Affinage

ACTR5

Actin-related protein 5 · UniProt Q9H9F9

Length
607 aa
Mass
68.3 kDa
Annotated
2026-06-09
4 papers in source corpus 2 papers cited in narrative 3 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ACTR5 is a component of the INO80 chromatin remodeling complex that functions as a dependency for hepatocellular carcinoma proliferation (PMID:36563143). Its loss-of-function activates CDKN2A expression and ablates CDK/E2F-driven cell cycle signaling, thereby attenuating tumor growth (PMID:36563143). ACTR5 acts together with its partner IES6 through a mechanism distinct from the canonical INO80 complex, since high-density CRISPR tiling profiles of ACTR5 and IES6 diverge from those of other INO80 subunits (PMID:36563143). Beyond this chromatin-associated cell cycle role, no further biochemical mechanism (substrate specificity, recruitment, or structural basis of CDKN2A repression) has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2022 Medium

    Established ACTR5 as a functional tumor dependency by linking its loss to a defined molecular phenotype, answering whether this INO80 subunit has a non-redundant role in cancer cell proliferation.

    Evidence Epigenetics-focused CRISPR interference screen and gene tiling scans with cell cycle and tumor growth readouts in HCC

    PMID:36563143

    Open questions at the time
    • Direct molecular mechanism by which ACTR5 represses CDKN2A is not defined
    • Whether the dependency extends beyond HCC is untested
    • No biochemical demonstration of ACTR5 binding at the CDKN2A locus
  2. 2022 Medium

    Distinguished ACTR5/IES6 function from the canonical INO80 complex, addressing whether ACTR5's pro-proliferative role depends on intact INO80.

    Evidence Differential high-density CRISPR tiling dependency profiling comparing ACTR5/IES6 against other INO80 subunits

    PMID:36563143

    Open questions at the time
    • Biochemical nature of the INO80-independent ACTR5/IES6 module is not characterized
    • Whether ACTR5/IES6 form a stable distinct complex is unresolved
  3. 2025 Low

    Implicated ACTR5 as a positive regulator of type I interferon signaling, addressing a possible role outside cell cycle control via a disease-associated variant.

    Evidence IFN-β luciferase reporter assay using a patient-derived de novo ACTR5 variant

    PMID:40386946

    Open questions at the time
    • Single luciferase assay with one patient variant and no mechanistic follow-up
    • Connection between ACTR5's chromatin role and IFN signaling is undefined
    • No demonstration of endogenous ACTR5 acting in the IFN pathway

Open questions

Synthesis pass · forward-looking unresolved questions
  • How ACTR5 mechanistically represses CDKN2A and whether this connects to its reported interferon-regulatory activity remains unknown.
  • No structural or biochemical model of ACTR5 action
  • No identified DNA target or recruitment mechanism at CDKN2A
  • Relationship between cell cycle and interferon roles unestablished

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Pathway
R-HSA-4839726 Chromatin organization 2 R-HSA-1640170 Cell Cycle 1
Partners
Complex memberships
INO80 chromatin remodeling complex

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 ACTR5, a component of the INO80 chromatin remodeling complex, is essential for hepatocellular carcinoma (HCC) tumor progression; its suppression activates CDKN2A expression and ablates CDK/E2F-driven cell cycle signaling, attenuating HCC tumor growth. Epigenetics-focused CRISPR interference screen, high-density CRISPR gene tiling scans, loss-of-function (ACTR5 suppression) with cell cycle signaling and tumor growth phenotypic readouts Science advances Medium 36563143
2022 ACTR5 and its interacting partner IES6 operate via an INO80-independent mechanism to support HCC cell proliferation, as revealed by differential CRISPR tiling profiles compared to other INO80 complex members. High-density CRISPR gene tiling scans comparing ACTR5/IES6 vs. other INO80 complex members; genetic epistasis by differential dependency profiling Science advances Medium 36563143
2025 A de novo variant in ACTR5 enhanced type I interferon (IFN-β) signaling, placing ACTR5 as a positive regulator of type I IFN signaling. IFN-β luciferase reporter assay using patient-derived de novo ACTR5 variant Arthritis & rheumatology (Hoboken, N.J.) Low 40386946

Source papers

Stage 0 corpus · 4 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 Using microarray technology to select housekeeping genes in Chinese hamster ovary cells. Biotechnology and bioengineering 33 19557832
2022 ACTR5 controls CDKN2A and tumor progression in an INO80-independent manner. Science advances 14 36563143
2025 Improved Diagnostic Yield in Recessive Intellectual Disability Utilizing Systematic Whole Exome Sequencing Data Reanalysis. Clinical genetics 2 39748273
2025 Trio Whole Exome Sequencing in Chinese Childhood-Onset Lupus Reveals Novel Candidate Genes. Arthritis & rheumatology (Hoboken, N.J.) 2 40386946

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