecipitation and co-immunofluorescence (CDK5RAP3–HSF1, CDK5RAP3–HSP90 interactions), conditional knockout mice and MEFs with heat stress phenotyping, Western blot (HSP expression, ER stress markers) |
International journal of molecular sciences |
Medium |
33182370
|
| 2021 |
Cdk5rap3 deficiency in intestinal epithelial cells causes near-complete loss of Paneth cells with downregulation of transcription factors Gfi1 and Sox9, establishing Cdk5rap3 as essential for Paneth cell fate specification; inducible acute deletion in mature Paneth cells leads to disassembly of the rough endoplasmic reticulum and abnormal zymogen granules. |
Intestinal epithelial cell-specific and Paneth cell-specific conditional knockout mice; inducible deletion; histology; immunofluorescence; Western blot (Gfi1, Sox9) |
Cell death & disease |
High |
33504792
|
| 2022 |
CDK5RAP3 interacts with RPL26 (ribosomal protein L26); loss of CDK5RAP3 or RPL26 inhibits mTOR/p-mTOR signaling and induces autophagy, linking CDK5RAP3 to regulation of the mTOR pathway through RPL26. CDK5RAP3 deficiency also blocks the cell cycle at G2/M by downregulating CDK1 and Cyclin B1. |
Co-immunoprecipitation (CDK5RAP3–RPL26), MEFs from conditional knockout mice, MCF7 knockdown; Western blot (mTOR, CDK1, CCNB1); flow cytometry (cell cycle, apoptosis); autophagy markers |
Cell proliferation |
Medium |
35509151
|
| 2022 |
CDK5RAP3 is a novel BRCA2 helical domain-interacting protein; CDK5RAP3 depletion upregulates homologous recombination and single-strand annealing, and reduces spontaneous and DNA damage-induced genomic instability, indicating that CDK5RAP3 negatively regulates double-strand break repair in S-phase. |
Co-immunoprecipitation (CDK5RAP3–BRCA2 helical domain), HR/SSA repair assays, genomic instability assays after CDK5RAP3 depletion |
Cancers |
Medium |
35053516
|
| 2024 |
CDK5RAP3 deficiency interferes with the UFMylation system and triggers ER-phagy (endoplasmic reticulum-selective autophagy); CDK5RAP3 also maintains the stability of the master transcription factor MEIS2 in neuroblastoma. |
Knockdown/overexpression in NB cell lines and xenografts, Western blot (UFMylation components, MEIS2), ER-phagy assays |
Cancer letters |
Low |
38636893
|
| 2024 |
TSPAN6 promotes glioblastoma progression by interacting with CDK5RAP3 and activating the STAT3 signaling pathway. |
Co-immunoprecipitation (TSPAN6–CDK5RAP3 interaction), overexpression/knockdown with proliferation, migration and STAT3 pathway readouts |
International journal of biological sciences |
Low |
38725860
|
| 2024 |
CDK5RAP3 inhibits p38MAPK phosphorylation and activity via mediating a p38 interaction with wild-type p53-induced phosphatase 1 (Wip1); under hypoxia, CDK5RAP3 expression decreases in endothelial cells, releasing this inhibition and promoting p38MAPK-dependent angiogenesis. |
CDK5RAP3 knockdown in HUVECs under hypoxia, Western blot (p38MAPK phosphorylation), tube formation, migration and proliferation assays, VEGF ELISA |
International heart journal |
Low |
39085114
|
| 2025 |
NXF3 facilitates nuclear export of CDK5RAP3 mRNA, thereby increasing CDK5RAP3 protein levels and promoting cell cycle progression in gastric cancer cells. |
RNA immunoprecipitation sequencing (RIP-Seq), nuclear-cytoplasmic transcriptomics, NXF3 knockdown with Western blot (CDK5RAP3 protein) and cell cycle assays |
Cellular and molecular life sciences |
Low |
40032765
|
| 2025 |
Cdk5rap3 deficiency in pancreatic acinar cells increases lysosomal hydrolase cathepsin B and LAMP1, elevating lysosomal activity; it also causes substantial changes to rough ER structure and increases selective ER membrane protein CLIMP63, identifying Cdk5rap3 as a regulator of lysosomal and ER membrane homeostasis essential for acinar cell survival. |
Acinar cell-specific knockout mice, tissue histology, Western blot and immunofluorescence (cathepsin B, LAMP1, CLIMP63), electron microscopy (ER structure), primary cell culture |
American journal of physiology. Cell physiology |
Medium |
40637352
|
| 2025 |
CDK5RAP3 deficiency in neurons increases N-glycosylase proteins RPN1 and ALG2 as well as total glycoprotein levels, causing ER stress and encephalo-dysplasia; CDK5RAP3 normally promotes proteolytic and autophagic degradation of RPN1 and ALG2 to maintain glycoprotein balance. |
Neuron-specific CDK5RAP3 knockout mice (Nestin-Cre), transcriptome sequencing, Western blot (RPN1, ALG2, glycoproteins, ER stress markers), MEF in vitro deletion (ROSA26-ERT2Cre) |
Cell death discovery |
Medium |
40188151
|
| 2026 |
Only full-length CDK5RAP3 (but not C-terminal alternative isoforms) binds UFL1; CDK5RAP3 deficiency impairs UFMylation of known substrates RPL26 and UFBP1, and CDK5RAP3 acts as an upstream regulator of UFL1 S462 phosphorylation (linked to ATM signaling). Antisense oligonucleotide-mediated restoration of full-length CDK5RAP3 reversed proteomic/phosphoproteomic dysregulation including extracellular matrix organisation, mitotic/genome stability, and cytoskeletal pathways. |
Co-immunoprecipitation (full-length vs. C-terminal isoforms with UFL1), Western blot, proteomics and phosphoproteomics in patient amniocytes, RT-PCR (splice variant), ASO rescue experiment |
Acta neuropathologica |
High |
42045457
|
| 2026 |
CDK5RAP3 interacts with SMAD4 and CEBPB in Leydig cells; hCG stimulation triggers CDK5RAP3 nuclear translocation; CDK5RAP3 knockdown reduces expression of steroidogenic regulators STAR, CYP11A1, CYP17A1, and HSD3B and impairs testosterone production; BMP pathway inhibition (Noggin) rescues the testosterone deficit caused by CDK5RAP3 loss, placing CDK5RAP3 upstream of BMP signaling in steroidogenesis. |
Immunoprecipitation-mass spectrometry (IP-MS, interaction identification), AAV2/9-mediated in vivo knockdown, primary Leydig cell culture, Western blot (STAR, CYP enzymes), serum testosterone ELISA, Noggin epistasis experiment |
International journal of molecular sciences |
Medium |
41596239
|
| 2009 |
Endothelium-specific overexpression of IC53 (CDK5RAP3) in transgenic mice decreases eNOS expression and activity, reduces NO production, impairs endothelium-dependent vasodilation, and elevates systolic blood pressure; inhibition of IC53 in HUVECs upregulates eNOS activity. |
VE-cadherin promoter-driven transgenic mouse model, blood pressure measurement, eNOS activity assay, NO measurement, IC53 siRNA knockdown in HUVECs |
Cardiovascular research |
Medium |
19541669
|
| 2019 |
CDK5RAP3 depletion in liver cells disrupts UFMylation homeostasis and triggers endoplasmic reticulum stress with activation of unfolded protein responses; this ER stress is exacerbated after partial hepatectomy in liver-specific Cdk5rap3 knockout mice and is associated with impaired hepatocyte proliferation and delayed liver regeneration. |
Liver-specific CKO mice, partial hepatectomy model, Western blot (ER stress/UPR markers, ufmylation substrates), hepatocyte proliferation assays (BrdU/Ki67) |
Development (Cambridge, England) / The American journal of pathology |
Medium |
30635284 32926856
|
| 2023 |
CDK5RAP3 knockdown in bovine mammary epithelial cells inhibits autophagolysosome degradation, activates the NF-κB pathway and NLRP3 inflammasome (upregulating NLRP3, IL-1β, IL-6, cleaved caspase-1), and triggers pyroptosis; accumulation of LC3B and p62 confirms the autophagy block. |
CDK5RAP3 knockdown in BMECs, Western blot (NLRP3, IL-1β, caspase-1, LC3B, p62, NF-κB), cytokine measurement, cell death assays |
International journal of biological macromolecules |
Low |
36806767
|