Affinage

TBCA

Tubulin-specific chaperone A · UniProt O75347

Length
108 aa
Mass
12.9 kDa
Annotated
2026-06-10
68 papers in source corpus 9 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TBCA is a small tubulin-specific chaperone (cofactor A) that operates within the post-chaperonin pathway controlling the supply and stability of β-tubulin for heterodimer assembly (PMID:23973072). Acting directly downstream of the cytosolic chaperonin CCT, TBCA binds and stabilizes newly generated quasi-native β-tubulin and exchanges it freely with TBCD, placing TBCA upstream of TBCD in the heterodimer assembly pathway (PMID:23973072). In a recycling arm, TBCA captures free β-tubulin released during TBCE-mediated dissociation of pre-existing tubulin heterodimers, forming a stable 1:1 TBCA–β-tubulin complex while TBCE, TBCB, and α-tubulin form a separate ternary complex (PMID:16624573, PMID:17184771); colchicine blocks this supply by inhibiting TBCE/TBCB-mediated dissociation, and titration of TBCA levels lowers heterodimer levels, indicating that TBCA chiefly captures β-tubulin from heterodimer recycling rather than from newly synthesized tubulin (PMID:33968934). Consistent with this central role in tubulin homeostasis, loss of TBCA depletes soluble tubulin, disrupts the microtubule cytoskeleton, and arrests the cell cycle, leading to compromised proliferation and viability (PMID:15963512, PMID:23740643). In vivo, TBCA is required for the development of a sexually dimorphic axonal projection circuit in the avian brain (PMID:25702708).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2005 High

    Established that TBCA is functionally essential in cells rather than a dispensable cofactor, by showing its loss collapses the tubulin pool and halts the cell cycle.

    Evidence siRNA knockdown in HeLa and MCF-7 cells with tubulin immunofluorescence, flow cytometry, and Western blot

    PMID:15963512

    Open questions at the time
    • Does not resolve whether the defect is in tubulin folding, capture, or recycling
    • G1 arrest mechanism downstream of tubulin loss not defined
  2. 2006 High

    Defined the biochemical product of TBCA action by showing it captures free β-tubulin released during heterodimer dissociation at a defined 1:1 stoichiometry.

    Evidence In vitro reconstitution with purified TBCE and tubulin, non-denaturing PAGE, antibody detection of TBCA–β-tubulin complex

    PMID:16624573

    Open questions at the time
    • Did not establish the structural basis of the TBCA–β-tubulin interface
    • Fate of captured β-tubulin (recycling vs degradation) not resolved
  3. 2006 High

    Placed TBCA within the cofactor network by showing that, complementary to TBCA capturing β-tubulin, TBCE/TBCB/α-tubulin form a post-dissociation ternary complex.

    Evidence Overexpression and reciprocal co-immunoprecipitation in mammalian cells plus in vitro dissociation assays

    PMID:17184771

    Open questions at the time
    • Whether α-tubulin is routed to degradation or recycling not determined
    • Kinetics of partner exchange not measured
  4. 2013 High

    Positioned TBCA in the assembly pathway by showing it stabilizes CCT-generated quasi-native β-tubulin and exchanges it with TBCD, defining TBCA as upstream of TBCD.

    Evidence In vitro CCT-driven folding reactions, co-immunoprecipitation, reconstitution with recombinant cofactors

    PMID:23973072

    Open questions at the time
    • Relative flux through synthesis vs recycling arms not quantified
    • Determinants directing β-tubulin from TBCA to TBCD unknown
  5. 2013 Medium

    Extended the cellular requirement for TBCA to cancer cells, linking its function to proliferation, motility, and cell cycle regulators.

    Evidence siRNA knockdown and overexpression in ccRCC cell lines with proliferation, apoptosis, invasion/migration assays and cyclin/CDK Western blots

    PMID:23740643

    Open questions at the time
    • Single-lab study
    • Whether cyclin A/E and CDK2 changes are direct or secondary to tubulin loss not established
  6. 2015 Medium

    Provided a structural model of TBCA and inferred that conserved electrostatic contacts, likely with the β-tubulin C-terminal tail, mediate the interaction.

    Evidence X-ray crystallography of Leishmania major TBCA with cross-species structural comparison

    PMID:25945706

    Open questions at the time
    • Proposed electrostatic interactions not experimentally validated
    • Ortholog structure, not human TBCA bound to β-tubulin
  7. 2015 Medium

    Demonstrated an in vivo developmental requirement for TBCA in building a sexually dimorphic neural circuit, beyond housekeeping tubulin maintenance.

    Evidence In vivo siRNA microinjection into zebra finch LMAN with anterograde tract tracing, immunohistochemistry, and cell counting

    PMID:25702708

    Open questions at the time
    • Whether circuit defect reflects loss of tubulin supply specifically not shown
    • Single-lab in vivo study
  8. 2021 High

    Resolved which arm dominates TBCA function in cells, showing it primarily captures β-tubulin from recycling of pre-existing heterodimers, with colchicine blocking the upstream dissociation step.

    Evidence Colchicine treatment of human cells, in vitro heterodimer dissociation assays, RNAi and overexpression, non-denaturing PAGE

    PMID:33968934

    Open questions at the time
    • Quantitative partition between synthesis and recycling arms in vivo not measured
    • Mechanism by which colchicine perturbs TBCE–tubulin interaction inferred, not directly visualized
  9. 2012 Medium

    Showed that TBCA levels are themselves regulated post-transcriptionally during spermatogenesis via a natural antisense RNA, indicating tissue-specific control of tubulin chaperone abundance.

    Evidence RNAi against Tbca16 sense/antisense transcripts in a mouse spermatocyte line with mass spectrometry, qRT-PCR, and in situ hybridization

    PMID:22880023

    Open questions at the time
    • Functional consequence of altered TBCA levels for spermatogenesis not tested
    • Antisense regulatory mechanism not defined at molecular detail

Open questions

Synthesis pass · forward-looking unresolved questions
  • How TBCA function is coordinated across distinct tissues and developmental contexts, and the structural basis of human TBCA–β-tubulin recognition, remain open.
  • Human TBCA–β-tubulin complex structure not solved
  • In vivo flux balance between synthesis and recycling arms unquantified
  • Tissue-specific roles (cardiac, neuronal) mechanistically uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0044183 protein folding chaperone 3 GO:0008092 cytoskeletal protein binding 2 GO:0140313 molecular sequestering activity 2
Localization
GO:0005829 cytosol 2 GO:0005856 cytoskeleton 2
Pathway
R-HSA-1640170 Cell Cycle 2 R-HSA-392499 Metabolism of proteins 1

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 siRNA-mediated silencing of TBCA in HeLa and MCF-7 cells decreases the amount of soluble tubulin, disrupts microtubule organization, and causes G1 cell cycle arrest, demonstrating that TBCA is essential for maintaining tubulin levels and cell viability. siRNA knockdown in mammalian cell lines with tubulin immunofluorescence, flow cytometry cell cycle analysis, and Western blot FEBS letters High 15963512
2006 TBCA captures free β-tubulin released during TBCE-mediated heterodimer dissociation with a 1:1 stoichiometry, forming a stable TBCA–β-tubulin complex; this was demonstrated by incubating purified TBCE with tubulin in the presence of TBCA and detecting TBCA–β-tubulin complexes by non-denaturing gel electrophoresis and specific antibodies. In vitro reconstitution with purified proteins, non-denaturing PAGE, Western blot with anti-β-tubulin and anti-TBCA antibodies Protein expression and purification High 16624573
2006 After TBCE-mediated dissociation of tubulin heterodimers, TBCE, TBCB, and α-tubulin form a ternary complex, while free β-tubulin is captured by TBCA; these post-dissociation complexes may escort α-tubulin toward degradation or recycling. Overexpression and co-immunoprecipitation in mammalian cells; in vitro dissociation assays Experimental cell research High 17184771
2013 TBCA functions as a tubulin-specific chaperone that binds and stabilizes newly synthesized quasi-native β-tubulin polypeptides following their generation via ATP-dependent interaction with the cytosolic chaperonin CCT; there is free exchange of β-tubulin between TBCA and TBCD, placing TBCA upstream of TBCD in the heterodimer assembly pathway. In vitro CCT-driven folding reactions, co-immunoprecipitation, reconstitution with recombinant TBCs Methods in cell biology High 23973072
2013 Knockdown of TBCA in ccRCC cells inhibits proliferation, promotes apoptosis, reduces invasion and migration, disrupts cytoskeletal integrity, induces S/G2 cell cycle arrest, and alters cyclin A/E and CDK2 expression, establishing TBCA as a positive regulator of cell cycle progression and cytoskeleton integrity in renal cancer cells. siRNA knockdown and plasmid overexpression in ccRCC cell lines; proliferation assays, flow cytometry, invasion/migration assays, Western blot International journal of cancer Medium 23740643
2015 The crystal structure of TBCA from Leishmania major was solved; structural comparison with three orthologous proteins indicates that conserved electrostatic interactions, likely involving the C-terminal tail of β-tubulin, are key to the TBCA–β-tubulin association during early stages of microtubule biogenesis. X-ray crystallography with functional inference from structural comparison Acta crystallographica. Section F, Structural biology communications Medium 25945706
2015 TBCA siRNA delivered to the LMAN of developing zebra finches reduced RA cell number, cell size, and volume, and decreased the axonal projection from LMAN to RA, demonstrating that TBCA is required for development of a sexually dimorphic neural projection circuit. In vivo siRNA microinjection into LMAN of zebra finches, anterograde tract tracing, immunohistochemistry, cell counting Journal of neuroendocrinology Medium 25702708
2021 Colchicine treatment of human cells causes dissociation of the TBCA/β-tubulin complex and accumulation of free TBCA; in vitro assays show colchicine inhibits TBCE/TBCB-mediated heterodimer dissociation, likely by interfering with TBCE–tubulin interactions, thereby blocking the supply of β-tubulin to TBCA. Manipulation of TBCA levels by RNAi or overexpression decreases tubulin heterodimer levels, indicating TBCA primarily captures β-tubulin from recycling of pre-existing heterodimers rather than from newly synthesized tubulin. Colchicine treatment of human cells, in vitro heterodimer dissociation assays, RNAi knockdown and overexpression in cells, non-denaturing PAGE, Western blot Frontiers in cell and developmental biology High 33968934
2012 In mouse testis, TBCA protein levels are post-transcriptionally regulated during spermatogenesis; specific RNAi-mediated depletion of Tbca16 sense and antisense transcripts in a mouse spermatocyte cell line increases Tbca13 mRNA levels, demonstrating that a natural antisense RNA from the Tbca16 locus regulates TBCA expression during testis maturation. RNAi in mouse spermatocyte cell line, tandem mass spectrometry, quantitative RT-PCR, in situ hybridization PloS one Medium 22880023
2021 TBCA is abundant in mouse heart insoluble protein extracts, suggesting a structural or cytoskeletal role in cardiac tissue. Western blot fractionation of mouse heart insoluble protein extracts Frontiers in cell and developmental biology Low 33968934

Source papers

Stage 0 corpus · 68 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2007 Tetrabromocinnamic acid (TBCA) and related compounds represent a new class of specific protein kinase CK2 inhibitors. Chembiochem : a European journal of chemical biology 117 17133643
2015 Dimethyl fumarate confers neuroprotection by casein kinase 2 phosphorylation of Nrf2 in murine intracerebral hemorrhage. Neurobiology of disease 69 26176793
2006 Role of cofactors B (TBCB) and E (TBCE) in tubulin heterodimer dissociation. Experimental cell research 63 17184771
2013 Tubulin-specific chaperones: components of a molecular machine that assembles the α/β heterodimer. Methods in cell biology 54 23973072
2013 Tubulin cofactor A functions as a novel positive regulator of ccRCC progression, invasion and metastasis. International journal of cancer 42 23740643
2010 Effect of TBCD and its regulatory interactor Arl2 on tubulin and microtubule integrity. Cytoskeleton (Hoboken, N.J.) 41 20740604
2008 A pachygyria-causing alpha-tubulin mutation results in inefficient cycling with CCT and a deficient interaction with TBCB. Molecular biology of the cell 41 18199681
2017 A Trimer Consisting of the Tubulin-specific Chaperone D (TBCD), Regulatory GTPase ARL2, and β-Tubulin Is Required for Maintaining the Microtubule Network. The Journal of biological chemistry 40 28126905
2013 Attenuation of β-amyloid-induced tauopathy via activation of CK2α/SIRT1: targeting for cilostazol. Journal of neuroscience research 40 24254769
2005 Tubulin cofactor A gene silencing in mammalian cells induces changes in microtubule cytoskeleton, cell cycle arrest and cell death. FEBS letters 40 15963512
2017 Identification of potential pathogenic genes associated with osteoporosis. Bone & joint research 38 29203636
2007 Transcriptome analysis of differentiating spermatogonia stimulated with kit ligand. Gene expression patterns : GEP 38 18036996
2011 Release of mitochondrial apoptogenic factors and cell death are mediated by CK2 and NADPH oxidase. Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 35 22146192
2024 Serum proteomics reveal APOE-ε4-dependent and APOE-ε4-independent protein signatures in Alzheimer's disease. Nature aging 33 39169269
2015 Acupuncture elicits neuroprotective effect by inhibiting NAPDH oxidase-mediated reactive oxygen species production in cerebral ischaemia. Scientific reports 33 26656460
2019 Genome-wide DNA methylation analysis in ankylosing spondylitis identifies HLA-B*27 dependent and independent DNA methylation changes in whole blood. Journal of autoimmunity 30 31128893
2016 Infantile neurodegenerative disorder associated with mutations in TBCD, an essential gene in the tubulin heterodimer assembly pathway. Human molecular genetics 30 28158450
2013 Globular adiponectin elicits neuroprotection by inhibiting NADPH oxidase-mediated oxidative damage in ischemic stroke. Neuroscience 30 23756185
2016 Hierridin B Isolated from a Marine Cyanobacterium Alters VDAC1, Mitochondrial Activity, and Cell Cycle Genes on HT-29 Colon Adenocarcinoma Cells. Marine drugs 29 27589771
2018 Overexpression of adiponectin alleviates intracerebral hemorrhage-induced brain injury in rats via suppression of oxidative stress. Neuroscience letters 28 29870775
2014 Protein kinase CK2 inhibition induces cell death via early impact on mitochondrial function. Journal of cellular biochemistry 28 25043911
2010 Treatment of cultured human astrocytes and vascular endothelial cells with protein kinase CK2 inhibitors induces early changes in cell shape and cytoskeleton. Molecular and cellular biochemistry 27 21125314
2018 Proteomic alterations of fibroblasts induced by ovarian cancer cells reveal potential cancer targets. Neoplasma 26 28857608
2016 Comparative transcriptome analysis between an evolved abscisic acid-overproducing mutant Botrytis cinerea TBC-A and its ancestral strain Botrytis cinerea TBC-6. Scientific reports 26 27892476
2000 Differences in skeletal and muscle mass with aging in black and white women. American journal of physiology. Endocrinology and metabolism 25 10827019
2012 The expression of tubulin cofactor A (TBCA) is regulated by a noncoding antisense Tbca RNA during testis maturation. PloS one 22 22880023
2006 Cryptic out-of-frame translational initiation of TBCE rescues tubulin formation in compound heterozygous HRD. Proceedings of the National Academy of Sciences of the United States of America 22 16938882
2021 Colchicine Blocks Tubulin Heterodimer Recycling by Tubulin Cofactors TBCA, TBCB, and TBCE. Frontiers in cell and developmental biology 20 33968934
2012 Casein kinase 2 inhibition attenuates androgen receptor function and cell proliferation in prostate cancer cells. The Prostate 20 22290244
1996 Aging in women--the four-compartment model of body composition. Metabolism: clinical and experimental 19 8544776
2015 Abnormal Localization and Tumor Suppressor Function of Epithelial Tissue-Specific Transcription Factor ESE3 in Esophageal Squamous Cell Carcinoma. PloS one 18 25950810
2017 Nucleotide Binding to ARL2 in the TBCD∙ARL2∙β-Tubulin Complex Drives Conformational Changes in β-Tubulin. Journal of molecular biology 17 28970104
2006 Native tubulin-folding cofactor E purified from baculovirus-infected Sf9 cells dissociates tubulin dimers. Protein expression and purification 17 16624573
2022 Polygenic Resilience Modulates the Penetrance of Parkinson Disease Genetic Risk Factors. Annals of neurology 16 35599344
2015 The tubulin cofactor A is involved in hyphal growth, conidiation and cold sensitivity in Fusarium asiaticum. BMC microbiology 15 25886735
2012 Protection by cilostazol against amyloid-β(1-40)-induced suppression of viability and neurite elongation through activation of CK2α in HT22 mouse hippocampal cells. Journal of neuroscience research 15 22422579
2021 Limitations in the comparison of the Brazilian National Dietary Surveys of 2008-2009 and 2017-2018. Revista de saude publica 14 34910053
2013 Evaluation of CK2 inhibitor (E)-3-(2,3,4,5-tetrabromophenyl)acrylic acid (TBCA) in regulation of platelet function. European journal of pharmacology 14 24140231
1993 In vivo animal models of body composition in aging. The Journal of nutrition 14 8429404
2013 M9, a novel region of amino-Nogo-A, attenuates cerebral ischemic injury by inhibiting NADPH oxidase-derived superoxide production in mice. CNS neuroscience & therapeutics 12 23490284
2018 Cys2His2 Zinc Finger Transcription Factor BcabaR1 Positively Regulates Abscisic Acid Production in Botrytis cinerea. Applied and environmental microbiology 11 29959241
2013 A novel domain of amino-Nogo-A protects HT22 cells exposed to oxygen glucose deprivation by inhibiting NADPH oxidase activity. Cellular and molecular neurobiology 11 23354671
2022 Interactions between nuclear and mitochondrial SNPs and Parkinson's disease risk. Mitochondrion 9 35167983
2019 Multitarget-directed cotreatment with cilostazol and aripiprazole for augmented neuroprotection against oxidative stress-induced toxicity in HT22 mouse hippocampal cells. European journal of pharmacology 9 31202803
2017 Neuroprotection by aripiprazole against β-amyloid-induced toxicity by P-CK2α activation via inhibition of GSK-3β. Oncotarget 9 29299155
2022 Mutation-related magnetization-transfer, not axon density, drives white matter differences in premanifest Huntington disease: Evidence from in vivo ultra-strong gradient MRI. Human brain mapping 8 35396899
2012 Novel fluorescent cephalosporins: synthesis, antimicrobial activity and photodynamic inactivation of antibiotic resistant bacteria. European journal of medicinal chemistry 8 23220643
2009 Translation termination and protein folding pathway genes are not correlated in gastric cancer. Clinical chemistry and laboratory medicine 8 19284299
2016 Protein Kinase CK2 Regulates Leukocyte-Endothelial Cell Interactions during Ischemia and Reperfusion in Striated Skin Muscle. European surgical research. Europaische chirurgische Forschung. Recherches chirurgicales europeennes 7 27287005
2022 Genome- and epigenome-wide studies of plasma protein biomarkers for Alzheimer's disease implicate TBCA and TREM2 in disease risk. Alzheimer's & dementia (Amsterdam, Netherlands) 6 35475137
2017 New insights on thyroid hormone mediated regulation of herpesvirus infections. Cell & bioscience 6 28344765
2022 Label-free quantitative proteomics and immunoblotting identifies immunoreactive and other excretory-secretory (E/S) proteins of Anoplocephala perfoliata. Frontiers in immunology 5 36466892
2015 Masculinisation of the zebra finch song system: roles of oestradiol and the Z-chromosome gene tubulin-specific chaperone protein A. Journal of neuroendocrinology 5 25702708
2011 Cationic recognition by tert-butylcalix[4]arene-functionalized nanoprobes. Physical chemistry chemical physics : PCCP 5 21327207
2024 TBCA: Prediction of transcription factor binding sites using a deep neural network with lightweight attention mechanism. IEEE journal of biomedical and health informatics 4 38236675
2020 Adiponectin alleviates non-alcoholic fatty liver injury via regulating oxidative stress in liver cells. Minerva medica 4 32996726
2013 Sexually dimorphic and developmentally regulated expression of tubulin-specific chaperone protein A in the LMAN of zebra finches. Neuroscience 4 23727504
2023 Serum proteomics reveals APOE dependent and independent protein signatures in Alzheimer's disease. medRxiv : the preprint server for health sciences 3 37986771
2015 The structure of tubulin-binding cofactor A from Leishmania major infers a mode of association during the early stages of microtubule assembly. Acta crystallographica. Section F, Structural biology communications 3 25945706
2025 Phenotypic variability in progressive encephalopathy with brain atrophy and thin corpus callosum: insights from two families. Neurogenetics 2 39853547
2024 Serum proteomics reveals APOE dependent and independent protein signatures in Alzheimer's disease. Research square 2 38260284
2025 Proteomic signatures of the APOE ε4 and APOE ε2 genetic variants and Alzheimer's disease. medRxiv : the preprint server for health sciences 1 40799961
2025 Identifying space-resolved proteins of the murine thymus, by combining MALDI-MSI and proteomics. Life science alliance 1 41266110
2023 Control of aflatoxin biosynthesis by sulfur containing benzimidazole derivatives: In-silico interaction, biological activity, and gene regulation of Aspergillus flavus. Journal of biotechnology 1 37748651
2013 Scatter: a novel family of miniature inverted-repeat transposable elements in the fungus Botrytis cinerea. Journal of basic microbiology 1 23775675
2026 Senescence protein signatures predict dementia risk with causal implication for TBCA: a two-cohort study. Research square 0 41928789
2025 Identifying Space-Resolved Proteins of the Murine Thymus, by Combining MALDI Mass Spectrometry Imaging and Proteomics. bioRxiv : the preprint server for biology 0 40502118
2025 Comparative proteome analysis of dried blood spots for high-risk group screening in children with autism spectrum disorder. Progress in neuro-psychopharmacology & biological psychiatry 0 40953633

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