| 1993 |
Brn-3a encodes two protein isoforms (long and short); the long form containing an intact N-terminal domain (~100 aa conserved among class IV POU factors) is required for oncogenic transformation of primary fibroblasts, whereas the short form (lacking 84 N-terminal residues) cannot transform. Brn-3b can suppress the oncogenic activity of Brn-3a(l) when co-transfected, acting as an inhibitor. |
Focus-formation assay in primary fibroblasts; co-transfection of long vs. short isoforms and Brn-3a/Brn-3b combinations; identification of conserved N-terminal domain by sequence analysis |
Nucleic acids research |
Medium |
8290353
|
| 1995 |
Brn-3a activates the alpha-internexin promoter via its N-terminal domain, while activation of an artificial promoter containing a synthetic Brn-3a binding site requires only the POU domain. Thus Brn-3a contains two functionally distinct transactivation domains whose activity depends on the target promoter context. Brn-3b represses the alpha-internexin promoter and blocks Brn-3a activation. |
Co-transfection reporter assays with chimeric Brn-3a/Brn-3b constructs in neuronal and non-neuronal cells; deletion and domain-swap analysis |
The Journal of biological chemistry |
High |
7852360
|
| 1995 |
The short isoform of Brn-3b (Brn-3b(s)) directly interacts with Brn-3a(l) in solution, preventing Brn-3a(l) from forming stable complexes with octamer-related DNA sequences. This heterodimer is transcriptionally inactive and disrupts preformed Brn-3a(l)-DNA complexes, explaining the antagonistic functional relationship between these isoforms. |
EMSA (gel mobility shift assay); GST pulldown and in vitro binding studies; co-transfection transcription assays |
The Journal of biological chemistry |
High |
8537352
|
| 1996 |
Targeted deletion of Brn-3a causes loss of neurons in the trigeminal ganglia, medial habenula, red nucleus, and inferior olivary nucleus, but not in retina or dorsal root ganglia. In trigeminal and dorsal root ganglia (but not retina), loss of Brn-3a markedly reduces expression of Brn-3b and Brn-3c, indicating that Brn-3a positively regulates these paralogous factors in somatosensory neurons. |
Targeted gene deletion in mice; histological analysis; immunohistochemistry; genetic epistasis (Brn-3a KO effect on Brn-3b/3c expression) |
Proceedings of the National Academy of Sciences of the United States of America |
High |
8876243
|
| 1996 |
The two activation domains of Brn-3a have distinct activities that are dependent on the context of the binding site rather than differences in the target sequence itself. A single-stranded DNA preference for Brn-3a binding was demonstrated for two distinct Brn-3a binding sites. |
Co-transfection reporter assays with Brn-3a deletion constructs; EMSA with single- and double-stranded DNA; chimeric promoter analysis |
The Journal of biological chemistry |
Medium |
8621561
|
| 1997 |
Brn-3a overexpression in undifferentiated ND7 neuronal cells induces neuronal process outgrowth and activates genes encoding synaptic proteins. These effects are primarily dependent on the POU domain (which also serves as an activation domain), and a single amino acid change in the POU homeodomain of Brn-3a to its Brn-3b equivalent abolishes neurite outgrowth induction. Brn-3b does not induce these effects. |
Stable overexpression of Brn-3a, Brn-3b, isolated POU domain, and point mutants in ND7 cells; morphological assessment of neurite outgrowth; co-transfection gene expression assays |
Molecular and cellular biology |
High |
8972215
|
| 1997 |
Brn-3a overexpression coordinately upregulates all three neurofilament (NF-L, NF-M, NF-H) gene promoters, whereas Brn-3b has no effect. This activation is mediated by the POU domain, and a single amino acid change in the POU homeodomain converts Brn-3b into an activator of neurofilament promoters. |
Co-transfection reporter assays with neurofilament promoters; Western blot and RT-PCR for endogenous protein/mRNA; domain-swap and point mutagenesis |
The Journal of biological chemistry |
High |
9261145
|
| 1998 |
Brn-3a directly activates the Bcl-2 P2 promoter in neuronal cells through a specific binding site in the promoter; this activation increases Bcl-2 protein levels. The Brn-3a binding site in the P2 promoter is required for maximal activation and for the response during ND7 cell differentiation. |
Co-transfection reporter assays; EMSA; Western blot for BCL-2 protein; stable Brn-3a overexpression lines; primary DRG neurons |
The Journal of biological chemistry |
High |
9642226
|
| 1998 |
Brn-3a and Brn-3b POU domains interact with the DNA-binding domain of the estrogen receptor (ER) independently of ligand. In estradiol-stimulated cells, Brn-3b strongly activates an ERE-containing promoter whereas Brn-3a has a mild inhibitory effect. A single amino acid change in the first helix of the Brn-3a POU homeodomain to the Brn-3b equivalent converts its mild repression to Brn-3b-like activation. |
GST pulldown assay; yeast two-hybrid; co-transfection reporter assays with ERE-containing promoter; point mutagenesis of POU homeodomain |
Molecular and cellular biology |
High |
9448000
|
| 1999 |
Brn-3a strongly activates Bcl-2 promoter activity and this activation is inhibited by p53. p53 requires DNA-binding activity for this inhibitory effect (DNA-binding mutants of p53 do not inhibit). Brn-3a and p53 bind to adjacent sites in the Bcl-2 p2 promoter and directly interact in vitro and in vivo; this interaction is mediated by the POU domain of Brn-3a and the DNA-binding domain of p53. The inhibitory effect is specific to Bcl-2 p1/p2 promoters and not observed on other Brn-3a-activated promoters. |
Co-transfection reporter assays; in vitro GST pulldown; co-immunoprecipitation in vivo; EMSA; promoter deletion analysis |
The Journal of biological chemistry |
High |
10329733
|
| 1999 |
Brn-3a controls survival and differentiation of trigeminal neurons by regulating expression of all three Trk receptors. In Brn-3a-null mice, TrkC-expressing neurons are almost absent from birth, TrkB neurons are transiently elevated then lost, and TrkA expression progressively declines after E12.5, leading to massive apoptosis peaking at E15.5. Surviving neurons predominantly express c-ret and can be sustained by GDNF but not NGF, indicating Brn-3a does not regulate GDNF receptor expression. |
Brn-3a knockout mice; immunohistochemistry for Trk receptors; TUNEL apoptosis assay; in vitro neurotrophic factor survival assays on KO neurons; temporal staging |
Development (Cambridge, England) |
High |
10357931
|
| 2001 |
Brn-3a is a transcriptional regulator of soma size, neuronal migration, and axon pathfinding in the inner ear. Absence of Brn-3a causes downregulation of TrkC, parvalbumin, and Brn-3b; selective loss of TrkC-expressing spiral ganglion neurons (phenocopying TrkC-/- mice); and severe retardation of axon projections to the cochlea and posterior vertical canal by E13.5, as well as misrouting of efferent axons. |
Brn-3a knockout mouse analysis; immunohistochemistry; DiI axon tracing; temporal staging; comparison with TrkC KO phenotype |
Development (Cambridge, England) |
High |
11493560
|
| 2001 |
Brn-3a directly activates the Bcl-xL promoter in sensory but not sympathetic neurons; antisense reduction of Brn-3a reduces Bcl-xL expression; overexpression of Brn-3a in DRG in vivo (sciatic nerve injury model) enhances both Bcl-xL expression and neuronal survival. |
Co-transfection reporter assays; antisense oligonucleotides; in vivo Brn-3a overexpression via injection; Western blot; survival counting in DRG |
Molecular and cellular neurosciences |
Medium |
11273642
|
| 2001 |
Brn-3a minimal promoter in the Bcl-xL locus is activated by Brn-3a and this activation is specifically blocked by p53. The same promoter sequences required for basal activity mediate both Brn-3a activation and p53 repression. A second upstream Bcl-xL promoter is also activated by Brn-3a and repressed by p53. |
Co-transfection reporter assays with Bcl-xL promoter deletions; co-expression of Brn-3a and p53 |
Nucleic acids research |
Medium |
11713302
|
| 2001 |
Sensory axon growth defects (excessive/premature branching, failure to innervate whisker follicles) precede neuronal death in Brn-3a null mice. These defects resemble those in semaphorin 3A and neuropilin-1 null mice; however, neuropilin-1 expression is maintained in Brn-3a-null sensory neurons, indicating Brn-3a controls axon pathfinding through other downstream genes. |
Brn-3a KO crossed to LacZ reporter transgene; whole-mount beta-galactosidase histochemistry for axon visualization; immunohistochemistry for neuropilin-1; temporal analysis of phenotype vs. cell death |
The Journal of neuroscience : the official journal of the Society for Neuroscience |
High |
11160433
|
| 2001 |
Overexpression of Brn-3a in cultured trigeminal and DRG sensory neurons enhances survival after NGF withdrawal and activates the endogenous Bcl-2 gene; reducing Brn-3a levels with antisense impairs survival of these neurons. The protective effect is absent in sympathetic neurons. Brn-3b can promote early-stage trigeminal neuron survival but with less temporal breadth than Brn-3a. |
Primary neuronal cultures from TG and DRG; overexpression via plasmid transfection; antisense reduction; NGF withdrawal survival assay; Bcl-2 protein measurement |
The Journal of biological chemistry |
Medium |
11053412
|
| 2002 |
Brn-3a abolishes p53-mediated activation of the pro-apoptotic Bax promoter and Bax protein expression, while cooperating with p53 to maximally activate the p21(CIP1/Waf1) promoter. At the cellular level, Brn-3a antagonizes p53-induced apoptosis but cooperates with p53 to induce cell cycle arrest. |
Co-transfection reporter assays with Bax and p21 promoters; Western blot for Bax and p21 protein; apoptosis and cell cycle assays |
Oncogene |
Medium |
12203124
|
| 2003 |
Brn-3a directly binds to specific sites in a 457 bp enhancer that regulates TrkA expression in embryonic sensory neurons. Mutagenesis of these Brn-3a binding sites in the enhancer abolishes appropriate reporter transgene expression in sensory neurons in vivo. Using Bax-KO mice to uncouple cell death from TrkA downregulation confirmed that Brn-3a is required for maintaining TrkA transcriptional activity independently of neurotrophin-dependent survival. |
EMSA; transgenic reporter mice with mutagenized enhancer; Bax-KO genetic background epistasis; in vivo transgene expression analysis |
Development (Cambridge, England) |
High |
12810599
|
| 2003 |
Brn-3a negatively autoregulates its own expression by binding to conserved sites within an 11 kb upstream enhancer. In Brn-3a(+/-) mice, expression of the remaining allele is upregulated to near wild-type levels (gene dosage compensation), while transgenic overexpression of Brn-3a suppresses the endogenous gene. |
LacZ reporter transgenes; in vivo chromatin-binding analysis; comparison of Brn-3a protein levels in +/+, +/-, and -/- mice; transgenic overexpression |
Development (Cambridge, England) |
High |
12441296
|
| 2003 |
EWS (Ewing's Sarcoma protein) interacts with Brn-3a via the POU domain and the RNA-binding domain of EWS (in vitro), and EWS inhibits Brn-3a-mediated activation of the Bcl-xL promoter. |
Yeast two-hybrid screen; in vitro GST pulldown; co-transfection reporter assays |
Cancer biology & therapy |
Medium |
12432261
|
| 2004 |
HIPK2 physically interacts with Brn-3a, promotes Brn-3a DNA binding, but suppresses Brn-3a-dependent transcription of brn3a, trkA, and bcl-xL target genes. HIPK2 overexpression induces apoptosis in sensory neurons, while HIPK2 KO increases Brn-3a, TrkA, and Bcl-xL expression and reduces apoptosis in the trigeminal ganglion. |
Co-immunoprecipitation; EMSA; co-transfection reporter assays; HIPK2 overexpression in primary sensory neurons; HIPK2 targeted deletion mouse; immunohistochemistry; TUNEL |
The Journal of cell biology |
High |
15492043
|
| 2004 |
Brn-3a abolishes p53-mediated transcription of the pro-apoptotic gene Noxa. EMSA studies show Brn-3a is associated with p53 when p53 is bound to the Noxa promoter. ChIP confirms Brn-3a association with the wild-type but not mutant Noxa promoter in cells. Co-expression of Brn-3a with p53 reduces endogenous Noxa protein in ND7 neuronal cells. In Brn-3a-/- embryos, both Bax and Noxa proteins are elevated at E14.5, preceding the wave of neuronal apoptosis. |
Co-transfection reporter assays; EMSA; ChIP; Western blot for endogenous Noxa and Bax; Brn-3a KO embryo tissue analysis |
The Journal of biological chemistry |
High |
15598651
|
| 2004 |
The N-terminal transcriptional activation domain of Brn-3a is essential for neuronal survival in vivo, while the POU domain is essential for neurite outgrowth in vivo. These two functions are thus controlled by separable domains of the protein. |
In vivo gene manipulation (domain-specific Brn-3a constructs introduced into mice); neuronal survival quantification; neurite morphology assessment |
Neuroreport |
Medium |
15194866
|
| 2004 |
EWS/Fli-1 (but not EWS alone) interacts with Brn-3a via the C-terminal POU domain. EWS/Fli-1 overexpression specifically inhibits Brn-3a-associated growth arrest and neurite outgrowth and blocks Brn-3a-dependent activation of p21 and SNAP-25 transcription, while EWS more effectively antagonizes the Bcl-2 upregulation function of Brn-3a. |
In vitro GST pulldown; co-transfection reporter assays for p21 and SNAP-25; neurite outgrowth and growth arrest assays in neuronal cells |
Oncogene |
Medium |
15021903
|
| 2003 |
Rin, a neuron-specific small GTP-binding protein, physically interacts with the N-terminal domain of Brn-3a (identified by yeast two-hybrid) and modulates Brn-3a N-terminal-dependent activation of the egr-1 promoter. |
Yeast two-hybrid screen; co-transfection reporter assays for egr-1 promoter; N-terminal domain of Brn-3a as bait |
Oncogene |
Low |
12934100
|
| 2005 |
Brn-3a-expressing RGCs project specifically to the principal retinothalamic/retinocollicular pathway (thalamocortical and collicular visual pathways) and are absent from RGCs serving accessory optic, pretectal, and hypothalamic (circadian) pathways. Brn-3a RGC axons preferentially project to the outer shell of the dorsal lateral geniculate nucleus contralaterally. |
Targeted knock-in of tau/beta-galactosidase axonal tracer into the Brn3a locus; anterograde axon tracing; Brn-3a KO analysis of laterality |
The Journal of neuroscience : the official journal of the Society for Neuroscience |
High |
16354917
|
| 2006 |
Brn-3a is a direct repressor of NeuroD1 and NeuroD4 (pro-neurogenic genes) in embryonic sensory neurons, and also directly modulates its own expression. Locus-wide ChIP in embryonic trigeminal neurons shows that in vivo Brn-3a binding correlates with evolutionary conservation of genomic regions and with active histone modifications (H3 acetylation); not all high-affinity sites are occupied in vivo. |
Locus-wide ChIP in embryonic trigeminal neurons; microarray expression profiling of Brn3a-null ganglia; correlation of binding with histone marks and evolutionary conservation |
Developmental biology |
High |
17196582
|
| 2006 |
Brn-3a and Klf7 synergistically activate the TrkA enhancer in vitro. In double Brn-3a-/-;Klf7-/- mutants, TrkA expression is severely reduced at E12.5 and completely lost by birth (more severe than either single mutant), demonstrating cooperative regulation of endogenous TrkA expression required for nociceptive sensory neuron survival. |
Co-transfection reporter assays (synergistic activation); Brn-3a-/-;Klf7-/- double KO mice; in vivo TrkA expression by immunohistochemistry; genetic epistasis |
Developmental biology |
High |
17011544
|
| 2008 |
The MEK1/2-ERK1/2 signaling pathway regulates Brn-3a N-terminal transcriptional activity during retinoic acid (RA)-mediated neuronal differentiation. Phosphorylation of Brn-3a at serine-122 (and threonine-39) is required for RA-induced neurite outgrowth and N-terminal transactivation of the Galanin promoter. MEK inhibitors block both RA-induced Galanin activation and Brn-3a N-terminal activity; constitutively active MEK1 (but not MEK5) is sufficient to increase Brn-3a activity. |
Site-directed mutagenesis of Brn-3a (S122A, T39A); co-transfection reporter assays with Galanin promoter; pharmacological MEK inhibition; constitutively active MEK1/MEK5 expression; neurite outgrowth assay in ND7 cells |
Brain research |
Medium |
19135033
|
| 2008 |
Brn-3a physically interacts with TAp73 and ΔNp73 isoforms and co-localizes with them in sensory neurons. Brn-3a antagonizes TAp73-mediated transactivation of pro-apoptotic Bax but cooperates with TAp73 to activate p21(CIP1/Waf1). Co-expression with ΔNp73 increases apoptotic protection. The C-terminal region (aa 425-494) of TAp73 is critical for Brn-3a to repress Bax transactivation. |
Co-immunoprecipitation; immunofluorescence co-localization; co-transfection reporter assays with Bax and p21 promoters; TAp73 C-terminal deletion constructs |
Cell death and differentiation |
Medium |
18421303
|
| 2009 |
Brn-3a-expressing habenular neurons project exclusively to the interpeduncular nucleus. In Brn-3a null embryos, the fasciculus retroflexus forms correctly but habenular neurons fail to innervate their targets. Microarray analysis of Brn-3a null embryos reveals that Brn-3a regulates an extensive program of habenula-enriched genes. The orphan nuclear receptor Nurr1/Nr4a2 is downstream of Brn-3a and mediates expression of a subset of Brn-3a-regulated habenular transcripts. |
Brn-3a KO mice; axon tracing; microarray gene expression profiling; genetic epistasis (Nurr1 expression in Brn-3a nulls); bioinformatic analysis |
The Journal of neuroscience : the official journal of the Society for Neuroscience |
High |
19906978
|
| 2009 |
Brn-3a and Brn-3b control overlapping but distinct aspects of RGC development. Brn-3a deletion alters dendritic stratification and the monostratified:bistratified RGC ratio with little effect on central projections. Brn-3b deletion leads to RGC transdifferentiation and loss, axon defects, and disrupted central projections affecting multiple visually driven behaviors. Both factors are thus required for programming distinct aspects of RGC diversity. |
Conditional KO alleles of Brn-3a and Brn-3b with visualization of individual cells; dendritic morphology and stratification analysis; anterograde axon tracing; behavioral testing (visual tasks) |
Neuron |
High |
19323995
|
| 2010 |
Brn-3a acts upstream of Runx transcription factors to specify sensory neuron subtypes in the trigeminal ganglion. In Brn-3a-/- embryos, Runx3 expression is never initiated in TrkC+ neurons and Runx1 expression is severely reduced in TrkA+ neurons. A Brn-3a-VP16 dominant transactivator increases Runx3 mRNA, and Brn-3a binds in vivo by ChIP to a conserved upstream enhancer within H3-acetylated chromatin at the Runx3 locus. |
Brn-3a KO mice; Brn-3a-VP16 transgenic mice; ChIP for Brn-3a at Runx3 locus; immunohistochemistry for Trk receptors and Runx factors; histone modification analysis |
Neural development |
High |
20096094
|
| 2012 |
Brn-3a is required for DRG sensory neuron subtype specification and for central axon projections into the spinal cord. Brn-3a-null DRGs show excessive early generation of TrkB+ and TrkC+ neurons plus double-positive (TrkA+/TrkB+ and TrkA+/TrkC+) cells, followed by loss of TrkB+, TrkC+ and parvalbumin+ neurons and increases in CGRP+ and c-ret+ neurons. TrkA+ afferents fail to enter the dorsal horn and TrkC+ proprioceptive projections to the ventral horn are impaired. Runx1 expression is dramatically downregulated, suggesting Brn-3a acts through Runx1 for specification. |
Brn-3a single and Brn-3a;Brn-3b double KO mice; immunohistochemistry for Trk receptors, parvalbumin, CGRP, Runx1; DiI axon tracing; temporal staging |
Developmental biology |
High |
22326227
|
| 2019 |
Pou4f1 defines a subpopulation of modiolar-side type I spiral ganglion neurons (SGNs). Conditional deletion of Pou4f1 in SGNs after E13 (avoiding early pathfinding/apoptosis phenotypes) alters Ca2+ channel activation in inner hair cells (IHCs), increasing voltage sensitivity and eliminating the normal modiolar-to-pillar gradient of active zone Ca2+ influx strength, without changing SGN numbers, morphology, or synapse distribution. |
Conditional KO of Pou4f1 in SGNs (tamoxifen-inducible Cre); immunohistochemistry; Ca2+ imaging of IHC active zones; patch-clamp electrophysiology of IHC Ca2+ channels |
The Journal of neuroscience : the official journal of the Society for Neuroscience |
High |
31085606
|
| 2020 |
Pou4f1 (Brn3a) is a Smad3 target gene and key downstream regulator of macrophage-myofibroblast transition (MMT) in renal fibrosis. ChIP confirmed Pou4f1 as a Smad3 target. Microarray defined a Pou4f1-dependent fibrogenic gene network driving TGF-β1/Smad3-induced MMT. Silencing Pou4f1 in TGF-β1-stimulated bone marrow-derived macrophages, then adoptively transferring them, prevented restoration of MMT and fibrosis in macrophage-depleted mice. |
ChIP (Smad3 binding to Pou4f1 locus); microarray gene expression; siRNA silencing; in vitro MMT assay; adoptive transfer of BMDMs into macrophage-depleted mice; two mouse models of renal fibrosis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
32788346
|
| 2020 |
POU4F1 promotes BRAF-inhibitor resistance in melanoma by transcriptionally activating MEK expression to re-activate the MAPK/ERK pathway and by increasing MITF expression. |
POU4F1 overexpression and knockdown in melanoma cells; Western blot for MEK, ERK, MITF; luciferase reporter assays for MEK promoter; xenograft mouse models |
Cell death & disease |
Medium |
32532957
|
| 2022 |
HDAC2 represses BRN3A expression in melanocytes and melanoma by maintaining deacetylated chromatin at a distal enhancer of the BRN3A gene. Selective HDAC2 siRNA knockdown increases H3K27ac levels at this BRN3A distal enhancer (confirmed by ChIP-Seq) and upregulates BRN3A expression. |
siRNA knockdown of individual HDACs; ChIP-Seq for H3K27ac; pharmacological HDAC inhibitors (class-selective and isoform-selective); RT-PCR and Western blot for BRN3A |
International journal of molecular sciences |
Medium |
35055045
|
| 2024 |
ISL1 and POU4F1 directly interact in developing cochleovestibular ganglion (CVG) neurons and cooperate to regulate expression of CVG-specific genes. Compound Isl1;Pou4f1 double KO causes near-complete loss of spiral ganglion neurons—more severe than either single KO—with defects in migration, axon pathfinding, and survival. POU4F1 directly binds cis-regulatory elements of Fgf10, Pou4f2, Epha5 (promoters) and Eya1 and Ntng2 (enhancers). |
Isl1 and Pou4f1 single and double KO mice; immunohistochemistry; co-immunoprecipitation of ISL1-POU4F1; ChIP for POU4F1 at target loci; gene expression profiling |
The Journal of neuroscience : the official journal of the Society for Neuroscience |
High |
38267260
|
| 2024 |
POU4F1 is required for G1/S cell cycle progression in basal-like breast cancer (BLBC) through direct binding at the promoters of CDK2 and CCND1. POU4F1 also maintains BLBC identity by repressing ESR1 (ERα) expression through CDK2-mediated EZH2 phosphorylation and subsequent H3K27me3 modification at the ESR1 promoter. POU4F1 promoter activation in BLBC is maintained by the DNA demethylase TET1, which reconfigures bivalent chromatin to an active state. |
POU4F1 KO in BLBC cells; ChIP for POU4F1 at CDK2 and CCND1 promoters; cell cycle and proliferation assays; H3K27me3 ChIP at ESR1; Western blot for ERα and EZH2 phosphorylation; TET1 knockdown and DNA methylation analysis |
Advanced science (Weinheim, Baden-Wurttemberg, Germany) |
High |
38491910
|
| 2023 |
Pou4f1 acts as a transcription factor for STAT3, directly regulating STAT3 transcription. In glioma cells, POU4F1 overexpression or STAT3 silencing suppresses XHP-induced pyroptosis, placing Pou4f1 upstream of STAT3 in this pathway. |
Dual-luciferase reporter assay for STAT3 promoter; co-IP of POU4F1-STAT3; Western blot; ChIP; siRNA/overexpression in glioma cell lines; in vivo glioma model |
Functional & integrative genomics |
Medium |
37962640
|
| 2023 |
Pou4f1 directly binds to the Tbr1 locus (exon 6 and 3'UTR flanking region) and to the Jam2 promoter region; Pou4f1 is required for expression of Tbr1 and Jam2 in J-RGCs. The Pou4f1-bound element in Tbr1 exon 6 has enhancer activity capable of directing reporter expression in J-RGCs, establishing a Pou4f1-Tbr1-Jam2 transcriptional cascade for J-RGC subtype formation. |
CUT&RUN (Cleavage Under Targets and Tagmentation); conditional KO of Pou4f1; reporter assay for enhancer activity; immunohistochemistry for Tbr1 and Jam2; in situ hybridization |
Frontiers in ophthalmology |
High |
38469155
|
| 2024 |
Runx3 and Brn3a co-bind to numerous genomic loci in early TrkC proprioceptive neurons, primarily at distally located enhancer regions. In activated and suppressed neuronal Runx3 high-confidence target genes, Runx3 cooperates mainly with Brn3a to regulate gene expression through these distant enhancers, while suppression of non-neuronal immune genes is managed by Runx3 without Brn3a. |
CUT&RUN for Runx3, Brn3a, Isl1, and H3K27Ac; ATAC-seq; RNA-seq of heterozygous vs. homozygous P2-Runx3 TrkC neurons; bioinformatic co-occupancy analysis |
PLoS genetics |
Medium |
39715266
|
| 2025 |
USP18 stabilizes POU4F1 protein through deubiquitination. POU4F1 in turn promotes transcription of PRKAA2 (AMPK-α2) by binding its promoter (ChIP and dual-luciferase confirmed). USP18-mediated oncogenic effects in lung adenocarcinoma are reversed by POU4F1 knockdown, and POU4F1 regulates cell behaviors via PRKAA2 upregulation. |
Immunoprecipitation and ubiquitination assay (USP18-POU4F1 interaction); ChIP and dual-luciferase reporter for POU4F1 at PRKAA2 promoter; siRNA/overexpression; xenograft mouse model |
BMC cancer |
Medium |
40122823
|