| 2010 |
USP46 (and its paralog USP12) deubiquitinates both histone H2A and H2B, preferring nucleosomal substrates; WDR48 (a WD40-repeat protein) binds USP46/USP12 and is required for their histone deubiquitination activity in vitro and in vivo. |
In vitro deubiquitination assay with nucleosomal substrates, co-immunoprecipitation, Xenopus overexpression/knockdown with ChIP |
The Journal of biological chemistry |
High |
21183687
|
| 2011 |
USP-46 deubiquitinates the C. elegans glutamate receptor GLR-1, preventing its lysosomal degradation and maintaining its synaptic abundance; loss of usp-46 increases ubiquitinated GLR-1 and decreases GLR-1 levels in the ventral nerve cord. |
Genetic loss-of-function (usp-46 mutants), ubiquitination assays, epistasis with GLR-1 ubiquitination-blocking and MVB/lysosome degradation-blocking mutations, behavioral assays |
The Journal of neuroscience |
High |
21273419
|
| 2011 |
USP46 possesses intrinsic deubiquitinating enzyme activity cleavable against Ub52 (GST-Ub52 model substrate); deletion of Lys92 reduces this activity by ~27%, providing molecular basis for the behavioral phenotype of Usp46 mutant mice. |
In vitro USP cleavage assay using GST-Ub52 substrate, comparison of wild-type versus Lys92-deletion mutant USP46 |
PloS one |
Medium |
22043315
|
| 2012 |
USP46 binds PHLPP1 and PHLPP2 and directly removes polyubiquitin chains from PHLPP in vitro and in cells, stabilizing PHLPP and leading to decreased Akt phosphorylation, reduced colon cancer cell proliferation, and decreased tumorigenesis in vivo. |
Co-immunoprecipitation, in vitro deubiquitination assay, ubiquitination assay in cells, knockdown/overexpression with proliferation and xenograft assays |
Oncogene |
High |
22391563
|
| 2013 |
C. elegans WDR-20 and WDR-48 bind USP-46 and stimulate its catalytic deubiquitinating activity in vitro; overexpression of WDR-20/WDR-48 increases GLR-1 abundance and reduces ubiquitin-GLR-1 conjugates in vivo in a USP-46-dependent manner. |
In vitro DUB activity assay, co-immunoprecipitation, C. elegans genetics (loss-of-function and overexpression), ubiquitination assay, behavioral assays |
The Journal of biological chemistry |
High |
24356955
|
| 2015 |
USP46 is the deubiquitinating enzyme for mammalian AMPA receptors (AMPARs); AMPARs undergo K63-linked ubiquitination, and USP46 deubiquitinates AMPARs in vitro and in vivo, reducing their degradation and increasing surface AMPAR levels and synaptic strength. |
In vitro deubiquitination assay, ubiquitination assays in heterologous cells and neurons, RNAi knockdown, surface biotinylation, mEPSC recording |
Journal of neurochemistry |
High |
26077708
|
| 2015 |
The EBV nuclear proteins EBNA3A and EBNA3B associate with the USP46 deubiquitylation complex (containing WDR48 and WDR20); WDR48 mediates EBNA3 association with the DUB complex, and WDR48/USP46 are recruited to the p14(ARF) promoter in an EBNA3C-dependent manner. |
Tandem affinity purification, mass spectrometry, co-immunoprecipitation, chromatin immunoprecipitation (ChIP) |
PLoS pathogens |
Medium |
25855980
|
| 2018 |
The HPV high-risk E6 oncoprotein selectively recruits USP46 to deubiquitinate and stabilize Cdt2/DTL (a CRL4Cdt2 E3 ligase component); stabilized Cdt2 reduces levels of the epigenetic writer Set8, promoting HPV-transformed cell proliferation. |
Co-immunoprecipitation, ubiquitination assay, knockdown/overexpression, xenograft tumor growth assay |
Molecular cell |
High |
30415951
|
| 2018 |
USP46 and its paralog USP12 regulate androgen receptor (AR) protein stability and the AR-AKT-MDM2-P53 signalling pathway in prostate cancer; the anti-androgen galeterone targets USP12/USP46 to reduce full-length AR protein levels (but not AR splice variants). |
Small-molecule inhibition (galeterone), USP12/USP46 knockdown, Western blotting for AR/AKT/MDM2/P53, cell proliferation assays in multiple prostate cancer models |
Oncotarget |
Medium |
29861848
|
| 2020 |
WDR-48 (WDR48/UAF1) promotes USP-46 protein stability by binding it and preventing its ubiquitination and proteasomal degradation; a WDR-48 variant with disrupted USP-46 binding cannot stabilize USP-46, indicating binding is required. |
Proteasome inhibition assay, ubiquitination assay of USP-46, cycloheximide chase, siRNA knockdown of wdr48, point-mutant WDR-48 analysis in mammalian cells and C. elegans |
The Journal of biological chemistry |
High |
32587090
|
| 2020 |
USP46 stabilizes PHLPP1 by antagonizing its ubiquitination, thereby inhibiting AKT signaling and suppressing lung cancer cell proliferation; AKT inhibitor treatment reverses the proliferative effects of USP46 knockdown. |
Co-immunoprecipitation, ubiquitination assay, overexpression/shRNA knockdown, cell proliferation assay, AKT pathway analysis by Western blot |
BioMed research international |
Medium |
33029497
|
| 2021 |
USP46 deubiquitinates and stabilizes MST1, leading to increased MST1 kinase activity that phosphorylates and promotes degradation of YAP1, thereby suppressing hepatocellular carcinoma cell proliferation and metastasis. |
Co-immunoprecipitation, ubiquitination assay, overexpression/knockdown, Western blot, in vitro and in vivo functional assays |
Experimental cell research |
Medium |
34029571
|
| 2021 |
WDR-20 and USP-46 cooperate in an activity-dependent manner to regulate local insertion of GLR-1 (AMPAR ortholog) into the neuronal cell surface; WDR-20 transcription is upregulated by chronic reduction of glutamate signaling, providing homeostatic compensation of surface GLR-1 levels via USP-46. |
C. elegans genetics (loss-of-function and overexpression), GLR-1::GFP surface imaging, local insertion rate measurement, transcriptional reporters, genetic epistasis |
The Journal of neuroscience |
High |
33622778
|
| 2023 |
The USP46–UAF1(WDR48)–WDR20 complex deubiquitylates the Wnt co-receptor LRP6, blocking its ubiquitylation by RNF43 and ZNRF3 ubiquitin ligases, increasing cell surface LRP6 levels, and promoting Wnt/β-catenin signaling; this mechanism is conserved in human cells, Xenopus, and zebrafish, and is required for Wnt-dependent intestinal organoid viability. |
Knockdown/overexpression, ubiquitination assay, size-exclusion chromatography, co-immunoprecipitation, Xenopus and zebrafish developmental assays, intestinal organoid assay |
Nature communications |
High |
37798301
|
| 2023 |
The Drosophila Usp46-Uaf1-Wdr20 deubiquitylase complex stabilizes the Wnt co-receptor Arrow/LRP6 by reducing its ubiquitylation and turnover, increasing cell surface Arrow levels and enhancing Wingless/Wnt signaling amplitude and spatial range; Usp46 loss disrupts Wingless-dependent developmental patterning and tissue homeostasis. |
Drosophila genetics (loss-of-function), ubiquitination assay, signaling reporter assays, immunofluorescence, epistasis with Wingless pathway components |
Nature communications |
High |
37798281
|
| 2024 |
USP46 stabilizes PTBP1 by inhibiting its K48-linked ubiquitination and degradation; elevated PTBP1 increases the PKM2/PKM1 ratio, promotes glycolysis, and drives tamoxifen resistance in breast cancer cells. |
Co-immunoprecipitation, ubiquitination assay (K48-linked), overexpression/knockdown, Western blot, glycolysis assay, cell proliferation assay |
Biochimica et biophysica acta. Molecular basis of disease |
Medium |
38176460
|
| 2024 |
The USP12/USP46-WDR48-WDR20 ternary deubiquitinating complex removes ubiquitin from the cytoplasmic tail of internalized β1 integrin (Itgb1) in early endosomes, preventing ESCRT-mediated sorting and lysosomal degradation of Itgb1 and stabilizing its cell surface levels. |
Genetic screen, proximity-dependent biotin identification (BioID), co-immunoprecipitation, ubiquitination assay, surface level assays |
bioRxivpreprint |
Medium |
|
| 2025 |
USP46 binds and deubiquitinates HIF-1α, enhancing HIF-1α protein stability and transcriptional activity of downstream glycolytic enzyme genes, thereby promoting glycolysis and cardiac hypertrophy. |
Co-immunoprecipitation, ubiquitination assay, overexpression/knockdown in cardiomyocytes and mouse model, Western blot, metabolic profiling (lactate, pyruvate, ATP) |
Pathology, research and practice |
Medium |
40328177
|
| 2025 |
USP46 interacts with and deubiquitinates the transcription factor POU4F1, stabilizing it; stabilized POU4F1 binds the HPSE promoter to increase heparanase expression, promoting ECM remodeling and neural cell migration relevant to Hirschsprung disease. |
IP-MS, GST pull-down, co-immunoprecipitation, ubiquitination assay, ChIP-qPCR, luciferase reporter assay, transwell migration assay |
Acta biochimica et biophysica Sinica |
Medium |
40251903
|
| 2025 |
USP46 interacts with and stabilizes SNX5 (a ferroptosis promoter) through deubiquitination, promoting ferroptosis in ischemia/reperfusion-treated neuronal cells; SNX5 knockdown abolishes the ferroptosis-promoting effect of USP46. |
Mass spectrometry identification of USP46 interactors, co-immunoprecipitation, ubiquitination assay, OGD/R cell model, knockdown epistasis, rat I/R model |
Experimental neurology |
Medium |
39909216
|
| 2025 |
USP46 loss in podocytes causes cytosolic translocation and aggregation of TDP-43; USP46-specific knockout mice develop spontaneous albuminuria. Acarbose was identified as a USP46 agonist that reduces TDP-43 aggregation and podocyte injury in diabetic nephropathy mice in a USP46-dependent manner. |
Podocyte-specific Usp46 knockout mice, immunofluorescence localization of TDP-43, pharmacological USP46 activation with acarbose, albuminuria measurement, in vivo diabetic model |
Science translational medicine |
Medium |
41811985
|
| 2025 |
USP46 interacts with and deubiquitinates ANK2, enhancing ANK2 protein stability; USP46-stabilized ANK2 promotes cardiomyocyte apoptosis, inflammation, and ferroptosis in myocardial infarction models. |
Cycloheximide chase assay, ubiquitination assay, co-immunoprecipitation, overexpression/knockdown in H/R cell model and I/R rat model |
Journal of biochemical and molecular toxicology |
Medium |
40878243
|
| 2025 |
USP46 interacts with and stabilizes BECN1 (beclin-1) by deubiquitination, promoting autophagy and thereby suppressing prostate cancer cell proliferation. |
Co-immunoprecipitation, cycloheximide chase, siRNA knockdown of BECN1, autophagy inhibition, cell proliferation and xenograft assays |
Biotechnology and applied biochemistry |
Medium |
40589294
|
| 2025 |
USP46 interacts with CIRBP (cold-inducible RNA-binding protein) to inhibit CIRBP ubiquitination and stabilize its expression, thereby promoting erastin-induced ferroptosis in BeWo trophoblasts. |
Co-immunoprecipitation, ubiquitination assay, overexpression/knockdown, ferroptosis assay with erastin |
Integrative biology |
Medium |
40608782
|
| 2025 |
In vivo proximity labeling (BioID via miniTurbo knock-in) in the mouse brain confirms that USP46 associates with known cofactors WDR48 and WDR20 in adult brain and reveals enrichment of postsynaptic proteins in the USP46 interactome; PLPP3 was identified as a novel proximal protein significantly downregulated in Usp46-KO hippocampus. |
miniTurbo knock-in mouse, in vivo BioID proximity labeling, mass spectrometry, Gene Ontology analysis, Usp46 knockout comparison |
Experimental animals |
Medium |
40790822
|