| 2010 |
USP12 and USP46 are histone H2A and H2B deubiquitinases that prefer nucleosomal substrates and deubiquitinate both histone H2A and H2B in vitro and in vivo. WDR48, a WD40 repeat-containing protein, interacts with USP12 and USP46 and is required for their histone deubiquitination activity. |
In vitro deubiquitination assay with nucleosomal substrates, co-immunoprecipitation, in vivo ubiquitination assays, Xenopus overexpression/knockdown |
The Journal of biological chemistry |
High |
21183687
|
| 2012 |
USP46 binds to PHLPP (both isoforms) and directly removes polyubiquitin chains from PHLPP in vitro and in cells, thereby stabilizing PHLPP, reducing its degradation, and suppressing Akt signaling in colon cancer cells. |
Co-immunoprecipitation, in vitro deubiquitination assay, ubiquitination assay in cells, shRNA knockdown, xenograft tumor models |
Oncogene |
High |
22391563
|
| 2009 |
A 3-bp deletion causing loss of Lys92 in Usp46 is a quantitative trait variant in mice that affects immobility behavior in tail suspension and forced swimming tests, and is implicated in regulation of GABA signaling; mutant mice show decreased muscimol-induced current in hippocampal CA1 neurons and reduced GAD67 expression, rescued by BAC transgene containing wild-type Usp46. |
QTL mapping, congenic/subcongenic strain analysis, BAC transgenic rescue, electrophysiology, behavioral testing |
Nature genetics |
High |
19465912
|
| 2015 |
USP46 deubiquitinates AMPA receptors (AMPARs) in vitro and in vivo, specifically removing K63-linked ubiquitin chains. Overexpression of USP46 reduces AMPAR ubiquitination, decreases AMPAR degradation, and increases surface AMPAR accumulation; knockdown elevates AMPAR ubiquitination and reduces surface AMPARs at synapses, resulting in decreased miniature excitatory postsynaptic current amplitude. |
In vitro deubiquitination assay, in vivo ubiquitination assay, RNAi knockdown, surface receptor assay, electrophysiology (mEPSC recording) in neurons |
Journal of neurochemistry |
High |
26077708
|
| 2011 |
In C. elegans, the deubiquitinating enzyme USP-46 regulates glutamate receptor GLR-1 abundance in the ventral nerve cord by deubiquitinating GLR-1 and preventing its lysosomal degradation. usp-46 mutants show decreased GLR-1, increased ubiquitinated GLR-1, and GLR-1-dependent behavioral defects; blocking GLR-1 ubiquitination or lysosomal degradation suppresses the usp-46 mutant phenotype. |
Genetic loss-of-function mutant analysis, ubiquitination assay, genetic epistasis with ubiquitination-deficient and lysosomal degradation-deficient mutants, behavioral assays |
The Journal of neuroscience |
High |
21273419
|
| 2013 |
The WD40-repeat proteins WDR-20 and WDR-48 bind to USP-46 and stimulate its catalytic deubiquitinating activity in vitro. In C. elegans, overexpression of WDR-20 and WDR-48 increases GLR-1 abundance and decreases ubiquitin-GLR-1 conjugates in a USP-46-dependent manner; wdr-20 and wdr-48 loss-of-function mutants show locomotion defects consistent with decreased glutamatergic signaling. |
In vitro deubiquitination activity assay, co-immunoprecipitation, C. elegans overexpression and loss-of-function genetics, behavioral assays, ubiquitin conjugate quantification |
The Journal of biological chemistry |
High |
24356955
|
| 2011 |
The Lys92 deletion in USP46 reduces its deubiquitinating enzyme activity by approximately 27% compared to wild-type, as measured by USP cleavage assay using GST-Ub52 as substrate, providing molecular basis for the behavioral phenotype of mutant mice. |
In vitro USP cleavage assay using GST-Ub52 substrate, comparison of wild-type vs. Lys92-deletion mutant enzyme activity |
PloS one |
Medium |
22043315
|
| 2012 |
Usp46 knockout mice exhibit short immobility in the tail suspension test comparable to the 3-bp deletion mutant, and this phenotype is reversed by the GABA-A receptor agonist nitrazepam in a flumazenil-sensitive manner, establishing that USP46 loss-of-function affects GABAergic signaling via GABA-A receptors. |
Usp46 knockout mouse generation, behavioral testing (TST), pharmacological manipulation with nitrazepam and flumazenil |
PloS one |
Medium |
22720038
|
| 2015 |
The EBNA3A, EBNA3B, and EBNA3C proteins of EBV form complexes with the USP46/USP12 deubiquitination complex components WDR48, WDR20; WDR48 is the primary mediator of EBNA3 association with the DUB complex. WDR48 and USP46 are recruited to the p14(ARF) promoter in an EBNA3C-dependent manner. |
Tandem affinity purification, mass spectrometry, co-immunoprecipitation, chromatin immunoprecipitation |
PLoS pathogens |
Medium |
25855980
|
| 2018 |
High-risk HPV E6 oncoprotein selectively recruits the cellular deubiquitinase USP46 to deubiquitinate and stabilize Cdt2/DTL. Stabilization of Cdt2 (a component of CRL4-Cdt2 E3 ligase) limits Set8 (an epigenetic writer) levels and promotes proliferation of HPV-transformed cells. USP46 knockdown inhibits HPV-transformed tumor xenograft growth. |
Co-immunoprecipitation, ubiquitination assay, shRNA knockdown, xenograft tumor model, epistasis analysis (E6-USP46-Cdt2-Set8 pathway) |
Molecular cell |
High |
30415951
|
| 2020 |
WDR-48, but not WDR-20, promotes USP-46 protein abundance by preventing its ubiquitination and proteasomal degradation. WDR-48 binding to USP-46 reduces ubiquitin-USP-46 conjugates and increases USP-46 half-life; a WDR-48 point mutant that cannot bind USP-46 fails to stabilize it. |
Ubiquitination assay, proteasome inhibitor treatment (nonadditive effect with WDR-48), WDR-48 point mutant analysis, siRNA knockdown in mammalian cells, in vivo C. elegans experiments, t1/2 measurement |
The Journal of biological chemistry |
High |
32587090
|
| 2021 |
USP46 stabilizes MST1 protein in hepatocellular carcinoma cells by directly binding to it and reducing its ubiquitination, thereby increasing MST1 kinase activity, which promotes YAP1 degradation and suppresses tumor growth and metastasis. |
Co-immunoprecipitation, ubiquitination assay, overexpression and knockdown experiments, in vitro and in vivo proliferation/metastasis assays, epistasis (YAP1 rescue) |
Experimental cell research |
Medium |
34029571
|
| 2021 |
WDR-20 and USP-46 work together with WDR-48 to promote surface levels of the C. elegans AMPAR GLR-1 by regulating local GLR-1 insertion into the neuronal surface. WDR-20 expression is activity-regulated: chronic reduction or increase in glutamate signaling reciprocally alters wdr-20 transcription and surface GLR-1 levels in a wdr-20-dependent manner. |
C. elegans genetics (loss-of-function mutants), live imaging of GLR-1 insertion rates, transcriptional reporter assays, behavioral assays, epistasis analysis |
The Journal of neuroscience |
Medium |
33622778
|
| 2023 |
The USP46 complex (USP46, UAF1/WDR48, WDR20) deubiquitylates the Wnt co-receptor LRP6, counteracting ubiquitylation by RNF43 and ZNRF3, thereby increasing steady-state cell surface LRP6 levels and promoting Wnt/β-catenin signaling. Wnt stimulation promotes association between the USP46 complex and LRP6. USP46 is required for Wnt-dependent intestinal organoid viability. |
Co-immunoprecipitation, ubiquitination assay, knockdown studies, size exclusion chromatography, Xenopus and zebrafish embryo knockdown, organoid viability assay |
Nature communications |
High |
37798301
|
| 2023 |
In Drosophila, the evolutionarily conserved Usp46-Uaf1-Wdr20 deubiquitylase complex stabilizes the Wnt co-receptor Arrow/LRP6 by reducing its ubiquitylation and turnover, increasing cell surface Arrow levels and enhancing sensitivity to Wingless morphogen signaling. Usp46 inactivation destabilizes Arrow, reduces Armadillo/β-catenin accumulation, and attenuates Wingless target gene activation, disrupting developmental patterning. |
Genetic loss-of-function in Drosophila, immunofluorescence for cell surface receptor levels, ubiquitination assay, target gene expression analysis, tissue patterning assays |
Nature communications |
High |
37798281
|
| 2020 |
USP46 suppresses lung cancer cell proliferation by antagonizing the ubiquitination of PHLPP1, resulting in PHLPP1 stabilization and inhibition of AKT signaling. This was demonstrated by co-immunoprecipitation and ubiquitination assays; AKT inhibition reversed the effects of USP46 knockdown. |
Co-immunoprecipitation, ubiquitination assay, siRNA knockdown, AKT inhibitor epistasis, cell proliferation assay |
BioMed research international |
Medium |
33029497
|
| 2024 |
USP46 stabilizes PTBP1 in tamoxifen-resistant breast cancer cells by inhibiting its K48-linked ubiquitination degradation, as shown by co-immunoprecipitation and ubiquitination assay. Stabilized PTBP1 increases the PKM2/PKM1 ratio, promotes glycolysis, and enhances tamoxifen resistance. |
Co-immunoprecipitation, K48-ubiquitination assay, USP46 overexpression/knockdown, glycolysis detection assay, drug resistance assays |
Biochimica et biophysica acta. Molecular basis of disease |
Medium |
38176460
|
| 2024 |
In black carp, bcUSP46 interacts with bcTBK1, stabilizes TBK1 by eliminating K48-linked ubiquitination of TBK1, and enhances TBK1-mediated interferon promoter activity and antiviral gene expression. Overexpression of bcUSP46 enhances IFN pathway activation while knockdown inhibits it. |
Co-immunoprecipitation, immunofluorescence colocalization, K48-ubiquitination assay, overexpression/knockdown, IFN promoter reporter assay |
Developmental and comparative immunology |
Medium |
38522716
|
| 2025 |
USP46 binds to HIF-1α, reduces its ubiquitination, and stabilizes HIF-1α protein, thereby promoting HIF-1α transcriptional activity and downstream glycolytic gene expression, which contributes to cardiac hypertrophy. USP46 knockdown decreases HIF-1α levels and glycolysis, attenuating hypertrophy. |
Co-immunoprecipitation, ubiquitination assay, USP46 overexpression/knockdown, metabolic profiling (lactate, pyruvate, ATP), mouse cardiac hypertrophy model |
Pathology, research and practice |
Medium |
40328177
|
| 2025 |
USP46 interacts with and deubiquitinates SNX5 (a ferroptosis promoter) to stabilize it, thereby promoting ferroptosis in I/R-treated neuronal cells. Knockdown of SNX5 abolishes the ferroptosis-promoting effect of USP46 overexpression. |
Mass spectrometry for interactor identification, co-immunoprecipitation, ubiquitination assay, USP46 overexpression/knockdown, SNX5 knockdown epistasis, rat cerebral I/R model |
Experimental neurology |
Medium |
39909216
|
| 2025 |
USP46 interacts with ANK2 (Ankyrin2) and enhances its protein stability by deubiquitination, as shown by cycloheximide chase and ubiquitination assays. Stabilized ANK2 promotes cardiomyocyte apoptosis, inflammation, and ferroptosis in myocardial infarction models; ANK2 overexpression reverses the protective effect of USP46 knockdown. |
Co-immunoprecipitation, cycloheximide chase assay, ubiquitination assay, USP46/ANK2 knockdown/overexpression, rat I/R model |
Journal of biochemical and molecular toxicology |
Medium |
40878243
|
| 2025 |
USP46 interacts with CIRBP (cold-inducible RNA-binding protein) and inhibits its ubiquitination, thereby stabilizing CIRBP and sensitizing trophoblast cells to erastin-induced ferroptosis. |
Immunoprecipitation, ubiquitination assay, USP46 overexpression/knockdown, CIRBP rescue experiments, ferroptosis assay |
Integrative biology |
Medium |
40608782
|
| 2025 |
USP46 interacts with the transcription factor POU4F1 via direct binding (confirmed by IP-MS, GST pull-down, and co-immunoprecipitation) and stabilizes POU4F1 by deubiquitination, increasing POU4F1 binding to the HPSE promoter, enhancing heparanase (HPSE) expression, ECM remodelling, and neural cell migration. |
IP-MS, GST pull-down, co-immunoprecipitation, ubiquitination assay, ChIP-qPCR, luciferase reporter assay, transwell migration assay |
Acta biochimica et biophysica Sinica |
Medium |
40251903
|
| 2025 |
USP46 interacts with and stabilizes BECN1 by deubiquitination in prostate cancer cells, promoting autophagy and suppressing cell proliferation. Knockdown of BECN1 or autophagy inhibition partially reverses the anti-proliferative effect of USP46 overexpression. |
Co-immunoprecipitation, cycloheximide chase assay, BECN1 siRNA epistasis, autophagy inhibition, cell proliferation assay, xenograft model |
Biotechnology and applied biochemistry |
Medium |
40589294
|
| 2025 |
In a knock-in mouse model expressing miniTurbo fused to endogenous Usp46, proximity labeling identified USP46-associated proteins in the adult brain including known cofactors WDR48 and WDR20. Gene Ontology analysis showed enrichment in postsynaptic pathways. PLPP3 was identified as significantly downregulated in hippocampus of Usp46-knockout mice. |
miniTurbo-BioID knock-in mouse, proximity-dependent biotin labeling, mass spectrometry, Usp46-knockout mouse hippocampal proteomics |
Experimental animals |
Medium |
40790822
|
| 2026 |
Loss of USP46 in podocytes causes cytosolic translocation and aggregation of TDP-43, leading to podocyte injury. USP46 is required for podocyte homeostasis, and the drug acarbose acts as a USP46 agonist that reduces TDP-43 aggregation and protects against diabetic nephropathy. |
Podocyte-specific Usp46 knockout mouse, TDP-43 localization assay (fractionation/imaging), acarbose treatment, albuminuria measurement, diabetic mouse model |
Science translational medicine |
Medium |
41811985
|