| 1997 |
BHLHE40 (Stra13) encodes a bHLH protein that represses activated transcription through an alpha-helix rich C-terminal domain, in part by interaction with general factors of the basal transcription machinery, and does not bind the canonical E-box or N-box motifs recognized by other bHLH proteins. |
Transient transfection reporter assays, protein-protein interaction studies, overexpression in P19 cells |
Genes & development |
High |
9284045
|
| 2001 |
Stra13 (BHLHE40) interacts physically with the bHLHZip protein USF through its C-terminal repression domain and the DNA-binding domain of USF; co-expression causes mutual functional antagonism, with USF abrogating Stra13-mediated repression and Stra13 inhibiting USF DNA binding and transactivation. |
Yeast two-hybrid screen, co-immunoprecipitation, reporter assays, EMSA |
Oncogene |
High |
11498797
|
| 2001 |
BHLHE40 (Stra13) is required for proper CD4+ T cell activation and elimination of activated lymphocytes; Stra13-deficient mice develop autoimmune disease with accumulation of activated T and B cells, indicating a key role in lymphocyte homeostasis. |
Stra13-knockout mouse model, in vivo lymphocyte phenotyping, immunology assays |
Nature immunology |
High |
11668339
|
| 2002 |
HIF-1α and HIF-1β directly bind functional hypoxia response elements (HREs) in the BHLHE40 (DEC1) promoter region (-524 to -401), activating its transcription in response to hypoxia or CoCl2. |
Luciferase reporter assays, EMSA showing HIF-1α/β binding to HRE, deletion/mutation analysis |
The Journal of biological chemistry |
High |
12354771
|
| 2002 |
DEC1 (BHLHE40) promotes chondrocyte differentiation when overexpressed in ATDC5 cells, antagonizes the inhibitory action of PTH/PTHrP, and induces expression of type II collagen, Indian hedgehog, and Runx2. |
Forced expression in ATDC5 cells and bone marrow mesenchymal stem cells, gene expression analysis |
The Journal of biological chemistry |
Medium |
12384505
|
| 2003 |
DEC1 (BHLHE40) directly binds an E-box motif in the proximal promoter of DEC2 and represses DEC2 transcription; DNA-binding-defective DEC1 mutants lose this repressive activity. |
Reporter assays with deletion/site-directed mutants, stable transfectants with tetracycline-inducible DEC1 |
The Journal of biological chemistry |
High |
12624110
|
| 2003 |
BHLHE40 (Stra13) circadian expression in peripheral tissues is driven by the CLOCK-BMAL1 heterodimer via a response element in the proximal promoter; Stra13 in turn represses its own CLOCK-BMAL1-driven transcription (autorepression), and CRY1 strongly represses CLOCK-BMAL1-dependent Stra13 activation. |
Reporter assays, microarray gene expression in Stra13-/- mice liver, genetic knockout |
The Journal of biological chemistry |
High |
14581485
|
| 2004 |
DEC1 (BHLHE40) represses the mPer1 promoter through direct E-box binding rather than through protein-protein interaction with Bmal1; DNA-binding mutants of DEC1 that retain Bmal1 interaction cannot repress the mPer1 promoter. |
Reporter assays, yeast two-hybrid, EMSA, mutational analysis |
The Biochemical journal |
High |
15193144
|
| 2004 |
STRA13 (BHLHE40) interacts with phosphorylated (active) STAT3α and STAT3β via its HLH and C-terminal regions; STRA13 can activate transcription from STAT-dependent elements and modulates the transcriptional outcome of STAT3 on the Fas promoter. |
Yeast two-hybrid, co-immunoprecipitation, luciferase reporter assays |
Journal of molecular biology |
High |
15223310
|
| 2005 |
STRA13 (BHLHE40) interacts with MSP58 via its basic domain (with MSP58's FHA domain required), and complex formation protects both proteins from proteasome-mediated degradation; together they synergistically co-operate in STRA13 promoter-driven transcription repression. |
Yeast two-hybrid, Co-IP, phospho-peptide mapping, protein half-life assays, reporter assays |
Cellular and molecular life sciences |
Medium |
15719173
|
| 2006 |
STRA13 (BHLHE40) represses STAT1 transcription through a mechanism requiring its C-terminal trans-activation domain which binds HDAC1; this HDAC-dependent mechanism also results in repression of STAT1 target genes (MHC antigen-presenting genes, CASP1) under hypoxia via VHL/HIF-1 activation. |
Luciferase reporter assays with deletion/site-directed mutants, ChIP, TSA inhibition |
Oncogene |
High |
16878149
|
| 2006 |
DEC1 (BHLHE40) transactivates the survivin promoter through two Sp1 sites, and DEC1 protein is detected at the survivin promoter by EMSA and ChIP, establishing survivin as a direct transcriptional target. |
Reporter assays with Sp1 site mutants, EMSA, ChIP |
Oncogene |
High |
16462771
|
| 2007 |
DEC1 (BHLHE40) is a direct transcriptional target of the p53 family; p53 family proteins bind and activate the DEC1 promoter, and DEC1 overexpression induces G1 arrest and premature senescence independently of p21. |
cDNA microarray, luciferase reporter assays, ChIP showing p53 binding to DEC1 promoter, siRNA knockdown |
The Journal of biological chemistry |
High |
18025081
|
| 2007 |
Stra13 (BHLHE40) physically interacts with p53 in vitro and prevents Mdm2-mediated ubiquitination and nuclear export of p53, thereby stabilizing p53 levels to promote ionizing-radiation-induced apoptosis; Stra13-deficient thymocytes show reduced p53, Puma, and Noxa expression after irradiation. |
Stra13-/- mouse model, in vitro interaction assay, ubiquitination assay, gene expression |
EMBO reports |
High |
17347673
|
| 2007 |
Stra13 (BHLHE40) modulates satellite cell activation by antagonizing Notch signaling; Stra13-/- primary myoblasts show enhanced Notch activity, increased proliferation, and defective differentiation, and inhibition of Notch signaling rescues the regeneration defect of Stra13-/- mice. |
Stra13 knockout mouse model, in vitro Notch pathway reporter assays, pharmacological Notch inhibition rescue |
The Journal of cell biology |
High |
17502421
|
| 2007 |
DEC1 (BHLHE40) is induced by TGF-β signaling in mammary carcinoma cells and promotes cell survival; knockdown of DEC1 abrogates TGF-β-promoted cell survival, and a dominant-negative DEC1 mutant prevents lung and liver metastasis in vivo. |
Microarray, kinase inhibitor treatment, dominant-negative overexpression, in vivo metastasis model |
Cancer research |
High |
17942899
|
| 2008 |
BHLHE40 (BHLHB2) binds a specific sequence within Bdnf promoter 4 and mediates transcriptional repression; NMDA receptor activation reduces BHLHB2 occupancy at promoter 4, correlating with de-repressed BDNF exon 4 expression; Bhlhb2-/- mice show increased hippocampal BDNF exon 4 mRNA. |
EMSA, ChIP in hippocampal neurons, Bhlhb2 knockout mice |
The Journal of neuroscience |
High |
18234890
|
| 2008 |
TGF-β/activin signaling resets the circadian clock through SMAD3-dependent immediate-early induction of Dec1 (BHLHE40); intraperitoneal TGF-β injection in wild-type but not Dec1-deficient mice produces phase-shifts in peripheral clock gene expression, establishing Dec1 as an essential mediator of this non-light resetting pathway. |
ALK inhibitor/activator treatment, SMAD3 phosphorylation assays, Dec1-/- mouse model, in vivo clock gene expression |
Nature cell biology |
High |
19029909
|
| 2008 |
DEC1/STRA13 and DEC2 repress SREBP-1c by competing with SREBP-1c for binding to the E-box in the SREBP-1c promoter and/or by protein-protein interaction with SREBP-1c; DEC2 initiates acute hypoxic repression while DEC1 substitutes during prolonged hypoxia. |
Reporter assays, siRNA knockdown, protein-protein interaction assays |
Nucleic acids research |
High |
18838394
|
| 2008 |
DEC1 (BHLHB2) and DEC2 transcriptionally repress MLH1 by directly binding E-box-like motifs in the MLH1 promoter; repression is abolished by the HDAC inhibitor trichostatin A, indicating a histone deacetylase-dependent mechanism. |
Reporter assays, site-directed mutagenesis, EMSA, ChIP, TSA inhibition |
Oncogene |
High |
18345027
|
| 2008 |
BHLHB2/DEC1 (BHLHE40) suppresses ChREBP-mediated lipogenic gene expression by binding to carbohydrate response elements (ChoRE) in the Fasn, Lpk, and Bhlhb2 promoters, forming a negative feedback loop with ChREBP. |
ChIP in rat hepatocytes, reporter deletion assays, overexpression studies |
Biochemical and biophysical research communications |
Medium |
18602890
|
| 2009 |
Bhlhe40 binds to adjacent E-boxes (E1-box) on the PGC-1α core promoter and represses MyoD-mediated transactivation by sequestering the co-activator P/CAF from MyoD; P/CAF can relieve Bhlhe40-mediated repression in a dose-dependent manner. |
EMSA, ChIP, co-immunoprecipitation, reporter assays |
The Biochemical journal |
High |
19522704
|
| 2010 |
Dec1 (BHLHE40) interacts physically with the transcription factor Runx1 in regulatory T cells; the Dec1/Runx1 complex binds regulatory elements of the Il-2rα (CD25) locus, upregulating CD25 expression and supporting Treg homeostasis. |
Co-immunoprecipitation, ChIP at Il-2rα locus, enforced Dec1 expression in thymocytes |
Journal of immunology |
High |
21057086
|
| 2011 |
DEC1 (BHLHE40) directly binds a DEC-response element in the cyclin D1 promoter and represses cyclin D1 expression, linking DEC1 to G1/S cell cycle control. |
Reporter assays with cyclin D1 promoter mutants, ChIP confirming direct binding |
The Journal of pathology |
High |
21506129
|
| 2011 |
DEC1 (BHLHE40) physically interacts with HDAC2 and increases binding of DEC1 to the ΔNp63 promoter when HDAC2 is knocked down; DEC1 represses ΔNp63 expression and thereby modulates keratinocyte differentiation. |
Co-immunoprecipitation, ChIP, siRNA knockdown, reporter assays |
The Journal of biological chemistry |
High |
21317427
|
| 2011 |
SUMOylation of DEC1 (BHLHE40) at K159 and K279 stabilizes the protein by inhibiting ubiquitination, promotes its nuclear retention, and potentiates repression of CLOCK/BMAL1-mediated transcriptional activity through recruitment of HDAC1. |
SUMO modification assay in COS-7/MCF-7 cells, site-directed mutagenesis of SUMO acceptor lysines, ubiquitination assay, reporter assays |
PloS one |
High |
21829689
|
| 2012 |
SUMOylation of Stra13 (BHLHE40) at K159 and K279 potentiates transcriptional repression of cyclin D1 and G1 cell cycle arrest by enabling association with the co-repressor HDAC1; SUMO-site mutants localize normally to the nucleus but lose HDAC1 interaction and growth-suppressive activity. |
SUMO-site mutagenesis, co-immunoprecipitation with HDAC1, reporter assays, cell cycle analysis |
PloS one |
High |
22905217
|
| 2012 |
DEC1 (BHLHE40) represses PPARγ2 transcription by physically interacting with C/EBPβ already bound to the PPARγ2 promoter; DEC1 occupancy is accompanied by increased HDAC1 recruitment and reduced histone acetylation at the promoter. |
Co-immunoprecipitation, ChIP, reporter assays, adipogenic differentiation assay |
Molecules and cells |
High |
22610404
|
| 2014 |
Bhlhe40 (BHLHE40) is required cell-intrinsically in T cells to positively regulate GM-CSF production and negatively regulate IL-10 production; Bhlhe40-deficient mice are resistant to EAE and IL-10 receptor blockade restores susceptibility. |
Bhlhe40-/- mouse model, T cell adoptive transfer, cytokine ELISA, IL-10R blockade rescue |
Nature communications |
High |
24699451
|
| 2014 |
DEC1 (BHLHE40) coordinates with HDAC8 to differentially regulate TAp73 and ΔNp73: DEC1 activates TAp73 by recruiting HDAC8 to the TAp73 promoter, while repressing ΔNp73 through a distinct promoter mechanism. |
Co-immunoprecipitation of DEC1-HDAC8, ChIP showing HDAC8 recruitment to TAp73 promoter, reporter assays |
PloS one |
High |
24404147
|
| 2014 |
DEC1 (BHLHE40) protein stability is regulated by a dual ubiquitin-protease mechanism: SCFβTrCP ubiquitin ligase (in cooperation with CK1) targets DEC1 for proteasomal degradation during unperturbed cell cycles, while ATM/ATR-dependent DNA damage induces rapid DEC1 stabilization via the USP17 deubiquitylase, which binds and deubiquitylates DEC1. |
Ubiquitination assays, protein half-life measurements, Co-IP of SCFβTrCP and USP17 with DEC1, degradation-resistant mutant expression |
Molecular and cellular biology |
High |
25202122
|
| 2014 |
Bhlhe40 (BHLHE40) functions as a cofactor of T-bet (Tbx21) on the Ifng locus in iNKT cells; Bhlhe40 accumulates at the T-box region of the Ifng locus and promotes histone H3-K9 acetylation of the Ifng locus in a T-bet-dependent manner, enhancing IFN-γ production. |
ChIP at Ifng locus, Bhlhe40-/- mouse model, Ifng promoter reporter assays, histone acetylation analysis |
Proceedings of the National Academy of Sciences |
High |
27226296
|
| 2015 |
BHLHE40 and BHLHE41 suppress EMT effectors SNAI1, SNAI2, and TWIST1; BHLHE40/41 compete with the transcription factor SP1 for DNA binding at the TWIST1 promoter to regulate its basal transcriptional activity. |
Reporter assays with TWIST1 promoter, competition binding assays, in vitro invasion assays |
Molecular and cellular biology |
Medium |
26391953
|
| 2015 |
Bhlhe40 (BHLHE40) binds directly to the PGC-1α C-terminal activation domain and co-occupies PGC-1α target gene promoters/enhancers, repressing PGC-1α transactivational activity by recruiting HDACs and preventing relief of PGC-1α intramolecular repression. |
Co-immunoprecipitation of Bhlhe40-PGC-1α, ChIP at target promoters, HDAC recruitment assays, siRNA knockdown |
Molecular and cellular biology |
High |
25963661
|
| 2015 |
Hypoxia induces Bhlhe40 (BHLHE40) expression via a p53-dependent but HIF1α-independent pathway; Bhlhe40 binds proximal E-boxes of the Myog promoter and reduces MyoD binding affinity and transcriptional activity, thereby inhibiting myogenic differentiation under hypoxia. |
Microarray analysis, ChIP at Myog promoter, Bhlhe40 overexpression/knockdown, p53-dependent pathway analysis |
The Journal of biological chemistry |
High |
26468276
|
| 2015 |
DEC1 (BHLHE40) directly binds the E-box of the LKB1 promoter, repressing LKB1 expression; reduced LKB1 activity leads to decreased AMPK activity, establishing a DEC1→LKB1→AMPK regulatory axis. |
ChIP at LKB1 promoter E-box, DEC1 knockdown/overexpression, AMPK activity assays, DEC1 basic-domain mutants |
Biochemical and biophysical research communications |
Medium |
26498531
|
| 2016 |
IL-1β induces Bhlhe40 (BHLHE40) expression in Th17 cells, defining a PTX-IL-1β-Bhlhe40 pathway; Bhlhe40 expression identifies encephalitogenic Th cells producing IFN-γ, IL-17A, and GM-CSF, and Bhlhe40-deficient Th1 and Th17 cells are nonencephalitogenic in adoptive transfer EAE. |
Bhlhe40 reporter mice, adoptive transfer EAE, IL-1β stimulation, cytokine analysis |
The Journal of experimental medicine |
High |
26834156
|
| 2018 |
Bhlhe40 (BHLHE40) positively regulates IFN-γ production and negatively regulates IL-10 production in Th1 cells; Bhlhe40-mediated IFN-γ production is independent of T-bet regulation; in vivo, Bhlhe40-deficient mice succumb to Toxoplasma gondii infection and IL-10 signaling blockade rescues them. |
Conditional Bhlhe40 deletion in T cells, in vitro Th1 polarization, in vivo T. gondii infection model, IL-10R blockade |
The Journal of experimental medicine |
High |
29773643
|
| 2018 |
BHLHE40 promotes HBEGF transcription by blocking DNA binding of HDAC1 and HDAC2 at the HBEGF promoter; HBEGF secreted through exosomes promotes breast cancer cell survival and migration. |
ChIP showing BHLHE40 at HBEGF promoter, co-immunoprecipitation of BHLHE40 with HDAC1/2, CRISPR KO, exosome analysis |
Breast cancer research |
High |
30285805
|
| 2018 |
Bhlhe40 (BHLHE40) negatively regulates PGC-1α gene expression and the function and biogenesis of peroxisomes and mitochondria in myogenic cells; Bhlhe40 knockdown increases peroxisome number/activity but reduces mitochondrial efficiency, while overexpression of the PGC-1α-interacting domain of Bhlhe40 differentially regulates the two organelles. |
siRNA knockdown, overexpression, peroxisome/mitochondria counting and activity assays, gene expression profiling |
Redox biology |
Medium |
30391825
|
| 2018 |
DEC1 (BHLHE40) and CLOCK bind E-boxes in the ATP1B1 (Na+/K+-ATPase β1 subunit) promoter; CLOCK:BMAL1 activates ATP1B1 transcription while DEC1 suppresses this transactivation, and Dec1-deficient mice show enhanced Atp1b1 expression and reduced blood pressure. |
ChIP and ChIP-on-chip at ATP1B1 promoter, luciferase reporter assays, Dec1-/- and Clock-mutant mice |
Hypertension |
High |
30012868
|
| 2019 |
Bhlhe40 (BHLHE40) is required for tissue-resident memory CD8+ T cell (Trm) and tumor-infiltrating lymphocyte (TIL) development and polyfunctionality; mechanistically, Bhlhe40 sustains mitochondrial fitness and a functional epigenetic state; local PD-1 signaling inhibits TIL Bhlhe40 expression and Bhlhe40 is critical for TIL reinvigoration following anti-PD-L1 blockade. |
Bhlhe40 KO mouse model, mitochondrial function assays, ATAC-seq epigenetic profiling, anti-PD-L1 treatment |
Immunity |
High |
31533057
|
| 2019 |
Bhlhe40 (BHLHE40) is required cell-intrinsically for the self-renewal and proliferation (but not polarization) of large peritoneal macrophages (LPMs); Bhlhe40 represses c-Maf and Mafb expression and directly promotes expression of cell cycle genes; Bhlhe40 binds genomic sites co-occupied by PU.1 as well as unique sites at Maf and cell-cycle loci. |
Bhlhe40 conditional KO, competitive reconstitution, ChIP-seq in LPMs, IL-4 proliferation assays |
Nature immunology |
High |
31061528
|
| 2019 |
Bhlhe40 and Bhlhe41 directly repress expression of lineage-inappropriate genes in alveolar macrophages (AMs) to maintain AM identity and self-renewal; genome-wide Bhlhe40 DNA binding analysis showed direct repression of non-AM signature genes. |
Bhlhe40/41 double-KO mouse model, gene expression analysis, ChIP-seq/genome-wide binding characterization |
The EMBO journal |
High |
31414712
|
| 2019 |
BHLHE40 expression in H. pylori-infected gastric epithelial cells is induced via the cagA-ERK pathway; BHLHE40 translocates to the nucleus and binds p-STAT3 (Tyr705); the BHLHE40-p-STAT3 complex increases CXCL12 expression, fostering CD4+ T cell infiltration. |
Co-immunoprecipitation of BHLHE40 and p-STAT3, ChIP at CXCL12 promoter, ERK pathway inhibitors |
FASEB journal |
Medium |
31914631
|
| 2020 |
BHLHE40 (and BHLHE41) act as negative feedback regulators of TFEB transcriptional activity; high, sustained nuclear TFEB induces BHLHE40/41 expression, and BHLHE40/41 counter-regulate TFEB target genes, particularly genes relevant to lysosomal cell death. |
Genome-wide CRISPR screen, TFEB activation assays, gene expression analysis |
Cell reports |
Medium |
33176151
|
| 2020 |
BHLHE40 is required in T cells for a TH2 cell transcriptional program during helminth infection, positively regulating GM-CSF (Csf2) and IL-5 production; combined loss of GM-CSF and IL-5 signaling impairs helminth protection. |
Bhlhe40 conditional KO in T cells, helminth infection model, cytokine gene expression analysis |
Journal of immunology |
Medium |
31900338
|
| 2021 |
Bhlhe40 (BHLHE40) is a cell-intrinsic negative regulator of the germinal center (GC) reaction; in activated CD4 T cells it restrains proliferation limiting TFH numbers, while in B cells it selectively restricts generation of earliest GC B cells; Bhlhe40-deficient mice develop B cell lymphoma characterized by GC B-like cells. |
Bhlhe40-/- mouse model, flow cytometry, adoptive transfer, longitudinal lymphoma monitoring |
The Journal of experimental medicine |
High |
34919144
|
| 2022 |
BHLHE40 directly transcriptionally regulates TAN-1 (pro-tumour neutrophil) marker genes in pancreatic cancer, downstream of hypoxia and endoplasmic reticulum stress; direct transcriptional regulation demonstrated by ChIP assay. |
Single-cell RNA-seq, ChIP assay, BHLHE40 overexpression in dHL-60 cells |
Gut |
Medium |
35688610
|
| 2022 |
BHLHE40 regulates T cell-dependent anti-tumor immunity and immune checkpoint therapy (ICT) efficacy; anti-PD-1 and anti-CTLA-4 upregulate BHLHE40 in tumor antigen-specific T cells; BHLHE40-deficient T cells show dysregulated NF-κB signaling, IFNγ response, and altered chemokine/granzyme expression; BHLHE40 is required for ICT-driven macrophage polarization. |
Bhlhe40-/- mouse model, single-cell RNA-seq, in vivo tumor models with ICT |
Cancer immunology research |
Medium |
35181783
|
| 2023 |
BHLHE40 regulates SREBF1 transcription as a classic transcription factor and also physically links the enhancer and promoter regions of SREBF1; the BHLHE40-SREBF1-stearoyl-CoA desaturase axis protects pancreatic cancer cells from ferroptosis by reducing lipid peroxidation. |
ChIP-seq, RNA-seq, Hi-C/chromosome conformation capture assays, BHLHE40 KO/overexpression |
Advanced science |
High |
38064101
|
| 2023 |
BHLHE40 (BHLHE40) in vitro CRISPR screen identified it as a regulator of CD8+ T cell exhaustion differentiation; in vitro and in vivo validation showed BHLHE40 regulates the differentiation checkpoint between progenitor and intermediate exhausted T cell subsets. |
In vitro chronic stimulation model, genome-wide CRISPR screen, in vivo validation |
Science immunology |
Medium |
37595022
|
| 2023 |
BHLHE40 represses MAFA expression by attenuating the binding of PDX1 to the Mafa enhancer region, thereby suppressing insulin secretion in hypoxic β-cells; BHLHE40 deficiency in hypoxic MIN6 cells or ob/ob β-cells reverses insulin secretion defects. |
BHLHE40 KO/overexpression in MIN6 cells and ob/ob mice, ChIP at Mafa enhancer, MAFA re-expression rescue |
EMBO reports |
High |
37341148
|
| 2024 |
Loss of BHLHE40/41 in macrophages results in increased expression of DLAM (disease-associated macrophage) genes involved in cholesterol clearance and lysosomal processing, increased cholesterol efflux and storage, and increased lysosomal mass and degradative capacity, identifying BHLHE40/41 as transcriptional repressors of this activation state. |
BHLHE40/41 KO in iPSC-derived microglia and THP-1 macrophages; mouse Bhlhe40/41 KO; gene regulatory network reconstruction from scRNA-seq data |
Nature communications |
High |
38448474
|