Affinage

TUBE1

Tubulin epsilon chain · UniProt Q9UJT0

Round 2 corrected
Length
475 aa
Mass
52.9 kDa
Annotated
2026-04-28
127 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TUBE1 (tubulin epsilon chain / delta-tubulin) is a centriole-associated tubulin family member that functions within a conserved tetrameric complex together with epsilon-tubulin, TEDC1, and TEDC2 to build and maintain centriole triplet microtubules, thereby enabling centriole maturation and inheritance across cell cycles (PMID:28906251, PMID:40067174). TUBE1 localizes to centrioles independently of cytoplasmic microtubules and is distinct in its distribution from gamma-tubulin and epsilon-tubulin within the centrosome (PMID:10620804). Loss of TUBE1 abolishes triplet microtubule formation, prevents recruitment of the central core protein POC5, and causes a futile cycle in which centrioles form but disintegrate each cell division — a phenotype suppressible by paclitaxel-mediated microtubule stabilization (PMID:28906251).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2000 Medium

    Establishing TUBE1 as a centriolar protein resolved its subcellular context: unlike gamma-tubulin, TUBE1 localizes to centrioles themselves rather than pericentriolar material, and it does so independently of microtubules, raising the question of what structural role it plays there.

    Evidence Immunofluorescence with microtubule-depolymerization controls in human cells

    PMID:10620804

    Open questions at the time
    • Single-lab observation without independent replication at this time
    • No functional perturbation to determine whether TUBE1 is required for centriole structure or duplication
    • Molecular partners at the centriole were unidentified
  2. 2017 High

    Loss-of-function analysis revealed that TUBE1 is essential for triplet microtubule formation: without it, centrioles lack triplets, fail to recruit the central core protein POC5, cannot mature, and undergo disintegration each cell cycle — establishing TUBE1 as a structural determinant of centriole integrity and inheritance.

    Evidence CRISPR knockout in human cells with electron microscopy ultrastructure, co-immunoprecipitation showing delta–epsilon tubulin interaction, and paclitaxel rescue of centriole stability

    PMID:28906251

    Open questions at the time
    • Whether TUBE1 acts as part of a larger complex beyond its interaction with epsilon-tubulin was unknown
    • Mechanism by which TUBE1 promotes triplet microtubule nucleation or stabilization was unresolved
    • No structural model of the TUBE1–epsilon-tubulin assembly
  3. 2025 High

    Identification of the TUBE1–epsilon-tubulin–TEDC1–TEDC2 tetramer defined the minimal functional unit: all four subunits are mutually required for centrosomal targeting and triplet microtubule formation, and loss of any component phenocopies TUBE1 deletion, establishing the complex as an obligate module for centriole architecture.

    Evidence CRISPR knockout of TEDC1/TEDC2 in human cells, ultrastructure expansion microscopy, reciprocal co-immunoprecipitation, and AlphaFold Multimer structural modeling

    PMID:40067174

    Open questions at the time
    • Biochemical reconstitution of the tetramer and direct demonstration of microtubule-modifying activity in vitro have not been performed
    • How the tetramer is specifically recruited to the centriole proximal end is unknown
    • Whether the tetramer directly nucleates the C-tubule or stabilizes pre-existing doublets remains unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct biochemical mechanism by which the TUBE1-containing tetramer promotes triplet microtubule formation — whether through nucleation, stabilization, or templating of the C-tubule — remains the central open question.
  • No in vitro reconstitution of triplet microtubule formation with purified tetramer
  • Atomic-resolution experimental structure of the tetramer is lacking
  • Relationship between tetramer stoichiometry at the centriole and triplet microtubule number is undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2
Localization
GO:0005815 microtubule organizing center 3
Pathway
R-HSA-1640170 Cell Cycle 2 R-HSA-1852241 Organelle biogenesis and maintenance 2
Partners
Complex memberships
TUBE1–TUBD1–TEDC1–TEDC2 tetramer

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 Human delta-tubulin (TUBE1) was identified as a centrosomal protein, localizing specifically to centrioles independently of microtubules. Its localization pattern is distinct from gamma-tubulin and epsilon-tubulin, placing it in association with centriole structures rather than the pericentriolar material. Immunofluorescence localization in human cells, microtubule depolymerization experiments to test microtubule-independence of centrosome association Nature cell biology Medium 10620804
2017 Delta-tubulin (TUBE1) is required for centriole triplet microtubule formation in human cells. Null mutant cells lacking delta-tubulin form centrioles that lack triplet microtubules, fail to recruit the central core protein POC5, fail to undergo centriole maturation, and undergo a futile cycle of centriole formation followed by disintegration each cell cycle. Delta-tubulin and epsilon-tubulin physically interact, indicating they act together to maintain triplet microtubule architecture and thereby enable centriole inheritance from one cell cycle to the next. Centriole disintegration in delta-tubulin null cells could be suppressed by paclitaxel treatment. CRISPR/Cas9 knockout of TUBD1 (delta-tubulin) in human cells, immunofluorescence, electron microscopy, co-immunoprecipitation of delta- and epsilon-tubulin, paclitaxel rescue experiments eLife High 28906251
2025 Delta-tubulin (TUBE1) forms a tetrameric complex with epsilon-tubulin, TEDC1, and TEDC2 that is required for centriole triplet microtubule architecture. Cells lacking TEDC1 or TEDC2 phenocopy delta-tubulin and epsilon-tubulin null cells, displaying centrioles without triplet microtubules, an expanded proximal region, absence of central core scaffold proteins (POC5), and a futile cycle of centriole elongation during G2 followed by fragmentation and disintegration during mitosis. All four proteins physically interact; TEDC1 and TEDC2 form a subcomplex independent of the tubulins. Delta-tubulin and epsilon-tubulin are mutually required with TEDC1/TEDC2 for centrosomal localization of all four components, consistent with an AlphaFold Multimer structural model of the tetramer. CRISPR/Cas9 knockout of TEDC1/TEDC2 in human cells, ultrastructure expansion microscopy (U-ExM), co-immunoprecipitation, AlphaFold Multimer structural modeling, immunofluorescence cell cycle staging eLife High 40067174

Source papers

Stage 0 corpus · 127 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2003 Tube morphogenesis: making and shaping biological tubes. Cell 531 12526790
1976 Vitamin deficiencies and neural tube defects. Archives of disease in childhood 443 1015847
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2015 DNA nanotechnology from the test tube to the cell. Nature nanotechnology 418 26329111
2013 The intracellular interactome of tetraspanin-enriched microdomains reveals their function as sorting machineries toward exosomes. The Journal of biological chemistry 413 23463506
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2017 Neural tube closure: cellular, molecular and biomechanical mechanisms. Development (Cambridge, England) 372 28196803
2010 Genetics and development of neural tube defects. The Journal of pathology 335 19918803
2008 Programming DNA tube circumferences. Science (New York, N.Y.) 315 18687961
2017 Isothermal Amplification for MicroRNA Detection: From the Test Tube to the Cell. Accounts of chemical research 274 28355077
2010 An update to the list of mouse mutants with neural tube closure defects and advances toward a complete genetic perspective of neural tube closure. Birth defects research. Part A, Clinical and molecular teratology 258 20740593
2007 Mouse mutants with neural tube closure defects and their role in understanding human neural tube defects. Birth defects research. Part A, Clinical and molecular teratology 250 17177317
2009 Genetics of human neural tube defects. Human molecular genetics 226 19808787
2018 Cancer of the ovary, fallopian tube, and peritoneum. International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics 218 30306591
1976 Etiologic heterogeneity of neural-tube defects. The New England journal of medicine 212 1107843
2019 A Fruitful Journey: Pollen Tube Navigation from Germination to Fertilization. Annual review of plant biology 195 30822112
2005 Epidemiology of neural tube defects. American journal of medical genetics. Part C, Seminars in medical genetics 182 15800877
2003 Epidemiology of neural tube defects. Epilepsia 181 12790881
2016 Neural tube morphogenesis in synthetic 3D microenvironments. Proceedings of the National Academy of Sciences of the United States of America 166 27742791
2006 Etiology, pathogenesis and prevention of neural tube defects. Congenital anomalies 163 16732763
2008 Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PloS one 148 18461144
2009 EB1 recognizes the nucleotide state of tubulin in the microtubule lattice. PloS one 134 19851462
2000 Delta-tubulin and epsilon-tubulin: two new human centrosomal tubulins reveal new aspects of centrosome structure and function. Nature cell biology 128 10620804
2010 Secretory cell outgrowth, PAX2 and serous carcinogenesis in the Fallopian tube. The Journal of pathology 119 20597068
2001 Actin and pollen tube growth. Protoplasma 119 11732066
2021 Paralog knockout profiling identifies DUSP4 and DUSP6 as a digenic dependence in MAPK pathway-driven cancers. Nature genetics 116 34857952
2000 Spina bifida and other neural tube defects. Current problems in pediatrics 113 11147289
1999 Oligomerisation of Tube and Pelle leads to nuclear localisation of dorsal. Mechanisms of development 111 10330490
1980 Feeding by tube enterostomy. Surgery, gynecology & obstetrics 107 6769170
2005 The microsporidian polar tube: a highly specialised invasion organelle. International journal for parasitology 103 16005007
2003 Epsilon-tubulin is required for centriole duplication and microtubule organization. Nature cell biology 100 12510196
2015 Peptide signalling during the pollen tube journey and double fertilization. Journal of experimental botany 99 26068467
2000 The role of Sonic hedgehog in neural tube patterning. Cellular and molecular life sciences : CMLS 85 11130176
2014 Pollen tube growth: where does the energy come from? Plant signaling & behavior 83 25482752
1994 Folic acid metabolism and mechanisms of neural tube defects. Ciba Foundation symposium 78 8005024
2015 SOD1 aggregation in ALS mice shows simplistic test tube behavior. Proceedings of the National Academy of Sciences of the United States of America 70 26221023
2015 The cytoskeleton in the pollen tube. Current opinion in plant biology 70 26550939
1996 Homocysteine and neural tube defects. The Journal of nutrition 69 8598561
1995 Malnutrition, tube feeding and pressure sores: data are incomplete. Journal of the American Geriatrics Society 69 7706638
2021 Actuation enhances patterning in human neural tube organoids. Nature communications 67 34045434
2021 Axial elongation of caudalized human organoids mimics aspects of neural tube development. Development (Cambridge, England) 66 34142711
2016 Maternal ENODLs Are Required for Pollen Tube Reception in Arabidopsis. Current biology : CB 66 27524487
2003 Pathobiology and genetics of neural tube defects. Epilepsia 64 12790882
2008 CB1 expression is attenuated in Fallopian tube and decidua of women with ectopic pregnancy. PloS one 63 19093002
2017 Inositol, neural tube closure and the prevention of neural tube defects. Birth defects research 61 27324558
2018 Chemical signaling for pollen tube guidance at a glance. Journal of cell science 59 29378835
2019 Pollen tube integrity regulation in flowering plants: insights from molecular assemblies on the pollen tube surface. The New phytologist 57 30556141
2014 Phytosulfokine peptide signaling controls pollen tube growth and funicular pollen tube guidance in Arabidopsis thaliana. Physiologia plantarum 57 25174442
2017 Structural basis for receptor recognition of pollen tube attraction peptides. Nature communications 55 29109411
2018 Radially patterned cell behaviours during tube budding from an epithelium. eLife 54 30015616
2015 TURAN and EVAN mediate pollen tube reception in Arabidopsis Synergids through protein glycosylation. PLoS biology 54 25919390
2011 Drosophila as a model for epithelial tube formation. Developmental dynamics : an official publication of the American Association of Anatomists 51 22083894
2005 HIV-1 Tat protein enhances microtubule polymerization. Retrovirology 51 15691386
2004 Investigations into the etiology of neural tube defects. Birth defects research. Part C, Embryo today : reviews 51 15662706
2000 Control of Shh activity and signaling in the neural tube. Developmental dynamics : an official publication of the American Association of Anatomists 51 11002335
2017 Centriole triplet microtubules are required for stable centriole formation and inheritance in human cells. eLife 50 28906251
2011 Neural tube patterning by Ephrin, FGF and Notch signaling relays. Development (Cambridge, England) 49 22110057
2009 Uncovering hidden treasures in pollen tube growth mechanics. Trends in plant science 49 19446491
2020 Architecture of the flexible tail tube of bacteriophage SPP1. Nature communications 47 33188213
2009 Diabetes and apoptosis: neural crest cells and neural tube. Apoptosis : an international journal on programmed cell death 47 19333760
2016 MARIS plays important roles in Arabidopsis pollen tube and root hair growth. Journal of integrative plant biology 46 27212106
2012 Epithelial fusion during neural tube morphogenesis. Birth defects research. Part A, Clinical and molecular teratology 46 22945349
2015 Mutant p53 expression in fallopian tube epithelium drives cell migration. International journal of cancer 44 25810107
1986 Human fallopian tube contains placental protein 14. American journal of obstetrics and gynecology 44 3518461
2015 Peptide signaling in pollen tube guidance. Current opinion in plant biology 42 26580200
2006 Rac function in epithelial tube morphogenesis. Developmental biology 41 16412417
1982 The microsporidian spore invasion tube. III. Tube extrusion and assembly. The Journal of cell biology 41 7119008
2021 Mechanics and hydraulics of pollen tube growth. The New phytologist 40 34492127
2014 TRPM7 regulates vascular endothelial cell adhesion and tube formation. American journal of physiology. Cell physiology 40 25472964
2008 Grainyhead genes and mammalian neural tube closure. Birth defects research. Part A, Clinical and molecular teratology 40 18683893
1994 Periconceptional folate and neural tube defect. The American journal of clinical nutrition 40 8304289
2014 RFX7 is required for the formation of cilia in the neural tube. Mechanisms of development 39 24530844
2005 Epithelial cell polarity genes are required for neural tube closure. American journal of medical genetics. Part C, Seminars in medical genetics 38 15800847
2018 Sonic hedgehog in vertebrate neural tube development. The International journal of developmental biology 37 29616731
2010 Centrosome-related genes, genetic variation, and risk of breast cancer. Breast cancer research and treatment 36 20508983
2019 Variants identified in PTK7 associated with neural tube defects. Molecular genetics & genomic medicine 35 30689296
2017 AP1G mediates vacuolar acidification during synergid-controlled pollen tube reception. Proceedings of the National Academy of Sciences of the United States of America 35 28559348
2015 Tumorigenesis and peritoneal colonization from fallopian tube epithelium. Oncotarget 35 25971410
2005 Non-multifactorial neural tube defects. American journal of medical genetics. Part C, Seminars in medical genetics 35 15800854
2018 Cell mechanics of pollen tube growth. Current opinion in genetics & development 34 29602058
2016 Molecular Signaling Pathways Controlling Vascular Tube Morphogenesis and Pericyte-Induced Tube Maturation in 3D Extracellular Matrices. Advances in pharmacology (San Diego, Calif.) 34 27451100
2010 Female gametophyte-controlled pollen tube guidance. Biochemical Society transactions 34 20298233
2018 E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. The FEBS journal 33 29676528
2016 Microtubules, polarity and vertebrate neural tube morphogenesis. Journal of anatomy 33 27025884
2012 Neural tube defects by NUAK1 and NUAK2 double mutation. Developmental dynamics : an official publication of the American Association of Anatomists 31 22689267
2005 HIV-1 Tat, apoptosis and the mitochondria: a tubulin link? Retrovirology 29 15698476
2019 Fallopian Tube Carcinoma. Journal of oncology practice 28 31283415
2013 Endothelial connexin32 enhances angiogenesis by positively regulating tube formation and cell migration. Experimental cell research 27 24333598
1998 Neural tube defects, vitamins and homocysteine. European journal of pediatrics 27 9587043
1997 Differentiation of the vertebrate neural tube. Current opinion in cell biology 27 9425355
2021 TP53 loss initiates chromosomal instability in fallopian tube epithelial cells. Disease models & mechanisms 26 34569598
2019 New developments in tube shunt surgery. Current opinion in ophthalmology 26 30562244
2020 Mechanics of Pollen Tube Elongation: A Perspective. Frontiers in plant science 25 33193543
2018 Glycolysis regulates pollen tube polarity via Rho GTPase signaling. PLoS genetics 25 29702701
2017 Genetic epidemiology of neural tube defects. Journal of pediatric rehabilitation medicine 25 29125517
2004 Expression of fractalkine in the Fallopian tube and of CX3CR1 in sperm. Human reproduction (Oxford, England) 24 14747189
1981 RNA, proteins and polyamines during tube growth in germinating apple pollen. Plant physiology 24 16661988
2017 Signaling Networks in Epithelial Tube Formation. Cold Spring Harbor perspectives in biology 23 28246178
2016 Nodal and FGF coordinate ascidian neural tube morphogenesis. Development (Cambridge, England) 23 27827820
2012 Apicobasal polarity and neural tube closure. Development, growth & differentiation 23 23277919
2008 Modeling neural tube defects in the mouse. Current topics in developmental biology 23 19186242
2018 Polymer tube nanoreactors via DNA-origami templated synthesis. Chemical communications (Cambridge, England) 22 29492501
2020 An ontology for developmental processes and toxicities of neural tube closure. Reproductive toxicology (Elmsford, N.Y.) 21 32926990
2016 Tube-Forming Assays. Methods in molecular biology (Clifton, N.J.) 21 27172951
2011 MIM regulates vertebrate neural tube closure. Development (Cambridge, England) 21 21471152
2022 Precision of morphogen gradients in neural tube development. Nature communications 20 35241686
2015 Nutri-epigenomic Studies Related to Neural Tube Defects: Does Folate Affect Neural Tube Closure Via Changes in DNA Methylation? Mini reviews in medicinal chemistry 20 26349489
2020 MiR-378a-3p Is Critical for Burkitt Lymphoma Cell Growth. Cancers 19 33261009
2017 Claudins in morphogenesis: Forming an epithelial tube. Tissue barriers 19 28837393
2014 Identification of putative fallopian tube stem cells. Reproductive sciences (Thousand Oaks, Calif.) 19 25305130
1999 Folate status and neural tube defects. BioFactors (Oxford, England) 19 10609896
2022 Cullin 3 Exon 9 Deletion in Familial Hyperkalemic Hypertension Impairs Cullin3-Ring-E3 Ligase (CRL3) Dynamic Regulation and Cycling. International journal of molecular sciences 18 35563538
2021 A polarity pathway for exocyst-dependent intracellular tube extension. eLife 18 33687331
2019 Advances in Eustachian tube function testing. World journal of otorhinolaryngology - head and neck surgery 18 31750424
2013 Systematic Analysis of the Functions of Lysine Acetylation in the Regulation of Tat Activity. PloS one 18 23826228
2001 Screening for neural tube defects. Clinics in perinatology 18 11499052
2020 A conserved acetylation switch enables pharmacological control of tubby-like protein stability. The Journal of biological chemistry 11 33187986
2024 The comprehensive SARS-CoV-2 'hijackome' knowledge base. Cell discovery 7 39653747
2021 Exome sequencing of child-parent trios with bladder exstrophy: Findings in 26 children. American journal of medical genetics. Part A 7 34355505
2025 A delta-tubulin/epsilon-tubulin/Ted protein complex is required for centriole architecture. eLife 6 40067174
2025 TRIM21 and OTUD6A orchestrate AKT K27-linked atypical ubiquitination to modulate cancer chemoresistance. Nature structural & molecular biology 0 41188598