| 1994 |
TIMELESS (TIM) is required for circadian rhythmicity in Drosophila; tim mutation abolishes both eclosion and locomotor activity rhythms and disrupts circadian oscillations of period (per) RNA, establishing TIM as a core clock component that regulates per expression. |
Genetic loss-of-function (tim mutant flies), behavioral assays, RNA analysis |
Science |
High |
8128246
|
| 1994 |
TIM is required for nuclear localization of the PERIOD (PER) protein; in tim mutant flies, PER is excluded from nuclei, and a PER domain containing the PAS region and flanking sequences is responsible for this cytoplasmic retention in the absence of TIM. |
Immunocytochemistry of PER in tim mutant and wild-type Drosophila brains; PER fusion protein localization |
Science |
High |
8128247
|
| 1995 |
TIM protein physically interacts with PER via a direct heterotypic protein-protein interaction; a restricted segment of TIM binds the PER PAS dimerization domain. The long-period PERL mutation causes a temperature-sensitive defect in TIM binding, correlating with delayed PER nuclear entry. |
Yeast two-hybrid screen (TIM cloned by PER interaction), in vitro binding assay, temperature-sensitive binding assay with PERL mutant |
Science |
High |
7481773
|
| 1995 |
tim RNA levels cycle with a circadian rhythm (same phase as per RNA), and these oscillations depend on feedback from PER and TIM proteins themselves, demonstrating autoregulatory feedback control of tim transcription. Cyclic TIM expression controls timing of PER protein accumulation and nuclear localization. |
Northern blot RNA quantification in wild-type and mutant Drosophila under LD and DD; genetic epistasis using per and tim mutants |
Science |
High |
7481772
|
| 1995 |
TIM protein positional cloning revealed it encodes a 1389 amino acid protein with no PAS domain, indicating that the PER-TIM interaction requires a heterotypic association. The arrhythmic tim01 allele results from a 64-bp deletion truncating TIM to 749 amino acids. |
Positional cloning, sequencing, deletion mapping |
Science |
High |
7481771
|
| 1995 |
In tim mutant flies, PER protein levels are constitutively low and do not cycle; TIM suppresses circadian cycling of PER protein abundance and PER phosphorylation, suggesting TIM has a primary posttranscriptional effect on PER expression. |
Western blot analysis of PER protein levels and phosphorylation state in tim mutants vs. wild-type |
The EMBO journal |
High |
7664743
|
| 1996 |
TIM protein levels oscillate with a circadian rhythm, peaking later than TIM RNA by several hours. Nuclear expression of TIM requires PER protein. Light rapidly reduces TIM (but not PER) protein levels posttranscriptionally, establishing TIM as the mediator of light-induced clock resetting. |
Immunostaining of TIM protein in adult Drosophila heads across circadian cycle; light-pulse experiments; per mutant analysis |
Cell |
High |
8625406
|
| 1996 |
TIM is rapidly degraded by light exposure, and TIM accumulates rhythmically in nuclei of eyes and pacemaker brain cells. Light-induced phase shifts in TIM protein levels correspond to behavioral phase shifts, coupling the molecular pacemaker to the environment. |
Immunostaining of TIM protein after light pulses at different times; behavioral phase-response curves |
Science |
High |
8596937
|
| 1996 |
PER and TIM accumulate in the cytoplasm when independently expressed in Drosophila S2 cells, but translocate to nuclei when coexpressed. Domains within each protein inhibit nuclear localization when monomeric; the sequence blocking PER nuclear accumulation forms a TIM-binding site. Cytoplasmic assembly of PER/TIM heterodimer is required for nuclear transport of either protein. |
Transfection of Drosophila S2 cells with PER and TIM expression constructs, immunofluorescence, domain-deletion mapping, in vitro protein interaction |
Neuron |
High |
8938123
|
| 1996 |
The timSL allele of timeless acts as an allele-specific suppressor of perL, restoring temperature compensation and altering the temporal pattern of PERL protein nuclear localization. timSL alters TIM phosphorylation during late night, providing evidence that TIM phosphorylation contributes to the circadian timekeeping mechanism. |
Genetic suppressor screen, behavioral rhythmicity assays, immunocytochemistry, yeast binding assay, Western blot phosphorylation analysis |
Neuron |
Medium |
8938124
|
| 1998 |
Human TIMELESS (hTIM) interacts with Drosophila PER and with mouse PER1 and PER2 in vitro. In Drosophila S2 cells, hTIM and dPER interact and translocate to the nucleus. hTIM and mPER1 specifically inhibit CLOCK-BMAL1-induced transactivation of the mPer1 promoter. |
In vitro binding assay, co-transfection + immunofluorescence in S2 cells, transcriptional reporter assay |
Neuron |
High |
9856465
|
| 1999 |
Drosophila CRYPTOCHROME (CRY) blocks PER/TIM complex function in a light-dependent manner by directly interacting with TIM. CRY and TIM are part of the same complex, interact in yeast in a light-dependent fashion, and light signals cause PER/TIM/CRY complexes to reside primarily in the nucleus. TIM degradation is uncoupled from abrogation of its function by CRY. |
Yeast two-hybrid interaction (light-dependent), co-immunoprecipitation, subcellular localization (immunofluorescence) |
Science |
High |
10417378
|
| 1999 |
TIM positively regulates per mRNA levels through a post-transcriptional mechanism, in addition to its role in negative feedback. Heat-shock induction of TIM in tim loss-of-function flies rapidly initiates a molecular cycle of PER accumulation, revealing both positive and negative autoregulatory roles for TIM. |
Heat-shock inducible transgene rescue in tim null background; RNA and protein analyses after TIM induction |
The EMBO journal |
Medium |
9927427
|
| 2000 |
In the absence of TIM (after light-induced TIM degradation), nuclear PER alone can function as a potent negative transcriptional repressor of dCLOCK/CYCLE-mediated per and tim transcription. Constitutively nuclear PER represses dCLOCK/CYCLE transcription without TIM in cultured cells. |
Light-induced TIM elimination from nuclear PER/TIMUL complexes; constitutively nuclear PER transgene behavioral analysis; cell-based transcription repression assay |
Neuron |
Medium |
10839368
|
| 2002 |
The F-box/WD40 protein SLIMB, a component of the SCF ubiquitin ligase complex, is required for circadian degradation of phosphorylated PER and TIM proteins. In slimb mutants, highly phosphorylated forms of PER and TIM accumulate constitutively, indicating SLIMB targets phosphorylated clock proteins for degradation. |
Genetic analysis of slimb mutants, behavioral rhythmicity assays, Western blot of PER and TIM protein levels and phosphorylation |
Nature |
High |
12432393
|
| 2003 |
In Drosophila ovarian follicle cells, PER and TIM are constitutively expressed, interact, but do not translocate to the nucleus. Their levels are unaffected by light or by loss of CLK/CYC, indicating a non-circadian mode of PER/TIM regulation in the ovary that is distinct from clock cells. |
Immunostaining in Drosophila ovaries, genetic analysis with clk, cyc, and light treatment; fertility phenotype in per and tim null mutants |
Journal of biological rhythms |
Medium |
14667147
|
| 2003 |
Mammalian mTIM is essential for embryonic development (mouse knockout is lethal), and full-length mTIM protein oscillates with a 24-hour rhythm in the SCN and associates with mammalian PER proteins (mPERs) in SCN cells. Conditional knockdown of mTIM in rat SCN disrupts neuronal activity rhythms and alters levels of core clock elements. |
Conditional antisense knockdown in rat SCN, bioluminescence/electrophysiology recordings, co-immunoprecipitation from SCN extracts, Western blot of mTIM isoforms |
Science |
Medium |
14564007
|
| 2003 |
TIPIN (Timeless-interacting protein) was identified as a novel mTIM-binding partner via yeast two-hybrid. TIPIN interacts with mTIM in vitro and in cultured cells, disrupts mTIM homo-multimer formation, and mTIM promotes nuclear localization of TIPIN. |
Yeast two-hybrid screen, in vitro binding, co-immunoprecipitation in transfected cells, immunofluorescence |
Journal of molecular biology |
Medium |
12875843
|
| 2003 |
Drosophila TIM shuttles independently between nucleus and cytoplasm in vivo and in vitro. PER is not required for TIM nuclear entry but influences TIM localization; blocking nuclear export increases nuclear TIM. Nuclear TIM alone does not repress CLK/CYC-driven transcription; PER may be required for nuclear retention of TIM. |
Immunostaining in per mutant and wild-type larvae and S2 cells; nuclear export inhibition; transcriptional reporter assay |
The Journal of neuroscience |
Medium |
12944510
|
| 2005 |
Human TIMELESS interacts with the circadian clock protein cryptochrome 2 (CRY2) and with cell cycle checkpoint proteins CHK1 and the ATR-ATRIP complex. Knockdown of TIMELESS in human cells severely compromises replication and intra-S checkpoints, demonstrating a role in DNA damage checkpoint responses. |
Co-immunoprecipitation, siRNA knockdown in human cells, DNA damage checkpoint assays (replication checkpoint, intra-S checkpoint) |
Molecular and cellular biology |
High |
15798197
|
| 2006 |
TIPIN and TIMELESS form a mutually protective complex; loss of either protein leads to loss of the partner. TIPIN is a nuclear protein associated with the replicative helicase, required for efficient cell cycle arrest in response to DNA damage. TIPIN depletion renders cells sensitive to ionizing radiation and replication stress and causes spontaneous γ-H2AX foci. |
Co-immunoprecipitation, siRNA knockdown, flow cytometry, γ-H2AX immunofluorescence, clonogenic survival |
Proceedings of the National Academy of Sciences of the United States of America |
High |
17116885
|
| 2006 |
Human TIMELESS and TIPIN are replisome-associated proteins that co-localize with BrdU-positive DNA replication sites. TIM-TIPIN directly binds the 34 kDa subunit of replication protein A (RPA34). TIM knockdown compromises DNA replication efficiency. TIPIN also associates with peroxiredoxin 2. |
Co-immunoprecipitation with replisome components, co-localization with BrdU replication foci, surface plasmon resonance (direct binding to RPA34), siRNA knockdown + DNA replication assay |
Journal of molecular biology |
High |
17141802
|
| 2006 |
Human TIPIN interacts with TIM through N-terminal segments of each molecule. The TIM-TIPIN complex is present throughout the cell cycle in the nucleus with fractions in chromatin during S phase. TIPIN depletion causes radioresistant DNA synthesis, inhibits CHK1 phosphorylation under replication stress, and reduces nuclear accumulation of Claspin. TIPIN and TIM mutually stabilize each other. |
Co-immunoprecipitation, domain-mapping, chromatin fractionation, siRNA knockdown, CHK1 phosphorylation assay, Claspin localization |
The Journal of biological chemistry |
High |
17102137
|
| 2008 |
CK2 kinase phosphorylates TIM in vitro and in vivo. Dominant-negative CK2α increases TIM protein levels, causes persistent cytoplasmic TIM localization, reduces oscillation amplitude, and elevates tim transcript. TIM is required for CK2 effects on PER; deletion of a conserved serine-rich domain of TIM abolishes rhythmic phosphorylation-associated mobility shifts. A putative CK2 site in TIMUL reduces period-lengthening effects of dominant-negative CK2. |
In vitro kinase assay (CK2 phosphorylation of TIM), dominant-negative transgene expression in Drosophila, Western blot, immunocytochemistry, genetic epistasis (tim01, per01 backgrounds) |
The Journal of neuroscience |
High |
18815259
|
| 2009 |
Mammalian TIMELESS is required for ATM-dependent CHK2 activation and G2/M checkpoint control. TIM depletion attenuates doxorubicin-induced G2/M arrest and sensitizes cancer cells to doxorubicin-induced cytotoxicity. |
siRNA knockdown of TIM in human cancer cells, Western blot for CHK2 phosphorylation, flow cytometry for cell cycle, viability assays |
The Journal of biological chemistry |
Medium |
19996108
|
| 2010 |
Human TIMELESS is recruited to replication origin regions and dissociates as replication proceeds. Timeless-Tipin depletion causes chromosome fragmentation, impairs sister chromatid cohesion, and causes mitotic defects. Timeless co-purifies with cohesin subunits and is required for their stable chromatin association during S phase. Timeless associates with the cohesion-promoting helicase ChlR1; ChlR1 overexpression partially rescues the cohesion defect. |
ChIP at replication origins, siRNA knockdown, chromosome fragmentation analysis, sister chromatid cohesion assays, co-immunoprecipitation with cohesin and ChlR1 |
Journal of cell science |
High |
20124417
|
| 2011 |
Timeless is essential for EBV episomal maintenance; Tim and Tipin accumulate at the EBV OriP during S phase, and Tim depletion inhibits OriP-dependent DNA replication and causes complete loss of closed-circular EBV episomes in latently infected B cells, with accumulation of double-strand breaks at OriP. |
ChIP at OriP, siRNA knockdown of Tim, Southern blot for EBV episome forms, γ-H2AX analysis |
Journal of virology |
Medium |
21490103
|
| 2011 |
In human fibroblasts, Timeless has a function in sister chromatid cohesion (SCC) independent of the Tim-Tipin complex and independent of Chk1. Timeless knockdown induces a ~100-fold increase in sister chromatid discohesion, while Tipin knockdown causes only 4–20-fold, indicating a Tipin-independent role for Timeless in SCC. |
siRNA knockdown of Timeless, Tipin, Claspin, Chk1, ATR; SCC assay; comparison of discohesion levels |
Cell cycle |
Medium |
21508667
|
| 2012 |
Drosophila TIM regulates circadian resistance to bacterial infection by controlling phagocytic activity. Wild-type flies exhibit upregulated phagocytic activity at night; tim mutants lose this night-time peak. TIM appears to regulate an upstream event in phagocytosis such as bacterial recognition or activation of phagocytic hemocytes. |
tim mutant survival analysis, phagocytosis assays, AMP expression analysis, melanization assays in wild-type vs. tim mutant flies |
PLoS pathogens |
Medium |
22253593
|
| 2012 |
CULLIN-3 (CUL-3) is required for circadian control of TIM oscillations. CUL-3 forms protein complexes with hypo-phosphorylated TIM (whereas SLMB preferentially targets phosphorylated TIM). CUL-3 and SLMB act additively and via different mechanisms on TIM and PER degradation. |
RNAi/dominant-negative of CUL-3 in Drosophila clock neurons, behavioral assays, Western blot for TIM/PER levels and phosphorylation, co-immunoprecipitation of CUL-3 with TIM |
PLoS biology |
High |
22879814
|
| 2012 |
Timeless depletion leads to telomere shortening in human cells independently of telomerase. Timeless associates with Shelterin components TRF1 and TRF2, and TRF1 mediates accumulation of replisome components at telomeres. Timeless depletion slows telomere replication in vitro and causes telomere replication delay and DNA damage. |
siRNA knockdown, telomere length assays (Q-FISH, Southern blot), co-immunoprecipitation with TRF1/TRF2, in vitro telomere replication assay, immunofluorescence |
Cell cycle |
Medium |
22672906
|
| 2013 |
Timeless is required for KSHV episome maintenance; Tim and Tipin are enriched at KSHV terminal repeats (TR) during S phase in a LANA-dependent manner. Tim depletion inhibits LANA-dependent TR DNA replication and causes loss of KSHV episomes with aberrant accumulation of recombination structures and arrested MCM helicase at TR. |
ChIP at KSHV TR, siRNA knockdown of Tim, 2D agarose gel analysis of replication intermediates, KSHV episome detection |
Journal of virology |
Medium |
23325691
|
| 2013 |
Mammalian TIMELESS is involved in circadian period determination; RNAi knockdown in NIH3T3 and U2OS cells shortens the period by ~1 hour. The N-terminus of TIM is sufficient for interaction with CRY1 and CHK1, and for homodimerization; the C-terminus is necessary for nuclear localization. The long TIM isoform (l-TIM) but not the short (s-TIM) interacts with CRY1; l-TIM and CRY1 can reciprocally regulate each other's nuclear translocation. PER2 abolishes TIM/CRY1 complex formation through competition for the C-terminal tail of CRY1. |
RNAi in oscillating cell lines (period measurement), co-immunoprecipitation, domain-deletion mapping, nuclear translocation assay in COS7 cells |
PloS one |
Medium |
23418588
|
| 2015 |
Human TIMELESS physically interacts with PARP-1 via a specific PARP-1-binding domain (PAB) that recognizes PARP-1 but not PARP-2 or PARP-3, independent of poly(ADP-ribosyl)ation. Crystal structures of the Timeless PAB domain alone and in complex with the PARP-1 catalytic domain were solved. Timeless recruitment to laser-induced DNA damage requires PARP-1 but not PAR. PARP-1-TIMELESS interaction is required for efficient homologous recombination repair. |
Co-immunoprecipitation, crystal structure (X-ray crystallography), laser-microirradiation + live imaging, HR repair assay, PARP-1 enzymatic activity assay |
Molecular cell |
High |
26344098
|
| 2015 |
TIMELESS forms a complex with PARP-1 that is distinct from the TIMELESS-TIPIN complex. TIMELESS recruitment to DNA damage sites is PARP-1-dependent but PAR-independent. TIMELESS knockdown impairs PARP-1 binding to certain substrates, their recruitment to DNA damage lesions, and DNA double-strand break repair. |
Co-immunoprecipitation, laser-induced DNA damage + immunofluorescence, siRNA knockdown, DSB repair assay |
Cell reports |
Medium |
26456830
|
| 2015 |
Tim physically and functionally interacts with DDX11 helicase; Tim stimulates DDX11 unwinding activity on forked DNA substrates up to 10-fold, on G-quadruplex DNA ~4–5-fold, and on D-loop ~4–5-fold. Tim enhances DDX11 binding to DNA substrates. Tim and DDX11 are epistatic for replication fork progression and recovery from stalled forks in HeLa cells. |
In vitro helicase assay, electrophoretic mobility shift assay, surface plasmon resonance (direct binding), DNA fiber track assay, siRNA co-depletion epistasis |
Nucleic acids research |
High |
26503245
|
| 2016 |
GSK-3/SGG binds and phosphorylates PER-bound TIM in Drosophila master pacemaker neurons, triggering a subsequent CK2-mediated phosphorylation cascade that controls the timing of nuclear accumulation of the PER/TIM repressor complex. Mutations blocking this hierarchical phosphorylation delay nuclear accumulation and alter circadian behavior. This two-kinase cascade is restricted to the eight master pacemaker neurons. |
In vitro kinase assay (GSK-3 phosphorylation of TIM), genetic mutations blocking phosphorylation sites, tissue culture nuclear accumulation assay, immunocytochemistry in vivo, behavioral period analysis |
Cell reports |
High |
27346344
|
| 2018 |
Ubiquitylation of TIM in Drosophila is mediated cooperatively by both CULLIN-3 and SLMB ubiquitin ligase subunits, which collaborate to ubiquitylate TIMELESS protein during the circadian cycle. |
In vivo ubiquitin labeling assay, co-immunoprecipitation, mass spectrometry, genetic analysis |
Cell reports |
Medium |
29791839
|
| 2018 |
PRP4 kinase (a U4/U5.U6 tri-snRNP spliceosome component) and other tri-snRNP components regulate the Drosophila circadian clock by controlling alternative splicing of timeless (tim) pre-mRNA. Increased intron retention in tim upon prp4 downregulation decreases TIM levels. Tim splicing is rhythmic with a phase that parallels delayed TIM protein accumulation. |
RNAi screen, RNA-seq, RT-PCR splicing analysis, behavioral rhythmicity assay, protein level analysis |
eLife |
Medium |
30516472
|
| 2019 |
Claspin and Timeless overexpression protects cancer cells from replication stress (RS) by protecting replication forks in a checkpoint-independent manner. Reducing Claspin and Timeless to pre-tumoral levels impedes fork progression without affecting checkpoint signaling. Primary fibroblasts adapt to oncogene-induced RS by spontaneously overexpressing Claspin and Timeless independently of ATR signaling. |
siRNA knockdown to pre-tumoral levels, DNA fiber assay (fork progression), checkpoint signaling Western blot, oncogene-induced RS model in fibroblasts |
Nature communications |
Medium |
30796221
|
| 2019 |
A human TIMELESS mutation causes familial advanced sleep phase (FASP). The mutation prevents TIM nuclear accumulation and reduces TIM affinity for CRY2, leading to destabilization of the PER/CRY complex and shorter circadian period in mouse embryonic fibroblasts. CRISPR mutant mice exhibit FASP with altered photic entrainment. |
Human genetics (FASP family), CRISPR mutant mice (behavioral analysis), nuclear localization assay, co-immunoprecipitation (TIM-CRY2 interaction), period measurement in MEFs |
Proceedings of the National Academy of Sciences of the United States of America |
High |
31138685
|
| 2020 |
TIMELESS harbors a C-terminal DNA-binding domain with specific affinity for G-quadruplex (G4) DNA structures. This domain contributes to maintaining processive replication through G4-forming sequences and exhibits partial redundancy with the adjacent PARP-binding domain. TIMELESS function at G4 structures requires interaction with and helicase activity of DDX11; loss of both causes epigenetic instability and DNA damage at G4-forming sequences. |
Biochemical DNA-binding assay (EMSA with G4 DNA), domain deletion/mutagenesis, DNA fiber assay, epistasis analysis with DDX11, epigenetic instability assay |
The EMBO journal |
High |
32705708
|
| 2020 |
SDE2 directly interacts with TIMELESS and enhances its stability, aiding TIM localization to replication forks. SDE2 depletion, like TIM depletion, impairs fork progression, stalled fork recovery, and CHK1 phosphorylation activation. Both TIM and SDE2 protect stalled forks from excessive MRE11-dependent degradation of reversed forks. |
Co-immunoprecipitation, siRNA knockdown, DNA fiber assay, CHK1 phosphorylation assay, reversed fork degradation assay (PLA/fiber) |
Nature communications |
Medium |
33127907
|
| 2020 |
In Drosophila, EYES ABSENT (EYA) acts as a seasonal sensor aided by the stabilizing action of TIMELESS. Increased TIM stability at night under short photoperiod and production of cold-induced, light-insensitive TIM isoforms facilitate EYA accumulation in winter conditions. tim null mutants exhibit reduced reproductive dormancy in simulated winter conditions. |
Tissue-specific genetic manipulation of eya and tim, reproductive dormancy phenotype assays, protein stability analysis |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
32541062
|
| 2021 |
The TIMELESS-TIPIN complex is required for CUL-2LRR-1 recruitment and efficient CMG helicase ubiquitylation during DNA replication termination in C. elegans. Aided by TIMELESS-TIPIN, CUL-2LRR-1 directs ubiquitylation enzymes to ubiquitylate MCM-7 subunit of CMG, facilitating replisome disassembly by CDC-48. Co-depletion of UBXN-3 (human FAF1 ortholog) and TIMELESS causes profound synthetic lethality. |
In vitro reconstitution of CMG ubiquitylation, in vivo C. elegans genetics, epistasis analysis, co-depletion lethality assay |
The EMBO journal |
High |
34269473
|
| 2023 |
Cryo-EM structure of the Drosophila CRY-TIM complex reveals that CRY engages a continuous core of N-terminal TIM armadillo repeats (resembling photolyase-DNA recognition) and binds a C-terminal TIM helix. The Cry flavin cofactor undergoes conformational changes coupled to large-scale rearrangements at the CRY-TIM interface. A phosphorylated segment of TIM may regulate Importin-α binding and TIM-PER nuclear import. The N-terminus of TIM inserts into the restructured CRY pocket to replace the autoinhibitory CRY C-terminal tail released by light, explaining how the long-short TIM polymorphism affects light sensitivity. |
Cryo-electron microscopy (cryo-EM) structure determination, structural analysis of CRY-TIM interface |
Nature |
High |
37100907
|