| 1993 |
The two LIM domains of ISL1 inhibit DNA binding by the homeodomain in vitro and in vivo; truncation or denaturation/renaturation of the LIM domains relieves this inhibition, and LIM domains from ISL1 can inhibit the homeodomain of an unrelated protein (Ubx), demonstrating a general cis-inhibitory mechanism. |
In vitro DNA binding assays with bacterially expressed proteins, truncation mutants, and in vivo reporter assays |
The EMBO journal |
High |
7901000
|
| 1997 |
ISL1 is required cell-autonomously in pancreatic endodermal cells for the generation of all endocrine islet cells, and is also required in dorsal mesenchymal cells for formation of dorsal pancreatic mesenchyme (and thereby for dorsal exocrine differentiation); provision of wild-type mesenchyme rescues exocrine but not endocrine differentiation in ISL1-null explants. |
ISL1 knockout mice analyzed by histology; in vitro mesenchyme rescue experiments |
Nature |
High |
9000074
|
| 2000 |
ISL1 directly interacts in vivo and in vitro with the estrogen receptor (ER); interaction is mediated by the ER ligand-binding domain and is strengthened by estradiol; ISL1 prevents ER dimerization and inhibits ER DNA-binding activity; ISL1 LIM domains specifically inhibit ER-driven transcription in some promoter contexts, while ER can coactivate ISL1 in others. |
Co-immunoprecipitation (in vivo), GST pulldown (in vitro), dual immunohistochemistry, gel shift (EMSA), reporter assays |
Molecular endocrinology |
High |
11043578
|
| 2007 |
Beta-catenin (Wnt/β-catenin pathway) directly regulates the ISL1 promoter in cardiovascular progenitors; ablation of beta-catenin in ISL1-expressing progenitors abolishes ISL1 expression and disrupts cardiogenesis, demonstrating beta-catenin is genetically upstream of ISL1. |
ChIP demonstrating beta-catenin occupancy of Isl1 promoter; conditional beta-catenin knockout in ISL1-Cre lineage with phenotypic analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
17519333
|
| 2007 |
Wnt/β-catenin signaling promotes renewal and inhibits differentiation of ISL1+ cardiovascular progenitors; in vivo activation of β-catenin in ISL1+ cells causes their massive accumulation and OFT defects; deletion of β-catenin in ISL1+ cells reduces mitosis; the microenvironment can be reconstituted by a Wnt3a-secreting feeder layer. |
Genetic gain- and loss-of-function of β-catenin in ISL1-Cre mouse; ES cell and embryonic ISL1+ progenitor culture with Wnt3a feeder layer |
Cell stem cell |
High |
18371348
|
| 2007 |
Wnt/β-catenin signaling in ISL1+ anterior heart field (AHF) progenitors promotes their expansion through upregulation of specific FGF ligands (Fgf3, Fgf10, Fgf16, Fgf20); loss of Wnt signaling in AHF reduces ISL1+ progenitors and FGF signaling; gain of Wnt increases both. |
Conditional Wnt loss- and gain-of-function in ISL1-Cre mouse; gene expression analysis; definition of Wnt-FGF signaling axis |
The Journal of clinical investigation |
High |
17607356
|
| 2008 |
Conditional knockout of ISL1 in the developing retina causes apoptosis of retinal ganglion cells (RGCs); Isl1 controls a distinct set of downstream genes (identified by microarray) that are downstream of Math5 and partly overlap with but are distinct from Pou4f2 targets; Isl1 positively regulates Pou4f2 expression. |
Conditional ISL1 knockout in retina (Cre/loxP); microarray; histology and apoptosis assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
18460603
|
| 2008 |
Conditional knockout of ISL1 in sensory neurons causes loss of nociceptive marker TrkA and Runx1, near-absence of cutaneous innervation, and prolonged expression of early developmental regulators; later ISL1 excision reduces transcripts related to specific sensory functions without reactivating early genes, establishing ISL1 as central to the transition from sensory neurogenesis to subtype specification. |
Conditional ISL1 knockout strategies (early and late); microarray analysis of mutant ganglia; immunohistochemistry |
Nature neuroscience |
High |
18849985
|
| 2008 |
Notch1 positively, and β-catenin negatively, regulate ISL1 expression in cardiac progenitor cells (CPCs); disruption of ISL1 in CPCs leads to their expansion in vivo and in ES cells; ISL1 is required for CPC differentiation into cardiomyocytes and smooth muscle cells, but not endothelial cells. |
Conditional Notch1 and β-catenin genetic manipulation in CPCs; Isl1 conditional knockout; ES cell assays |
Nature cell biology |
High |
19620969
|
| 2009 |
ISL1 synergistically activates insulin gene transcription with BETA2; protein-protein interaction between ISL1 and BETA2 is mediated by the LIM domains of ISL1 and the bHLH domain of BETA2; deletion of both LIM domains enhances transcriptional activation of the insulin gene, revealing the homeodomain as the primary transactivating domain; ISL1 binds the A3/4 box of the rat insulin I promoter through its homeodomain. |
Co-immunoprecipitation; deletion mutant luciferase reporter assays; EMSA (gel shift) with homeodomain binding |
Journal of molecular biology |
High |
19619559
|
| 2009 |
ISL1-deficient endocrine precursors fail to mature into functional islet cells; MafA is identified as a direct transcriptional target of ISL1 in pancreatic islet cells. |
Conditional ISL1 deletion in pancreatic epithelium (Cre/loxP from E13.5); ChIP; gene expression analysis |
Diabetes |
High |
19502415
|
| 2011 |
ISL1 directly binds the promoters of c-Myc and CyclinD1 to activate their transcription, thereby promoting adult pancreatic islet cell proliferation; knockdown of ISL1 increases apoptosis and causes G1 arrest in pancreatic islet cells. |
ChIP assay; luciferase reporter assays; ISL1 knockdown with cell cycle and apoptosis analysis |
PloS one |
Medium |
21829621
|
| 2011 |
Isl1 regulates establishment of the posterior hindlimb field upstream of the Hand2-Shh morphoregulatory pathway; conditional inactivation of Isl1 in hindlimb-forming region causes downregulation of Hand2 and severe impairment of Shh expression specifically in the hindlimb, but not the forelimb. |
Conditional ISL1 knockout using Hoxb6Cre; in situ hybridization; phenotypic analysis of limb development |
Development (Cambridge, England) |
High |
22438573
|
| 2011 |
ISL1 is required for nuclear accumulation of β-catenin and activation of the β-catenin pathway in the lateral plate mesoderm; β-catenin in turn maintains ISL1 expression; together they act upstream of Fgf10 to regulate hindlimb outgrowth. |
Conditional ISL1 and β-catenin knockout in lateral plate mesoderm; nuclear/cytoplasmic fractionation; gene expression analysis |
Development (Cambridge, England) |
High |
21937598
|
| 2011 |
Isl-1 regulates Arx transcription in pancreatic islet alpha-cells by directly binding two conserved noncoding regulatory regions (Re1 and Re2) in the Arx locus; ISL1 is the first known transcriptional activator of Arx in alpha-cells. |
ChIP localization of ISL1 binding sites; luciferase reporter assays; ISL1 overexpression and knockdown; site-directed mutation experiments |
The Journal of biological chemistry |
High |
21388963
|
| 2012 |
Ldb1 is the primary coregulator of ISL1 in developing and adult islet cells; endocrine cell-specific removal of Ldb1 phenocopies ISL1 conditional knockout; ChIP analysis shows Ldb1 co-occupies ISL1 target gene promoters (MafA, Arx, insulin, Glp1r) alongside ISL1. |
Conditional Ldb1 knockout (Cre/loxP); ChIP; gene expression analysis |
Diabetes |
High |
23193182
|
| 2012 |
The Drosophila ISL1 ortholog Tailup (Tup) functions in cardiac specification upstream of Tin, Pnr and Dorsocross; tup cooperates with these cardiac transcription factors in heart cell specification; Tup in ectoderm regulates cardiogenesis via distinct LIM-domain-interacting proteins from those in mesoderm. |
tup mutant analysis; genetic interaction studies; germ layer-specific loss-of-function and rescue experiments; gain-of-function analyses in Drosophila |
Development (Cambridge, England) |
Medium |
19088091
|
| 2012 |
Nkx2-5 directly binds to an ISL1 enhancer and represses ISL1 transcriptional activity; this direct repression of ISL1 by Nkx2-5 is necessary for proper development of the ventricular myocardial lineage; overexpression of ISL1 shifts cardiomyocyte identity toward nodal/pacemaker subtype at the expense of ventricular identity. |
ChIP showing Nkx2-5 binding to ISL1 enhancer; conditional Nkx2-5 KO in ISL1+ lineage; ISL1 overexpression in mouse ESCs and Xenopus embryos; electrophysiology |
Stem cells (Dayton, Ohio) |
High |
25524439
|
| 2012 |
ISL1 directly regulates Fgf10 gene expression in the anterior second heart field by binding to a 1.7-kb intronic regulatory element; this is antagonized by Nkx2-5, which represses Fgf10 (and ISL1 expression) in differentiating myocardium. |
Transgenic reporter assays; ChIP demonstrating direct ISL1 binding; gain- and loss-of-function genetic backgrounds; site-directed mutagenesis of regulatory element |
Proceedings of the National Academy of Sciences of the United States of America |
High |
23093675
|
| 2012 |
CIP (cardiac ISL1-interacting protein) directly interacts with ISL1 and represses ISL1's transcriptional activity on MEF2C; CIP overexpression represses agonist-induced cardiomyocyte hypertrophy; CIP expression is reduced in hypertrophic cardiomyocytes. |
Yeast two-hybrid screening; Co-IP; domain mapping; luciferase reporter assays; CIP overexpression in cardiomyocyte hypertrophy model |
Circulation research |
High |
22343712
|
| 2012 |
ISL1 and Lhx3 form a hexameric complex (Isl1-Lhx3-hexamer) in spinal motor neurons that is a potent and specific inducer of motor neuron fate; an equimolar ratio of Isl1:Lhx3 and the LIM domain of Lhx3 are critical; the Isl1-Lhx3 fusion protein drives motor neuron transcriptome and suppresses interneuron programs. |
Isl1-Lhx3 fusion protein expression in chick spinal cord and mouse ES cells; RNA-seq; suppression of interneuron gene expression |
Proceedings of the National Academy of Sciences of the United States of America |
High |
22343290
|
| 2013 |
ISL1 is required for correct development of the striatonigral (direct) pathway in the striatum; conditional ISL1 inactivation results in fewer striatonigral neurons, reduced substantia nigra projections, and involvement of PlexinD1-Semaphorin 3e signaling in diencephalic cells bordering the internal capsule; ISL1 conditional mutants show hyperlocomotion and blunted response to psychostimulants. |
Conditional ISL1 knockout in telencephalon and ventral forebrain; genetic fate mapping; behavioral analysis; axon projection analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
24082127
|
| 2013 |
ISL1 specifies striatonigral neuron identity by a dual mechanism: promoting striatonigral gene expression (substance P, prodynorphin, PlexinD1) and simultaneously repressing striatopallidal genes (Drd2, proenkephalin, A2aR, Gpr6); ectopic ISL1 expression in striatopallidal neurons is sufficient to repress Drd2-EGFP. |
Conditional ISL1 knockout; in utero electroporation for ISL1 overexpression; Drd2-EGFP transgenic mice; gene expression analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
24351932
|
| 2013 |
Shox2 directly transcriptionally activates ISL1 in the sinoatrial node through two specific SHOX2-binding sites within intron 2 of the ISL1 locus; overexpression of ISL1 rescues the bradycardia phenotype caused by Shox2 knockdown in zebrafish. |
Luciferase reporter assays; EMSA; microarray/gene expression analysis; zebrafish rescue experiment |
Basic research in cardiology |
High |
23455426
|
| 2013 |
Leptin suppresses ISL1 expression and insulin secretion via JAK-STAT3 signaling; ISL1 is a direct downstream target of STAT3; the effect of leptin on insulin secretion is lost in Isl1-inducible knockout mice. |
In vivo and in vitro leptin treatment; Isl1-inducible knockout mouse model; gene expression analysis |
The Journal of biological chemistry |
Medium |
23504315
|
| 2014 |
ISL1 forms two related but distinct hexameric complexes — Isl1-Lhx3-hexamer in spinal motor neurons and Isl1-Lhx8-hexamer in forebrain cholinergic neurons — that both bind and activate a suite of cholinergic pathway genes (acetylcholine synthesizing enzymes and transporters) to specify cholinergic neuronal identity; conditional ISL1 inactivation causes loss of cholinergic neurons in both regions. |
Conditional ISL1 KO in spinal cord and forebrain; genome-wide ChIP-seq of Isl1-Lhx3 and Isl1-Lhx8 complexes; luciferase reporter assays; ES cell differentiation |
PLoS genetics |
High |
24763339
|
| 2014 |
ISL1 directly occupies regulatory elements of Pdx1 and Slc2a2 (Glut2) in postnatal beta-cells (ChIP-seq and luciferase reporter assays); postnatal beta-cell-specific ablation of ISL1 impairs insulin secretion without reducing beta-cell mass, demonstrating a distinct function for ISL1 in mature beta-cell function. |
Tamoxifen-inducible beta-cell-specific ISL1 knockout; ChIP-seq; luciferase reporter assays; glucose tolerance and insulin secretion assays |
Diabetes |
High |
25028525
|
| 2014 |
ISL1 directly targets Gata3 to regulate pyloric development; ISL1 deficiency leads to near-complete absence of the pyloric outer longitudinal muscle layer; ISL1 binding to and transactivation of the Gata3 locus demonstrated by ChIP, luciferase assays, and EMSA. |
Tamoxifen-inducible ISL1 knockout; ChIP; luciferase reporter assays; EMSA |
BMC biology |
High |
24674670
|
| 2015 |
ISL1 is essential for survival, proliferation, and function of sinoatrial node (SAN) pacemaker cells; ChIP with anti-ISL1 antibodies on FACS-purified SAN cells shows ISL1 directly binds genomic regions of L-type calcium channel subunit genes, Ank2, and Tbx3; RNA-seq identifies ISL1 as regulating ~one-third of SAN-specific genes. |
SAN-specific ISL1 conditional KO; FACS-purified SAN cells; RNA-seq; ChIP on purified pacemaker cells |
The Journal of clinical investigation |
High |
26193633
|
| 2015 |
Two transcription factors, Pou4f2 and ISL1, are jointly sufficient to specify the RGC fate; ectopic expression of both in Atoh7-null retina (which lacks RGCs) produces largely normal RGCs that survive to postnatal stages and are physiologically functional. |
Binary knockin-transgenic system for ectopic Pou4f2+Isl1 expression in Atoh7-null retina; electrophysiological recording; gene expression analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
25775587
|
| 2015 |
The Isl1-Lhx3 complex activates transcription of Isl1, Lhx3, and Lmo4 genes through direct binding to specific genomic loci, establishing a potent autoregulatory feedback loop; LMO4 produced by this loop blocks V2 interneuron-specifying Lhx3 complex, increasing Lhx3 available for the Isl1-Lhx3 complex. |
Genome-wide ChIP-seq; reporter assays in chick neural tube and mouse embryos; gain- and loss-of-function experiments |
eNeuro |
High |
28451636
|
| 2015 |
ISL1 expression in motor neurons is controlled by two distinct enhancers (CREST1/E1 and CREST2/E2): E1 is bound by Phox2 proteins (hindbrain) and by the Isl1-Lhx3 complex (spinal cord); E2 is activated by OC-1 in lateral motor column neurons innervating limb muscles; E2 is only found in tetrapods. |
Genome-wide ChIP-seq; GFP reporter assays in chick neural tube; comparative genomics; overexpression and binding assays |
PLoS genetics |
High |
26447474
|
| 2015 |
SSBP3 interacts with both Ldb1 and ISL1 in beta-cells (identified by cross-linked IP and mass spectrometry; confirmed by Co-IP in beta-cell lines and mouse/human islets); SSBP3 knockdown causes mRNA deficiencies at Ldb1-Isl1 target promoters (MafA, Glp1r), and SSBP3 occupies these promoters. |
Cross-linked immunoprecipitation + mass spectrometry; Co-IP; ChIP; SSBP3 knockdown gene expression analysis |
Molecular endocrinology |
High |
26495868
|
| 2018 |
In human ESC-based cardiac differentiation, ISL1 does not stabilize the cardiac precursor state but accelerates cardiomyocyte differentiation; ISL1 depletion delays cardiac differentiation and respecifies nascent cardiomyocytes from ventricular to atrial identity; ISL1 is antagonized by retinoic acid signaling via MEIS2, and ISL1 competes with the retinoic acid pathway at the atrial specifier NR2F1. |
ISL1 depletion in human ESC cardiac differentiation; transcriptome analysis; mechanistic analysis of retinoic acid/MEIS2/NR2F1 pathway interactions |
eLife |
Medium |
29337667
|
| 2018 |
ISL1 is required during sympathetic neuron development for fate determination, differentiation, repression of glial differentiation, proliferation (via cell cycle gene control), axon growth, and maintenance of noradrenergic (while repressing cholinergic) differentiation; ChIP-seq identifies direct ISL1 target genes including several implicated in neuroblastoma pathogenesis. |
Isl1 hypomorphic mouse line and neural crest-specific Isl1 knockout; RNA-seq; ISL1 ChIP-seq on sympathetic ganglia |
Cell death & disease |
High |
29445148
|
| 2019 |
ISL1 acts as a pioneer transcription factor in cardiac progenitor cells, binding to compacted chromatin; ISL1 works in concert with the Brg1-Baf60c-based SWI/SNF complex to establish permissive chromatin at cardiac lineage-specific loci (including both progenitor genes and cardiomyocyte structural genes), thereby establishing epigenetic memory of cardiomyocyte fate commitment. |
ISL1 hypomorphic mouse; genome-wide ISL1 binding (ChIP-seq); ATAC-seq; RNA-seq in cardiac progenitors; interaction with Brg1-Baf60c SWI/SNF complex |
Cell research |
High |
31024170
|
| 2019 |
ISL1 regulates Nkx2.1 transcription in midline epithelial cells (MECs, an ISL1+Nkx2.1+Sox2+ progenitor population) to orchestrate trachea-esophageal separation; lineage tracing shows MECs contribute to both tracheal and esophageal epithelium; deletion of the chromosomal region spanning ISL1 is found in human patients with tracheo-esophageal defects. |
Conditional ISL1 deletion in mice and Xenopus; Cre-based lineage tracing; gene expression analysis (Nkx2.1); human patient genotyping |
Developmental cell |
High |
31813798
|
| 2020 |
A 2.9-kb cis-regulatory enhancer at the ISL1 locus is specifically active in the cardiac inflow/SAN from E8.5 through SAN maturation; deletion of this enhancer causes SAN hypoplasia and sinus arrhythmias; SNPs near the syntenic human ISL1 enhancer associate with resting heart rate in GWAS. |
ATAC-seq on sorted SAN cells; transgenic reporter mice; enhancer deletion by CRISPR; zebrafish reporter assay |
Circulation research |
High |
33044128
|
| 2006 |
ISL1 interacts with HNF4alpha through the HNF4alpha AF-2 and F domains; ISL1 homeodomain and first LIM domain mediate the interaction; together they synergistically activate transcription of HNF1alpha, PPARalpha, and insulin I promoters; ISL1 can also recruit the cofactor CLIM2 to further enhance transcription. |
Co-immunoprecipitation; GST pulldown; domain mapping with deletion mutants; luciferase reporter assays; ChIP showing increased HNF4alpha loading |
Journal of molecular biology |
High |
17022998
|
| 2003 |
An alternatively spliced ISL1 isoform (ISL1-beta), lacking the C-terminal 23 amino acids, is a more potent transactivator of the insulin promoter than ISL1-alpha; ISL1-alpha undergoes phosphorylation, indicating post-translational regulation; both isoforms localize to the nucleus. |
cDNA cloning; transient transfection reporter assays; immunofluorescence localization; phosphorylation analysis |
Journal of molecular endocrinology |
Medium |
14664703
|
| 2018 |
ISL1 loss-of-function mutations (nonsense mutations causing truncation) abolish ISL1 transcriptional activity on the MEF2C promoter and nullify synergistic activation with TBX20, linking ISL1 mutations to congenital heart defects in humans. |
Sanger sequencing of CHD patients; dual-luciferase reporter assay |
Heart and vessels |
Medium |
30390123
|
| 2019 |
A novel ISL1 loss-of-function nonsense mutation (p.Tyr75*) abolishes ISL1 transcriptional activity and nullifies synergistic activation with TBX20 on the MEF2C promoter, and co-segregates with double outlet right ventricle in a family. |
Sanger sequencing; dual-luciferase reporter assay |
International heart journal |
Low |
31484864
|
| 2017 |
ISL1 regulates multiple signaling pathways (BMP, WNT, FGF) during external genitalia development; ChIP-seq identifies ISL1 targets including Bmp4, Fgf10, and Wnt5a; an essential function of ISL1 is to induce Bmp4-mediated apoptosis in genital mesenchyme; ISL1 deletion in genital mesenchyme causes epispadias-like phenotype and hydroureter. |
Conditional ISL1 knockout in genital mesenchyme; ChIP-seq; expression analysis; apoptosis assays |
Human molecular genetics |
High |
29126155
|
| 2022 |
ISL1 regulates molecular and cellular features of spiral ganglion (auditory) neurons including formation, migration, peripheral and central axonal wiring, and tonotopic organization; ISL1-knockout spiral ganglion neurons migrate ectopically and lose topographic projections; transcriptome analysis shows ISL1 regulates neurogenesis, axonogenesis, migration, neurotransmission, and synaptic communication. |
Conditional ISL1 knockout in spiral ganglion neurons (Neurod1-Cre); transcriptome analysis; anatomical and electrophysiological analysis of auditory pathway |
Proceedings of the National Academy of Sciences of the United States of America |
High |
36074819
|
| 2024 |
EphrinB2 promotes cardiac lymphatic endothelial cell proliferation and migration by activating CDK5, which phosphorylates and causes nuclear translocation of ISL1; nuclear ISL1 then enhances transcription of VEGFR3 (FLT4) by binding its promoter, driving lymphangiogenesis after myocardial infarction. |
EphrinB2 overexpression/deletion in mice; subcellular fractionation (nuclear translocation); ChIP/promoter binding assay for ISL1 at VEGFR3 promoter; VEGFR3 inhibitor pharmacology |
Signal transduction and targeted therapy |
Medium |
39557830
|