Affinage

YLPM1

YLP motif-containing protein 1 · UniProt P49750

Round 2 refusal
Length
2146 aa
Mass
241.6 kDa
Annotated
2026-04-28
130 papers in source corpus

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

No mechanistic findings about YLPM1 in the available literature (corpus appears contaminated with off-target papers).

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
No controlled-vocabulary terms were assigned to this entry.

Source papers

Stage 0 corpus · 130 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1995 Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease. Nature 3346 7596406
2006 Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2861 17081983
2005 A human protein-protein interaction network: a resource for annotating the proteome. Cell 1704 16169070
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2010 Network organization of the human autophagy system. Nature 1286 20562859
2009 Defining the human deubiquitinating enzyme interaction landscape. Cell 1282 19615732
2004 Large-scale characterization of HeLa cell nuclear phosphoproteins. Proceedings of the National Academy of Sciences of the United States of America 1159 15302935
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
1992 ZAP-70: a 70 kd protein-tyrosine kinase that associates with the TCR zeta chain. Cell 986 1423621
2012 The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Molecular cell 973 22681889
2018 VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell discovery 829 29507755
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2004 ZAP-70 compared with immunoglobulin heavy-chain gene mutation status as a predictor of disease progression in chronic lymphocytic leukemia. The New England journal of medicine 706 15329427
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2012 A census of human soluble protein complexes. Cell 689 22939629
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2018 High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies. Molecular cell 580 29395067
1995 Essential role for ZAP-70 in both positive and negative selection of thymocytes. Nature 455 7630421
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2015 A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell 433 26638075
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2010 Systematic analysis of human protein complexes identifies chromosome segregation proteins. Science (New York, N.Y.) 421 20360068
1994 Human severe combined immunodeficiency due to a defect in ZAP-70, a T cell tyrosine kinase. Science (New York, N.Y.) 416 8202712
2002 Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein. Science (New York, N.Y.) 410 12215647
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2015 Panorama of ancient metazoan macromolecular complexes. Nature 407 26344197
1996 Direct regulation of ZAP-70 by SHP-1 in T cell antigen receptor signaling. Science (New York, N.Y.) 347 8638162
2021 A proximity-dependent biotinylation map of a human cell. Nature 339 34079125
1995 Activation of ZAP-70 kinase activity by phosphorylation of tyrosine 493 is required for lymphocyte antigen receptor function. The EMBO journal 334 7781602
2010 Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. Cell 318 21145461
1998 Tissue hyperplasia and enhanced T-cell signalling via ZAP-70 in c-Cbl-deficient mice. Molecular and cellular biology 309 9671496
2010 ZAP-70: an essential kinase in T-cell signaling. Cold Spring Harbor perspectives in biology 298 20452964
2016 The cell proliferation antigen Ki-67 organises heterochromatin. eLife 265 26949251
2004 Functional proteomics mapping of a human signaling pathway. Genome research 247 15231748
2008 Relative value of ZAP-70, CD38, and immunoglobulin mutation status in predicting aggressive disease in chronic lymphocytic leukemia. Blood 245 18577710
2013 The functional interactome landscape of the human histone deacetylase family. Molecular systems biology 235 23752268
2011 Toward an understanding of the protein interaction network of the human liver. Molecular systems biology 207 21988832
2016 EZH2 and BCL6 Cooperate to Assemble CBX8-BCOR Complex to Repress Bivalent Promoters, Mediate Germinal Center Formation and Lymphomagenesis. Cancer cell 201 27505670
2007 Structural basis for the inhibition of tyrosine kinase activity of ZAP-70. Cell 200 17512407
2017 TRIM25 Enhances the Antiviral Action of Zinc-Finger Antiviral Protein (ZAP). PLoS pathogens 173 28060952
1995 Activating and inhibitory mutations in adjacent tyrosines in the kinase domain of ZAP-70. The Journal of biological chemistry 171 7642520
2009 The structure, regulation, and function of ZAP-70. Immunological reviews 163 19290920
2004 Regulation of ZAP-70 activation and TCR signaling by two related proteins, Sts-1 and Sts-2. Immunity 152 14738763
2014 ZAP-70 genotype disrupts the relationship between microbiota and host, leading to spondyloarthritis and ileitis in SKG mice. Arthritis & rheumatology (Hoboken, N.J.) 150 25048686
1996 Differential intrinsic enzymatic activity of Syk and Zap-70 protein-tyrosine kinases. The Journal of biological chemistry 145 8798454
2001 Cbl promotes ubiquitination of the T cell receptor zeta through an adaptor function of Zap-70. The Journal of biological chemistry 135 11353765
2007 CD38 and ZAP-70 are functionally linked and mark CLL cells with high migratory potential. Blood 129 17699742
1994 The protein tyrosine kinase ZAP-70 can associate with the SH2 domain of proto-Vav. The Journal of biological chemistry 126 7798261
2017 ZAP-70 in Signaling, Biology, and Disease. Annual review of immunology 123 29237129
2015 The Zinc-Finger Antiviral Protein ZAP Inhibits LINE and Alu Retrotransposition. PLoS genetics 122 25951186
1996 Association of tyrosine protein kinase Zap-70 with the protooncogene product p120c-cbl in T lymphocytes. The Journal of experimental medicine 122 8551236
1996 RANTES induces tyrosine kinase activity of stably complexed p125FAK and ZAP-70 in human T cells. The Journal of experimental medicine 121 9064347
1996 Distinct tyrosine phosphorylation sites in ZAP-70 mediate activation and negative regulation of antigen receptor function. Molecular and cellular biology 120 8756661
2007 ZAP-70 enhances IgM signaling independent of its kinase activity in chronic lymphocytic leukemia. Blood 118 18048647
2003 Unexpected requirement for ZAP-70 in pre-B cell development and allelic exclusion. Immunity 114 12705855
2019 KHNYN is essential for the zinc finger antiviral protein (ZAP) to restrict HIV-1 containing clustered CpG dinucleotides. eLife 113 31284899
2015 The Broad-Spectrum Antiviral Protein ZAP Restricts Human Retrotransposition. PLoS genetics 113 26001115
2012 Translational repression precedes and is required for ZAP-mediated mRNA decay. The EMBO journal 112 23023399
1999 TCR and CD28 are coupled via ZAP-70 to the activation of the Vav/Rac-1-/PAK-1/p38 MAPK signaling pathway. Journal of immunology (Baltimore, Md. : 1950) 108 10395678
2002 In the immune synapse, ZAP-70 controls T cell polarization and recruitment of signaling proteins but not formation of the synaptic pattern. Immunity 107 12387734
2001 Tyrosine phosphorylation-dependent activation of NF-kappa B. Requirement for p56 LCK and ZAP-70 protein tyrosine kinases. European journal of biochemistry 102 11231305
1998 Differential requirements for ZAP-70 in TCR signaling and T cell development. Journal of immunology (Baltimore, Md. : 1950) 100 9794398
2012 Structure of N-terminal domain of ZAP indicates how a zinc-finger protein recognizes complex RNA. Nature structural & molecular biology 95 22407013
2013 Structural basis for activation of ZAP-70 by phosphorylation of the SH2-kinase linker. Molecular and cellular biology 90 23530057
2002 Natural cytotoxicity uncoupled from the Syk and ZAP-70 intracellular kinases. Nature immunology 90 11836527
2007 HIV-1 Nef assembles a Src family kinase-ZAP-70/Syk-PI3K cascade to downregulate cell-surface MHC-I. Cell host & microbe 87 18005690
2019 Characterization of Novel Splice Variants of Zinc Finger Antiviral Protein (ZAP). Journal of virology 86 31118263
1995 Reconstitution of Syk function by the ZAP-70 protein tyrosine kinase. Immunity 84 7538440
2002 Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nature immunology 82 12447358
2002 Signaling through ZAP-70 is required for CXCL12-mediated T-cell transendothelial migration. Blood 81 11964272
1998 ZAP-70-dependent and -independent activation of Erk in Jurkat T cells. Differences in signaling induced by H2o2 and Cd3 cross-linking. The Journal of biological chemistry 78 9553143
1996 Enhancement of lymphocyte responsiveness by a gain-of-function mutation of ZAP-70. Molecular and cellular biology 78 8943331
1999 Perturbed regulation of ZAP-70 and sustained tyrosine phosphorylation of LAT and SLP-76 in c-Cbl-deficient thymocytes. Journal of immunology (Baltimore, Md. : 1950) 77 10358158
2021 The short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting. Nature communications 75 34893599
2018 From APOBEC to ZAP: Diverse mechanisms used by cellular restriction factors to inhibit virus infections. Biochimica et biophysica acta. Molecular cell research 70 30290238
1999 Dephosphorylation of ZAP-70 and inhibition of T cell activation by activated SHP1. European journal of immunology 69 10458769
2008 ZAP-mediated mRNA degradation. RNA biology 67 18418085
2007 Distinct roles for Syk and ZAP-70 during early thymocyte development. The Journal of experimental medicine 67 17606633
2005 ZAP-70 methylation status is associated with ZAP-70 expression status in chronic lymphocytic leukemia. Haematologica 67 16079107
2020 CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms. Journal of virology 66 31748389
2005 Immunohistochemical analysis of ZAP-70 expression in B-cell lymphoid neoplasms. The Journal of pathology 60 15685592
2006 ZAP-70 is expressed by normal and malignant human B-cell subsets of different maturational stage. Leukemia 54 16482211
1998 ZAP-70 tyrosine kinase is required for LFA-1-dependent T cell migration. The Journal of cell biology 54 9732296
1998 ZAP-70 association with T cell receptor zeta (TCRzeta): fluorescence imaging of dynamic changes upon cellular stimulation. The Journal of cell biology 53 9813084
2006 B lymphocytes in humans express ZAP-70 when activated in vivo. European journal of immunology 52 16482508
2014 Validation of ZAP-70 methylation and its relative significance in predicting outcome in chronic lymphocytic leukemia. Blood 51 24868078
2020 Immunomodulatory drugs activate NK cells via both Zap-70 and cereblon-dependent pathways. Leukemia 50 32238854
2019 ZAP's stress granule localization is correlated with its antiviral activity and induced by virus replication. PLoS pathogens 45 31116799
2000 Defective recruitment and activation of ZAP-70 in common variable immunodeficiency patients with T cell defects. European journal of immunology 44 11009097
1997 ZAP-70 tyrosine kinase is required for the up-regulation of Fas ligand in activation-induced T cell apoptosis. Journal of immunology (Baltimore, Md. : 1950) 42 9233606
2020 Human cytomegalovirus evades ZAP detection by suppressing CpG dinucleotides in the major immediate early 1 gene. PLoS pathogens 41 32886716
2022 Poly(ADP-ribose) potentiates ZAP antiviral activity. PLoS pathogens 40 35130321
2008 A novel ZAP-70 dependent FRET based biosensor reveals kinase activity at both the immunological synapse and the antisynapse. PloS one 38 18231606
1997 Regulation of ZAP-70 intracellular localization: visualization with the green fluorescent protein. The Journal of experimental medicine 38 9362531
2021 S-farnesylation is essential for antiviral activity of the long ZAP isoform against RNA viruses with diverse replication strategies. PLoS pathogens 37 34695163
2020 Zinc-finger antiviral protein (ZAP) is a restriction factor for replication of modified vaccinia virus Ankara (MVA) in human cells. PLoS pathogens 37 32866210
2020 Clinical, Immunological, and Genetic Features in 49 Patients With ZAP-70 Deficiency: A Systematic Review. Frontiers in immunology 36 32431715
1998 T cell activation induced by novel gain-of-function mutants of Syk and ZAP-70. The Journal of biological chemistry 36 9624129
2022 TRIM25 and ZAP target the Ebola virus ribonucleoprotein complex to mediate interferon-induced restriction. PLoS pathogens 35 35533151
2017 The 3C protease of enterovirus A71 counteracts the activity of host zinc-finger antiviral protein (ZAP). The Journal of general virology 35 29182509
2005 In vivo correction of ZAP-70 immunodeficiency by intrathymic gene transfer. The Journal of clinical investigation 35 16075064
2000 Recent advances in the design and synthesis of SH2 inhibitors of Src, Grb2 and ZAP-70. Current medicinal chemistry 35 10911019
2011 Disruption of HLA-DR raft, deregulations of Lck-ZAP-70-Cbl-b cross-talk and miR181a towards T cell hyporesponsiveness in leprosy. Molecular immunology 33 21453975
2020 Porcine reproductive and respiratory syndrome virus Nsp4 cleaves ZAP to antagonize its antiviral activity. Veterinary microbiology 31 33035816
2006 ZAP-70 mRNA quantification in B-cell chronic lymphocytic leukaemia. European journal of haematology 29 16519700
2002 TCR/CD3 down-modulation and zeta degradation are regulated by ZAP-70. Journal of immunology (Baltimore, Md. : 1950) 29 12165490
1999 Interdomain B in ZAP-70 regulates but is not required for ZAP-70 signaling function in lymphocytes. Molecular and cellular biology 29 9858619
1994 Immunodeficiency diseases. Multiple roles for ZAP-70. Current biology : CB 29 7953563
2019 HTLV-1 contains a high CG dinucleotide content and is susceptible to the host antiviral protein ZAP. Retrovirology 28 31842935
2012 ZAP inhibits murine gammaherpesvirus 68 ORF64 expression and is antagonized by RTA. Journal of virology 28 23255809
2000 A peptide library approach identifies a specific inhibitor for the ZAP-70 protein tyrosine kinase. Molecular cell 27 11090635
2018 Intensity and duration of TCR signaling is limited by p38 phosphorylation of ZAP-70T293 and destabilization of the signalosome. Proceedings of the National Academy of Sciences of the United States of America 26 29440413
2004 ZAP is a CRM1-dependent nucleocytoplasmic shuttling protein. Biochemical and biophysical research communications 26 15358138
2004 ZAP-70 expression in B-cell hematologic malignancy is not limited to CLL/SLL. American journal of clinical pathology 26 15487457
2020 ZAP-70 Shapes the Immune Microenvironment in B Cell Malignancies. Frontiers in oncology 25 33194762
2015 Nuclear matrix protein Matrin 3 is a regulator of ZAP-mediated retroviral restriction. Retrovirology 25 26129669
2004 T-cell receptor-induced phosphorylation of the zeta chain is efficiently promoted by ZAP-70 but not Syk. Blood 25 15059847
2015 Modification by covalent reaction or oxidation of cysteine residues in the tandem-SH2 domains of ZAP-70 and Syk can block phosphopeptide binding. The Biochemical journal 24 25287889
2014 Characterisation of chicken ZAP. Developmental and comparative immunology 24 24877657
2005 ZAP-70 in B cell malignancies. Leukemia & lymphoma 24 16263570
1996 Mechanism of activation for Zap-70 catalytic activity. Proceedings of the National Academy of Sciences of the United States of America 24 8901551
2022 The Role of ZAP and TRIM25 RNA Binding in Restricting Viral Translation. Frontiers in cellular and infection microbiology 23 35800389
2015 Integration of innate into adaptive immune responses in ZAP-70-positive chronic lymphocytic leukemia. Blood 23 26508782
1997 A dual participation of ZAP-70 and scr protein tyrosine kinases is required for TCR-induced tyrosine phosphorylation of Sam68 in Jurkat T cells. European journal of immunology 23 9464824
2007 Analogous regulatory sites within the alphaC-beta4 loop regions of ZAP-70 tyrosine kinase and AGC kinases. Biochimica et biophysica acta 21 17977811
2006 Clinical implications of ZAP-70 expressionin chronic lymphocytic leukemia. Cytometry. Part B, Clinical cytometry 21 16906580
2005 Distribution and ZAP-70 expression of WHO lymphoma categories in Shanxi, China: a review of 447 cases using a tissue microarray technique. Applied immunohistochemistry & molecular morphology : AIMM 21 16280661
2021 T cell receptor-dependent S-acylation of ZAP-70 controls activation of T cells. The Journal of biological chemistry 20 33482200