Affinage

STX10

Syntaxin-10 · UniProt O60499

Round 2 corrected
Length
249 aa
Mass
28.1 kDa
Annotated
2026-04-28
54 papers in source corpus 6 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

STX10 is a trans-Golgi network (TGN)-localized SNARE protein that participates in retrograde membrane trafficking between endosomes and the TGN. It forms a quaternary SNARE complex with STX16, Vti1a, and VAMP3 that operates downstream of Rab9 and the tether GCC185 to mediate mannose 6-phosphate receptor (MPR) retrieval from late endosomes to the TGN; depletion of STX10 causes MPR missorting and hypersecretion of lysosomal enzymes, defining a transport route distinct from the STX6-dependent pathway used for TGN46 and cholera toxin (PMID:18195106). STX10 interacts with the GARP tethering complex via hVps52, linking vesicle docking to SNARE-mediated fusion at the TGN (PMID:15878329), and also co-immunoprecipitates endosomal syntaxin 12/13; its knockdown alters transferrin receptor surface expression, indicating an additional role at the TGN–endosome boundary (PMID:16154903).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 1998 Medium

    Cloning of STX10 established it as a new syntaxin-family SNARE localized to intracellular membranes overlapping with TGN markers, placing it in the Golgi/TGN trafficking machinery.

    Evidence Molecular cloning, indirect immunofluorescence co-localization with GS28, brefeldin A sensitivity in human cells

    PMID:9446797

    Open questions at the time
    • No functional assay was performed; localization was inferred from a single Golgi marker and pharmacological perturbation
    • Binding partners and SNARE complex composition unknown
  2. 2005 Medium

    Identification of the GARP tethering complex (hVps52/53/54) as a STX10 interactor via hVps52 connected vesicle tethering to SNARE-mediated fusion at the TGN, and simultaneous functional studies showed STX10 is dispensable for shiga toxin retrograde transport but influences transferrin receptor surface levels through interaction with syntaxin 12/13.

    Evidence Co-immunoprecipitation of GARP–STX10; siRNA knockdown with shiga toxin transport and transferrin receptor assays; co-IP of STX10 with syntaxin 12/13

    PMID:15878329 PMID:16154903

    Open questions at the time
    • The specific cargo pathway requiring STX10 was not yet defined
    • SNARE complex partners beyond STX6/STX16 interaction were unresolved
    • Mechanism linking STX10 knockdown to altered transferrin receptor dynamics was not elucidated
  3. 2008 High

    Defining the STX10/STX16/Vti1a/VAMP3 quaternary SNARE complex and its requirement for Rab9-dependent MPR retrieval from late endosomes to the TGN resolved which cargo route STX10 operates in and distinguished it from the STX6-dependent early-endosome pathway.

    Evidence siRNA depletion of individual SNAREs, co-immunoprecipitation of the quaternary complex, hexosaminidase secretion and MPR localization assays, cholera toxin/TGN46 transport controls in human cells

    PMID:18195106

    Open questions at the time
    • Structural basis for complex assembly and selectivity over the STX6-containing complex is unknown
    • Mouse and rat cells lack STX10; the compensating SNARE in these species has not been identified
    • Whether the STX10-dependent pathway contributes to pathologies involving lysosomal enzyme missorting has not been tested
  4. 2021 Low

    Proximity labeling identified VAPB as a novel STX10-proximal protein, suggesting a potential ER–TGN membrane contact site connection, though functional validation is lacking.

    Evidence BioID proximity labeling with BirA*-Stx10 and mass spectrometry in human cells (tag artifacts noted by authors)

    PMID:34323972

    Open questions at the time
    • No reciprocal validation or functional assay for the STX10–VAPB interaction
    • BirA* tag altered STX10 localization, limiting confidence in interactome data
    • Physiological relevance of a STX10–VAPB link to ER–TGN contact sites is untested

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis for STX10 selectivity within the TGN SNARE network, the identity of the compensating SNARE in rodents that lack STX10, and the functional significance of the STX10–VAPB proximity remain open questions.
  • No crystal or cryo-EM structure of the STX10-containing SNARE complex
  • Rodent compensatory mechanism for MPR retrieval without STX10 is uncharacterized
  • In vivo relevance of STX10 loss in human tissues or disease models has not been assessed

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2
Localization
GO:0005794 Golgi apparatus 4 GO:0005768 endosome 2
Pathway
R-HSA-5653656 Vesicle-mediated transport 3 R-HSA-9609507 Protein localization 1
Complex memberships
STX10/STX16/Vti1a/VAMP3 SNARE complex

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 Human syntaxin 10 (STX10) was cloned as a new member of the syntaxin family, encoding a 249-amino acid polypeptide with coiled-coil domains and a C-terminal hydrophobic tail. Indirect immunofluorescence with polyclonal antibodies showed localization to intracellular membrane structures with perinuclear staining co-localizing with the Golgi SNARE GS28. Brefeldin A (but not wortmannin) treatment altered the staining pattern, indicating localization to the trans-Golgi network. Molecular cloning, indirect immunofluorescence, co-localization with Golgi markers, brefeldin A/wortmannin treatment Biochemical and biophysical research communications Medium 9446797
2005 Human GARP complex (hVps52/53/54) was identified as an interactor of STX10 at the trans-Golgi network, mediated through hVps52. STX10 was identified as the binding partner of the GARP tethering complex in human cells, implicating it in membrane docking and fusion events at the Golgi. This is distinct from yeast, where GARP interacts with Tlg1p (the STX10 ortholog). Co-immunoprecipitation, subcellular fractionation, immunostaining Experimental cell research Medium 15878329
2005 STX10 co-localizes with syntaxins 6 and 16 at the TGN and co-immunoprecipitates with both. However, STX10 knockdown does not inhibit endosome-to-TGN transport of shiga toxin, does not affect TGN localization of STX6/16, and does not interact with the SM protein Vps45, distinguishing it functionally from the STX16-based SNARE complex. STX10 reciprocally co-immunoprecipitates endosomal syntaxin 12/13, and its knockdown affects surface expression of transferrin receptor (TfR) and induces formation of an immobile TfR pool, suggesting a role at the TGN-endosome boundary. siRNA knockdown, co-immunoprecipitation, fluorescence microscopy, transport assays (shiga toxin), transferrin receptor surface expression assay Molecular membrane biology Medium 16154903
2008 A SNARE complex comprising STX10, STX16, Vti1a, and VAMP3 is required for transport of mannose 6-phosphate receptors (MPRs) from late endosomes to the trans-Golgi network (TGN) in human cells, operating downstream of Rab9 GTPase and the tether GCC185. Depletion of STX10 causes MPR missorting and hypersecretion of hexosaminidase. This route is distinct from the STX6-dependent pathway used for TGN46 and cholera toxin transport from early endosomes. Mouse and rat cells lack STX10 and must use a different t-SNARE for this process. GCC185 binds directly to STX16 and is competed by Rab6. siRNA depletion, co-immunoprecipitation, hexosaminidase secretion assay, MPR localization by immunofluorescence, cholera toxin/TGN46 transport assays The Journal of cell biology High 18195106
1999 STX10 mRNA is expressed in human peripheral blood lymphocytes and SH-SY5Y neuroblastoma cells but not in human neutrophils or neutrophil-differentiated HL-60 cells, indicating cell-type-specific expression of STX10. RT-PCR, cloning, sequencing Journal of leukocyte biology Low 10080545
2021 Using BioID proximity labeling with BirA*-Stx10 fusion constructs, a novel eukaryotic protein-protein interaction between STX10 and VAPB was identified in human cells. However, the BirA* tag altered STX10 localization during Chlamydia trachomatis and Coxiella burnetii infection, limiting interpretation of infection-context data. BioID proximity labeling, mass spectrometry Pathogens and disease Low 34323972

Source papers

Stage 0 corpus · 54 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2021 Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. Nature 532 33845483
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2015 A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell 433 26638075
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2021 A proximity-dependent biotinylation map of a human cell. Nature 339 34079125
2018 An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations. Nature communications 201 29568061
2019 Genomic and transcriptomic association studies identify 16 novel susceptibility loci for venous thromboembolism. Blood 182 31420334
2014 Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation. The Plant cell 162 25248552
2019 A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape. Nature immunology 159 30833792
2008 Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PloS one 148 18461144
2008 A syntaxin 10-SNARE complex distinguishes two distinct transport routes from endosomes to the trans-Golgi in human cells. The Journal of cell biology 144 18195106
2019 Mapping the proximity interaction network of the Rho-family GTPases reveals signalling pathways and regulatory mechanisms. Nature cell biology 137 31871319
2019 The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2. Molecular cell 124 30639242
2005 Characterization of the human GARP (Golgi associated retrograde protein) complex. Experimental cell research 109 15878329
2017 The interactome of metabolic enzyme carbonic anhydrase IX reveals novel roles in tumor cell migration and invadopodia/MMP14-mediated invasion. Oncogene 96 28692057
2021 SARS-CoV-2-host proteome interactions for antiviral drug discovery. Molecular systems biology 86 34709727
2018 Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability. Nature communications 73 30194290
2011 Genome-wide expression quantitative trait loci (eQTL) analysis in maize. BMC genomics 47 21718468
2004 Narcotic antagonists in drug dependence: pilot study showing enhancement of compliance with SYN-10, amino-acid precursors and enkephalinase inhibition therapy. Medical hypotheses 47 15288384
2022 NUDT21 limits CD19 levels through alternative mRNA polyadenylation in B cell acute lymphoblastic leukemia. Nature immunology 46 36138187
2005 Trans-Golgi network syntaxin 10 functions distinctly from syntaxins 6 and 16. Molecular membrane biology 45 16154903
2020 A combination of linkage mapping and GWAS brings new elements on the genetic basis of yield-related traits in maize across multiple environments. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 43 32594266
2021 BioID reveals an ATG9A interaction with ATG13-ATG101 in the degradation of p62/SQSTM1-ubiquitin clusters. EMBO reports 42 34369648
2023 Evolutionarily conserved regulators of tau identify targets for new therapies. Neuron 39 36610398
2016 The STX6-VTI1B-VAMP3 complex facilitates xenophagy by regulating the fusion between recycling endosomes and autophagosomes. Autophagy 39 27791468
1998 Syntaxin 10: a member of the syntaxin family localized to the trans-Golgi network. Biochemical and biophysical research communications 38 9446797
2021 The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation. PLoS pathogens 37 34597346
1999 Co-expression of several human syntaxin genes in neutrophils and differentiating HL-60 cells: variant isoforms and detection of syntaxin 1. Journal of leukocyte biology 35 10080545
2021 C5orf51 is a component of the MON1-CCZ1 complex and controls RAB7A localization and stability during mitophagy. Autophagy 33 34432599
2017 Quantitative Trait Locus Analysis for Deep-Sowing Germination Ability in the Maize IBM Syn10 DH Population. Frontiers in plant science 31 28588594
2019 Combined GWAS and QTL analysis for dissecting the genetic architecture of kernel test weight in maize. Molecular genetics and genomics : MGG 27 31807910
2020 Phosphodiesterase 2A2 regulates mitochondria clearance through Parkin-dependent mitophagy. Communications biology 26 33087821
2022 QTL Mapping Low-Temperature Germination Ability in the Maize IBM Syn10 DH Population. Plants (Basel, Switzerland) 17 35050102
2020 Combined linkage mapping and association analysis reveals genetic control of maize kernel moisture content. Physiologia plantarum 13 32754968
2019 Genetic dissection of stalk lodging-related traits using an IBM Syn10 DH population in maize across three environments (Zea mays L.). Molecular genetics and genomics : MGG 12 31139941
2021 Genetic dissection of maize seedling traits in an IBM Syn10 DH population under the combined stress of lead and cadmium. Molecular genetics and genomics : MGG 11 34117523
1993 Studies of a sperm/placenta cross-reacting antigen, STX-10. Journal of reproductive immunology 8 7515965
2023 Combined linkage mapping and association analysis uncovers candidate genes for 25 leaf-related traits across three environments in maize. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 7 36662253
2022 Combined QTL mapping and RNA-Seq pro-filing reveal candidate genes related to low-temperature tolerance in maize. Molecular breeding : new strategies in plant improvement 7 37312966
2021 Shifting proteomes: limitations in using the BioID proximity labeling system to study SNARE protein trafficking during infection with intracellular pathogens. Pathogens and disease 7 34323972
2023 A Combination of QTL Mapping and GradedPool-Seq to Dissect Genetic Complexity for Gibberella Ear Rot Resistance in Maize Using an IBM Syn10 DH Population. Plant disease 4 36131495
2024 Combining genome-wide association study and linkage mapping in the genetic dissection of amylose content in maize (Zea mays L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 3 38872054
2025 Utilizing Multi-omics analysis to elucidate the role of mitochondrial gene defects in Gastric cancer progression. PloS one 2 40489463
2025 Immune Microenvironment Characterization and Machine Learning-Guided Identification of Diagnostic Biomarkers for Ulcerative Colitis. Journal of inflammation research 1 40661186
2025 Dysregulation of U12-Type Splicing in Lupus Neutrophils. bioRxiv : the preprint server for biology 1 41279038
2024 Quantitative trait locus analysis of gray leaf spot resistance in the maize IBM Syn10 DH population. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 1 39002016
2026 Dysregulation of U12-Type Splicing in Lupus Neutrophils. Arthritis & rheumatology (Hoboken, N.J.) 0 41524512