Affinage

ZFP1

Zinc finger protein 1 homolog · UniProt Q6P2D0

Length
407 aa
Mass
47.5 kDa
Annotated
2026-06-11
60 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ZFP1 (human PITA) is a KRAB-type C2H2 zinc-finger transcriptional repressor that functions as a stress-responsive, selective negative regulator of p53-mediated metabolic control (PMID:29467382). PITA physically interacts with p53 and specifically suppresses transcription of the p53 glycolysis-regulating target gene TIGAR, while sparing other p53 targets such as SCO2; consistent with this, PITA transgenic mice show increased PFK1 activity and elevated glycolytic rate (PMID:29467382). Under glucose starvation, ATM kinase-mediated phosphorylation of PITA drives its dissociation from p53, permitting p53 activation and TIGAR induction that inhibits aerobic glycolysis, thereby coupling metabolic stress sensing to p53 transcriptional output (PMID:29467382). The protein's domain architecture—seven C2H2 zinc fingers with Krüppel-like organization—was defined in the mouse ortholog (PMID:2574853). Beyond this p53/TIGAR axis and the structural characterization, no further mechanistic detail has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 1989 Medium

    Established the molecular identity and domain architecture of the gene, defining it as a Krüppel-related C2H2 zinc-finger protein with potential DNA-binding/transcription-factor function.

    Evidence cDNA cloning, sequence analysis, Northern blot expression profiling and chromosomal mapping of mouse Zfp1

    PMID:2574853

    Open questions at the time
    • Structural assignment of zinc fingers was inferred from sequence without functional mutagenesis
    • No DNA target or binding specificity defined
    • No transcriptional or biochemical activity demonstrated
  2. 2018 High

    Resolved the functional role of human PITA/ZFP1 as a p53-binding repressor that selectively silences TIGAR to promote glycolysis, and defined ATM phosphorylation as the switch that releases this repression under glucose starvation.

    Evidence Reciprocal Co-IP, luciferase reporter assays, transgenic mouse metabolic phenotyping (PFK1 activity, glycolytic rate), glucose starvation and ATM inhibitor experiments, and PITA depletion in colorectal cancer cells

    PMID:29467382

    Open questions at the time
    • Direct DNA binding of PITA at the TIGAR locus versus indirect repression via p53 not fully distinguished
    • Specific ATM phosphosite(s) on PITA not mapped
    • Basis for selectivity toward TIGAR over other p53 targets such as SCO2 unexplained

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PITA achieves promoter selectivity among p53 targets and whether it engages chromatin or co-repressor machinery via its KRAB/zinc-finger domains remains unresolved.
  • No structural model of the PITA-p53 interface
  • No genome-wide DNA-binding map
  • Co-repressor partners of the KRAB domain not identified

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003677 DNA binding 1 GO:0140110 transcription regulator activity 1
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-1430728 Metabolism 1
Partners

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1989 Mouse Zfp-1 (Zfp1) encodes a protein containing 7 C2H2 zinc fingers and two helix-turn-helix motifs, structurally related to the Drosophila segmentation gene Krüppel; the gene is ubiquitously expressed during embryogenesis with peak expression at day 12, and maps to the 16q region of mouse chromosome 8. cDNA cloning, nucleotide and amino acid sequence analysis, Northern blot expression analysis, chromosomal mapping Nucleic acids research Medium 2574853
2018 The human KRAB-type zinc-finger protein PITA (ZFP1) physically interacts with p53 and specifically suppresses transcription of the p53 target gene TIGAR (a glycolysis regulator), but not SCO2; PITA transgenic mice exhibit increased PFK1 activity and elevated glycolytic rate. Upon glucose starvation, PITA dissociates from p53, allowing p53 activation and TIGAR induction which inhibits aerobic glycolysis. The dynamic dissociation of PITA from p53 under metabolic stress is dependent on ATM kinase-mediated phosphorylation of PITA. Co-immunoprecipitation, transgenic mouse phenotyping (PFK1 activity, glycolytic rate), luciferase reporter transcription assays, glucose starvation experiments, ATM kinase inhibitor experiments, PITA/PISA depletion in colorectal cancer cells Cell research High 29467382

Source papers

Stage 0 corpus · 60 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. The Plant cell 342 11090207
2000 A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta. The Plant cell 339 11090206
2011 Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLoS pathogens 167 21829350
2001 Characterization of PitA and PitB from Escherichia coli. Journal of bacteriology 109 11489853
2003 Germline cell death is inhibited by P-element insertions disrupting the dcp-1/pita nested gene pair in Drosophila. Genetics 101 14704173
2014 Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin. Genome research 90 25342723
2007 Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence. Fungal genetics and biology : FG & B 89 17387027
2008 Genome organization and evolution of the AVR-Pita avirulence gene family in the Magnaporthe grisea species complex. Molecular plant-microbe interactions : MPMI 88 18393625
2016 Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila. Nucleic acids research 60 27137890
2021 The Fungal Effector Avr-Pita Suppresses Innate Immunity by Increasing COX Activity in Rice Mitochondria. Rice (New York, N.Y.) 49 33443630
2018 The small protein MgtS and small RNA MgrR modulate the PitA phosphate symporter to boost intracellular magnesium levels. Molecular microbiology 47 30276893
2004 Rice Pi-ta gene Confers Resistance to the Major Pathotypes of the Rice Blast Fungus in the United States. Phytopathology 44 18943978
2008 Expression of the PitA phosphate/metal transporter of Escherichia coli is responsive to zinc and inorganic phosphate levels. FEMS microbiology letters 39 19054109
2003 Natural Variation at the Pi-ta Rice Blast Resistance Locus. Phytopathology 39 18944075
2018 KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration. Cell research 37 29467382
2020 The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita. Rice (New York, N.Y.) 33 32170462
2017 Architectural protein Pita cooperates with dCTCF in organization of functional boundaries in Bithorax complex. Development (Cambridge, England) 32 28619827
2016 Coevolutionary Dynamics of Rice Blast Resistance Gene Pi-ta and Magnaporthe oryzae Avirulence Gene AVR-Pita 1. Phytopathology 30 27070427
2012 Tellurite enters Escherichia coli mainly through the PitA phosphate transporter. MicrobiologyOpen 28 23189244
2008 Haplotype diversity at the Pi-ta locus in cultivated rice and its wild relatives. Phytopathology 28 19000005
2018 Peanut gastrointestinal delivery oral immunotherapy in adolescents: Results of the build-up phase of a randomized, double-blind, placebo-controlled trial (PITA study). Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology 27 29665158
2011 Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA. PloS one 26 22043312
2021 Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster. Epigenetics & chromatin 24 33752739
1989 Structure, expression and chromosomal localization of Zfp-1, a murine zinc finger protein gene. Nucleic acids research 24 2574853
2014 Role of an archaeal PitA transporter in the copper and arsenic resistance of Metallosphaera sedula, an extreme thermoacidophile. Journal of bacteriology 22 25092032
2009 Artificial introgression of a large chromosome fragment around the rice blast resistance gene Pi-ta in backcross progeny and several elite rice cultivars. Heredity 20 19623205
2019 The Cys2His2 zinc finger protein Zfp1 regulates sexual reproduction and virulence in Cryptococcus neoformans. Fungal genetics and biology : FG & B 18 30630094
2015 The ActP acetate transporter acts prior to the PitA phosphate carrier in tellurite uptake by Escherichia coli. Microbiological research 18 26211961
2024 The unconventional resistance protein PTR recognizes the Magnaporthe oryzae effector AVR-Pita in an allele-specific manner. Nature plants 17 38834685
2009 The low-affinity phosphate transporter PitA is dispensable for in vitro growth of Mycobacterium smegmatis. BMC microbiology 17 20003273
2014 Transposon-based high sequence diversity in Avr-Pita alleles increases the potential for pathogenicity of Magnaporthe oryzae populations. Functional & integrative genomics 16 24633351
2013 Molecular diversity in rice blast resistance gene Pi-ta makes it highly effective against dynamic population of Magnaporthe oryzae. Functional & integrative genomics 16 23818197
2005 Morphological irregularities and features of resistance to apoptosis in the dcp-1/pita double mutated egg chambers during Drosophila oogenesis. Cell motility and the cytoskeleton 15 15547953
2009 Determination of Resistance Spectra of the Pi-ta and Pi-k Genes to U.S. Races of Magnaporthe oryzae Causing Rice Blast in a Recombinant Inbred Line Population. Plant disease 13 30764397
2020 Up-Regulation of Hsa_circ_0008792 Inhibits Osteosarcoma Cell Invasion and Migration and Promotes Apoptosis by Regulating Hsa-miR-711/ZFP1. OncoTargets and therapy 11 32210583
2018 Functional Interactions Between Major Rice Blast Resistance Genes, Pi-ta and Pi-b, and Minor Blast Resistance Quantitative Trait Loci. Phytopathology 11 29658844
2014 Effectiveness and durability of the rice pi-ta gene in Yunnan province of China. Phytopathology 11 24450460
2022 Pseudomonas aeruginosa Phosphate Transporter PitA (PA4292) Controls Susceptibility to Aminoglycoside Antibiotics by Regulating the Proton Motive Force. Antimicrobial agents and chemotherapy 10 36346250
2015 Ugp and PitA participate in the selection of PHO-constitutive mutants. Journal of bacteriology 8 25645557
2023 PitA Controls the H2- and H3-T6SSs through PhoB in Pseudomonas aeruginosa. Applied and environmental microbiology 7 37184394
2022 Effects of Tasting and Ingredient Information Statement on Acceptability, Elicited Emotions, and Willingness to Purchase: A Case of Pita Chips Containing Edible Cricket Protein. Foods (Basel, Switzerland) 7 35159488
2020 The adhesive PitA pilus protein from the early dental plaque colonizer Streptococcus oralis: expression, purification, crystallization and X-ray diffraction analysis. Acta crystallographica. Section F, Structural biology communications 7 31929180
2022 Analysis of a rice blast resistance gene Pita-Fuhui2663 and development of selection marker. Scientific reports 5 36050368
2014 Nucleotide diversity of Pita, a major blast resistance gene and identification of its minimal promoter. Gene 5 24905652
2014 Statistical inference of selection and divergence of the rice blast resistance gene Pi-ta. G3 (Bethesda, Md.) 5 25335927
2004 Medicago truncatula Mt-ZFP1 encoding a root enhanced zinc finger protein is regulated by cytokinin, abscisic acid and jasmonate, but not cold. DNA sequence : the journal of DNA sequencing and mapping 5 15346764
2023 The PitA protein contributes to colistin susceptibility in Pseudomonas aeruginosa. PloS one 3 37824582
2022 Fitness benefits play a vital role in the retention of the Pi-ta susceptible alleles. Genetics 3 35143673
2022 Zfp1, a Cys2His2 zinc finger protein is required for meiosis initiation in Tetrahymena thermophila. Cell cycle (Georgetown, Tex.) 3 35293272
2021 In silico molecular and morphological analysis of rice blast resistant gene Pi-ta in Sri Lankan rice germplasm. Journal, genetic engineering & biotechnology 3 34676451
2024 Zinc finger transcription factor ZFP1 is associated with growth, conidiation, osmoregulation, and virulence in the Polygonatum kingianum pathogen Fusarium oxysporum. Scientific reports 2 38992190
2023 Genetic and molecular analysis of leaf blast resistance in Tetep derived line RIL4 and its relationship to genes at Pita/Pita2 locus. Scientific reports 2 37907574
2022 The compliance of nutrition claims on pita bread in Lebanon and risk on public health: a cross-sectional study. BMC nutrition 2 35430802
2025 ZAD mediates chromatin binding and insulator activity of Drosophila Pita and can be replaced with the human ZFP276 ZAD-like domain. Epigenetics & chromatin 1 41291933
2024 Exploring Distribution and Evolution of Pi-ta Haplotypes in Rice Landraces across Different Rice Cultivation Regions in Yunnan. Genes 1 39457449
2022 Identifying mutations in sd1, Pi54 and Pi-ta, and positively selected genes of TN1, the first semidwarf rice in Green Revolution. Botanical studies 1 35347474
2017 Effect of Buttermilk on the Physicochemical, Rheological, and Sensory Qualities of Pan and Pita Bread. International journal of food science 1 29318139
2026 Identification of a Major Rice Blast Quantitative Trait Locus Containing Pita/Pi39(t)/Ptr in U.S. Black Hull Awn Weedy Rice. Phytopathology 0 40952343
2026 Pyramiding Pita, Pigm, Pi2, and Xa23 to Develop Hybrid Rice with Dual Resistance to Rice Blast and Bacterial Blight. Plants (Basel, Switzerland) 0 41600128
2008 [Genetic diversity of AVR-pita alleles of rice blast fungus Magnaporthe grisea]. Fen zi xi bao sheng wu xue bao = Journal of molecular cell biology 0 19137822

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