| 2003 |
TIPIN was identified as a direct binding partner of mouse Timeless (mTIM) via yeast two-hybrid and co-immunoprecipitation. mTIM promotes nuclear localization of TIPIN, and TIPIN disrupts mTIM homo-multimeric complex formation, suggesting TIPIN regulates TIM activity. |
Yeast two-hybrid, co-immunoprecipitation, transfection/immunofluorescence |
Journal of molecular biology |
Medium |
12875843
|
| 2006 |
Human TIPIN and Timeless (TIM) interact through the N-terminal segments of each protein and form a stable complex throughout the cell cycle. Loss of either protein reduces the level and nuclear localization of the other, indicating mutual stabilization. Both proteins are found in chromatin-enriched fractions during S phase. Depletion of TIPIN causes radioresistant DNA synthesis and inhibits Chk1 phosphorylation in response to replication stress. TIPIN/TIM may also facilitate nuclear accumulation of Claspin under replication stress. |
Co-immunoprecipitation, siRNA knockdown, cell fractionation, immunofluorescence |
The Journal of biological chemistry |
High |
17102137
|
| 2006 |
TIPIN is a nuclear protein that associates with the replicative helicase. TIPIN and Timeless form a complex that maintains the protein levels of both; loss of one leads to loss of the other. TIPIN depletion renders cells sensitive to ionizing radiation and replication stress, causes spontaneous γ-H2AX foci (DSBs), and impairs efficient cell cycle arrest in response to DNA damage. |
siRNA knockdown, co-immunoprecipitation, immunofluorescence, cell cycle analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
17116885
|
| 2006 |
Mammalian TIM and TIPIN are replisome-associated proteins that co-localize with BrdU-positive replication sites. They interact with components of the endogenous replication fork complex and directly bind the 34 kDa subunit of RPA. TIPIN (ortholog of S. cerevisiae Csm3p / S. pombe Swi3p) and TIM are functional orthologs of replisome-associated yeast counterparts. |
Co-immunoprecipitation, immunofluorescence, pulldown assays |
Journal of molecular biology |
High |
17141802
|
| 2007 |
TIPIN interacts with RPA and RPA-coated DNA; RPA promotes loading of TIPIN onto DNA. Depletion of TIPIN reverses the UV-induced intra-S checkpoint (replicon initiation inhibition) and attenuates UV-induced inhibition of DNA chain elongation. Depletion of TIM (but not TIPIN) reduces replication fork progression rate in undamaged cells, indicating distinct roles for each subunit. |
siRNA knockdown, immunofluorescence of spread DNA fibers (DNA fiber assay), pulldown with RPA-coated DNA |
Molecular and cellular biology |
High |
17296725
|
| 2007 |
Xenopus Tipin is a substrate of cyclin E/CDK2, phosphorylated in interphase with further phosphorylation upon mitotic entry. Tipin/Tim1 complex is chromatin-bound during unperturbed replication and interacts with the MCM helicase. Depletion of Tipin from Xenopus egg extracts does not significantly impair normal replication but blocks stalled fork recovery after aphidicolin removal, and impairs Chk1 activation and Claspin loading onto chromatin. |
Xenopus egg extract depletion/reconstitution, in vitro kinase assay, chromatin fractionation, co-immunoprecipitation |
Proceedings of the National Academy of Sciences of the United States of America |
High |
17846426
|
| 2009 |
In Xenopus egg extracts, Tipin is required for DNA Pol alpha binding to chromatin and interacts with And1, a Pol alpha chromatin-loading factor. Tipin/Tim1/And1 form a complex that promotes stable Pol alpha chromatin binding, DNA replication under origin-limiting conditions, and establishment of sister chromatid cohesion. |
Xenopus egg extract depletion, co-immunoprecipitation, chromatin fractionation |
The EMBO journal |
High |
19893489
|
| 2009 |
Tim-Tipin depletion increases ssDNA accumulation at replication forks and stimulates ATR activity during unperturbed DNA replication. Suppression of ATR-Chk1 in Tim-Tipin-deficient cells completely abrogates nucleotide incorporation in S phase, indicating ATR-dependent signaling is indispensable for continued DNA synthesis when Tim-Tipin is absent. The complex prevents ssDNA accumulation upstream of ATR-Chk1 function. |
siRNA knockdown, BrdU incorporation, immunofluorescence (ssDNA/γ-H2AX), genetic epistasis (ATR inhibition + Tim depletion) |
The Journal of cell biology |
High |
19805627
|
| 2010 |
The Timeless-Tipin complex mediates Chk1 phosphorylation by ATR specifically through Tipin's interaction with the 34 kDa subunit of RPA (RPA32). The Tipin-RPA interaction stabilizes Timeless-Tipin and Tipin-Claspin complexes on RPA-coated ssDNA, thereby promoting Claspin-mediated phosphorylation of Chk1 by ATR. |
siRNA knockdown, co-immunoprecipitation, in vitro binding assays with ssDNA-RPA |
The Journal of biological chemistry |
High |
20233725
|
| 2010 |
Timeless and TIPIN co-purify with cohesin subunits and are required for stable cohesin association with chromatin during S phase. Depletion of Timeless-Tipin impairs sister chromatid cohesion and causes mitotic progression defects. Timeless associates with ChlR1 (cohesion-promoting DNA helicase), and ChlR1 overexpression partially alleviates the cohesion defect caused by Timeless-Tipin depletion. |
Co-purification/co-immunoprecipitation, siRNA knockdown, chromatin fractionation, chromosome cohesion assay |
Journal of cell science |
High |
20124417
|
| 2010 |
TIPIN interacts with MCM3-7 proteins (but not MCM2) by co-immunoprecipitation in co-expressed insect cells, consistent with its role at the replication fork. |
Co-immunoprecipitation in insect cells |
Journal of biochemistry |
Low |
20299328
|
| 2010 |
The RPA32 C-terminal domain (RPA32C) binds TIPIN(185-218) through a binding interface similar to that used for XPA and UNG2, as characterized by NMR spectroscopy. TIPIN(185-218) is disordered in free state and forms an alpha-helix upon binding RPA32C, using a shared but distinct interaction mode. |
NMR spectroscopy, in silico modeling |
The international journal of biochemistry & cell biology |
Medium |
20417305
|
| 2011 |
siRNA-mediated knockdown of TIPIN in human diploid fibroblasts induces a ~4-20 fold increase in sister chromatid discohesion, whereas Timeless knockdown causes ~100-fold increase, indicating Timeless has a SCC function partly independent of the Tim-Tipin complex. Chk1 knockdown does not significantly affect SCC, placing SCC function of Tipin upstream of or independent of Chk1. |
siRNA knockdown, sister chromatid cohesion assay (cytogenetics), epistasis |
Cell cycle (Georgetown, Tex.) |
Medium |
21508667
|
| 2013 |
The reconstituted human Tim-Tipin complex directly interacts with Mcm2-7 and Mcm4/6/7 complexes and inhibits their ssDNA-dependent ATPase and DNA unwinding activities. It also inhibits ATPase and helicase activity of the CMG (Cdc45-Mcm2-7-GINS) complex. Tim-Tipin significantly stimulates the polymerase activities of DNA pols α, δ, and ε in vitro; the stimulatory effect on pols and inhibitory effect on MCMs are mediated by distinct regions of Tim protein alone. |
Baculovirus-reconstituted Tim-Tipin complex, in vitro ATPase assay, DNA unwinding assay, DNA polymerase activity assay, co-immunoprecipitation |
Proceedings of the National Academy of Sciences of the United States of America |
High |
23359676
|
| 2013 |
Recombinant human Tim-Tipin complex (and Tim alone) directly interacts with DNA polymerase ε by surface plasmon resonance and co-immunoprecipitation, and markedly stimulates Pol ε synthetic activity in vitro. No significant stimulation of Pol α or δ was observed by Tim-Tipin in this study (contrasting with findings in PMID:23359676). |
Surface plasmon resonance, co-immunoprecipitation, in vitro DNA synthesis assay |
The Journal of biological chemistry |
Medium |
23511638
|
| 2014 |
In Xenopus egg extracts, Tipin deficiency leads to accumulation of reversed replication fork intermediates. Mta2, a subunit of the NuRD chromatin remodeler complex, was identified as a novel Tipin binding partner; Mta2 is required for Tipin-dependent Pol α binding to replicating chromatin, and this function prevents reversed fork accumulation. Tipin is directly required for efficient replication of vertebrate centromeric DNA. |
Xenopus egg extract depletion, co-immunoprecipitation, electron microscopy (reversed fork detection), locus-specific replication assay |
Cell cycle (Georgetown, Tex.) |
Medium |
24830473
|
| 2014 |
In TIPIN knockout DT40 cells, replication fork collisions with CPT-trapped topoisomerase I lead to proteasome-dependent degradation of chromatin-bound Top1, and this is suppressed by aphidicolin pretreatment, indicating that replication forks lacking TIPIN collide at high rate with Top1-DNA adducts. Homologous recombination and replication checkpoint were activated normally in TIPIN KO cells upon CPT treatment. |
Gene knockout (TIPIN KO DT40 cells), DNA synthesis assay, proteasome inhibitor treatment, aphidicolin epistasis |
The Journal of biological chemistry |
Medium |
24573676
|
| 2014 |
Cryo-EM structure of the Tim-Tipin-RPA complex reveals a globular 258 kDa heterotrimeric assembly (1:1:1 stoichiometry) with a ring-like and U-shaped domain architecture covered by an RPA lid. RPA in the complex adopts a horseshoe-like conformation resembling its 30-nt ssDNA binding mode. Recruitment of the Tim-Tipin-RPA complex to ssDNA requires RPA to be in the compact 30-nt binding mode. |
Cryo-EM 3D reconstruction, biochemical complex reconstitution, analytical ultracentrifugation |
Nucleic acids research |
High |
25348395
|
| 2015 |
TIMELESS forms a physical complex with PARP1 that is distinct from the TIMELESS-TIPIN complex. TIMELESS recruitment to laser-induced DNA damage sites depends on PARP1 binding but not PARP1 catalytic activity. TIMELESS mutants unable to bind PARP1 fail to interact with PARP1 substrates, and TIMELESS knockdown impairs PARP1 substrate recruitment to damage sites and impairs DSB repair. |
Co-immunoprecipitation, laser micro-irradiation/immunofluorescence, TIMELESS mutant analysis, siRNA knockdown |
Cell reports |
Medium |
26456830
|
| 2017 |
Crystal structure of the N-terminal domain of human Timeless (residues 1-463) at 1.85 Å resolution reveals a partial binding site for Tipin within this domain. Minimal regions of both Timeless and Tipin required for stable heterodimer formation were defined, showing the Timeless-Tipin interaction is based on a composite binding interface comprising different domains of Timeless. |
X-ray crystallography, biochemical binding assays, cross-linking mass spectrometry |
Nucleic acids research |
High |
28334766
|
| 2020 |
Crystal structure of the yeast Tof1-Csm3 (Timeless-Tipin) ortholog complex at 3.1 Å reveals an extended alpha-helical repeat architecture suggesting a mechanical/scaffolding role. A DNA-interacting region and a cancer-associated Mrc1 (Claspin ortholog) binding site were characterized within the complex. |
X-ray crystallography, biochemical binding characterization |
Nucleic acids research |
High |
32469068
|
| 2020 |
SDE2 directly interacts with TIMELESS (TIM) and enhances its stability, thereby promoting TIM localization to replication forks and coordination of replisome progression. Loss of SDE2 or TIM results in excessive MRE11-dependent degradation of reversed replication forks, and SDE2 depletion leads to impaired fork progression, stalled fork recovery, and failure to activate CHK1 phosphorylation. |
Co-immunoprecipitation, siRNA knockdown, DNA fiber assay, chromatin fractionation, MRE11 epistasis |
Nature communications |
Medium |
33127907
|
| 2021 |
In Caenorhabditis elegans, the TIMELESS-TIPIN complex is required for CUL-2LRR-1 (ubiquitin ligase) recruitment and efficient ubiquitylation of MCM-7 subunit of CMG helicase during replication termination, facilitating replisome disassembly. UBXN-3 (human FAF1) directly stimulates disassembly of ubiquitylated CMG by CDC-48, and co-depletion of UBXN-3 and TIMELESS causes synthetic lethality. |
In vitro reconstitution, C. elegans in vivo depletion (RNAi), ubiquitylation assays, genetic epistasis (synthetic lethality) |
The EMBO journal |
High |
34269473
|
| 2024 |
Using proximity ligation assay and colocalization microscopy in human cells, Timeless-Tipin complex remains chromatin-bound and progresses with the replicative helicase (not the blocked polymerase) upon replication stress induced by HU or aphidicolin, indicating spatial dissociation from blocked replication machinery. After stress induction, Timeless interaction with RPA (accumulating on ssDNA) is increased. |
Proximity ligation assay, colocalization microscopy, chromatin fractionation, replication stress induction |
Frontiers in cell and developmental biology |
Medium |
38487270
|
| 2025 |
TIPIN and BRCA1 show a synthetic lethal interaction: cells deficient for both accumulate chromosomal aberrations (breaks and radial chromosomes) and die. This synthetic lethality is rescued by depletion of 53BP1, indicating that TIPIN-deficient cells rely on BRCA1-mediated homologous recombination to repair spontaneous DNA lesions. Viability of TIPIN/53BP1/BRCA1 triple mutants is lost by RNF8 depletion, implicating an RNF8-mediated sub-HR pathway as a complementary repair route. |
Gene knockout (DT40 or similar), genetic epistasis (double/triple mutants), chromosomal aberration analysis |
Biochemical and biophysical research communications |
Medium |
39955949
|
| 2025 |
TIPIN amplifies ATM signaling in response to topoisomerase inhibitor-induced DSBs and promotes DNA end resection and homology-directed repair. TIPIN is phosphorylated by ATM, and this phosphorylation is required for MDC1 recruitment to stalled forks, which in turn promotes ATM-dependent NF-κB activation, upregulation of anti-apoptotic c-FLIP, and suppression of caspase-8 activation. |
siRNA knockdown, co-immunoprecipitation, phosphorylation assays, MDC1 depletion epistasis, NF-κB reporter assay, caspase activation assay |
Communications biology |
Medium |
41291151
|