Affinage

SPATA6

Spermatogenesis-associated protein 6 · UniProt Q9NWH7

Length
488 aa
Mass
56.0 kDa
Annotated
2026-06-10
53 papers in source corpus 11 papers cited in narrative 11 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SPATA6 is a testis-enriched, haploid germ cell-expressed protein essential for assembly of the sperm head-tail coupling apparatus (HTCA), specifically the segmented columns and capitulum of the connecting piece; loss of Spata6 in mice produces acephalic spermatozoa and male sterility (PMID:25605924, PMID:12771232). SPATA6 functions in myosin-based microfilament transport during late spermiogenesis, interacting with myosin subunits including MYL6 (PMID:25605924). At the sperm head-tail junction it operates within a molecular complex together with SUN5 and PMFBP1 to physically connect the head to the tail (PMID:30032984). Proper SPATA6 function depends on a dedicated folding step: the co-chaperone BAG5 forms a complex with HSPA8 and enhances HSPA8 substrate affinity to promote SPATA6 folding, and BAG5 loss yields misfolded SPATA6, defective HTCA assembly, and acephalic sperm that phenocopy SPATA6 deficiency (PMID:38454159). SPATA6 protein stability and HTCA localization further require CFAP52, CEP135, NME5, and SPATA20, whose loss each reduces SPATA6 levels or its presence at the HTCA (PMID:38126872, PMID:36415156, PMID:40095067, PMID:41499646). SPATA6 expression is post-transcriptionally controlled by miR-23a/b-3p, which directly targets its 3'UTR and is elevated in oligoasthenozoospermic men with reduced SPATA6 (PMID:31056312).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2001 Low

    Established SPATA6 (rat ortholog SRF-1) as a testis-restricted gene expressed during spermatogenesis, raising the hypothesis it acts as a molecular motor in male germ cells.

    Evidence Differential display cloning, RT-PCR and in situ hybridization in rat testis

    PMID:11735130

    Open questions at the time
    • Function inferred only from sequence homology to kinesin-related proteins
    • No direct functional assay
    • Cellular role undefined
  2. 2003 Medium

    Defined the human SPATA6 protein as a 488-aa, ~53 kDa product expressed exclusively in haploid germ cells, fixing protein identity and expression pattern.

    Evidence cDNA cloning, RT-PCR, in situ hybridization, Western blot and chromosomal mapping

    PMID:12771232

    Open questions at the time
    • Homology-based motor assignment not functionally tested
    • No interacting partners or subcellular role established
  3. 2015 High

    Pinned SPATA6 to a specific structure and process — formation of the segmented columns and capitulum of the connecting piece — and linked it to myosin-based transport, explaining how its loss causes acephalic spermatozoa.

    Evidence Spata6 knockout mouse with acephalic sperm/sterility phenotype plus proteomic and Co-IP identification of myosin subunit (MYL6) interactions

    PMID:25605924

    Open questions at the time
    • Mechanism of myosin-based transport not reconstituted
    • Direct vs indirect MYL6 interaction not resolved
    • Structural basis of HTCA assembly unknown
  4. 2018 Medium

    Placed SPATA6 in a defined junctional complex with SUN5 and PMFBP1, establishing the molecular partners that physically couple sperm head to tail.

    Evidence Pmfbp1 knockout mouse, immunofluorescence and Co-IP showing SPATA6/SUN5/PMFBP1 cooperation

    PMID:30032984

    Open questions at the time
    • Stoichiometry and direct binding interfaces of the complex not defined
    • Single lab
    • Order of complex assembly unclear
  5. 2019 Medium

    Identified a post-transcriptional control mechanism, showing SPATA6 mRNA is a direct miR-23a/b-3p target whose dysregulation lowers SPATA6 in subfertile men.

    Evidence Dual luciferase reporter with 3'UTR mutagenesis, Western blot and RT-qPCR in human sperm

    PMID:31056312

    Open questions at the time
    • In vivo contribution of this miRNA axis to fertility not tested
    • Single lab
    • Other regulators of SPATA6 expression unexplored
  6. 2023 Medium

    Showed SPATA6 protein stability depends on CFAP52, identifying an upstream factor whose loss reduces SPATA6 and abolishes connecting piece formation.

    Evidence Cfap52 knockout mouse, Co-IP, immunofluorescence and Western blot

    PMID:38126872

    Open questions at the time
    • Whether CFAP52 directly stabilizes SPATA6 or acts indirectly unresolved
    • Single lab
  7. 2024 High

    Revealed a chaperone requirement for SPATA6 folding, with BAG5 activating HSPA8-mediated folding of SPATA6, explaining why folding failure phenocopies SPATA6 loss.

    Evidence Bag5 knockout mouse, in vivo/in vitro folding assays, reciprocal Co-IP of BAG5-HSPA8 complex and immunofluorescence

    PMID:38454159

    Open questions at the time
    • Direct chaperone-substrate contact between HSPA8 and SPATA6 not mapped
    • Folding of SPATA6 vs other HTCA clients not distinguished
  8. 2022 Medium

    Extended SPATA6 dependency to human disease, linking SPATA20 loss-of-function to reduced SPATA6 and defective head-tail conjunction.

    Evidence Whole-exome and Sanger sequencing, Western blot and immunofluorescence in patient sperm

    PMID:36415156

    Open questions at the time
    • Single case study
    • Direct SPATA20-SPATA6 interaction not tested
    • Mechanism of SPATA6 reduction unclear
  9. 2025 Medium

    Identified CEP135 and NME5 as additional upstream factors required for SPATA6 abundance/localization at the HTCA, broadening the network controlling SPATA6 deposition.

    Evidence Conditional Cep135 knockout mouse with Co-IP and proteomics; immunofluorescence/EM of NME5-variant patient sperm

    PMID:40095067 PMID:41499646

    Open questions at the time
    • NME5-SPATA6 relationship rests on single-patient immunofluorescence with no interaction assay
    • Direct vs indirect regulation by CEP135 not resolved
    • Hierarchy among CFAP52/CEP135/NME5/SPATA20 unmapped

Open questions

Synthesis pass · forward-looking unresolved questions
  • The biochemical activity of SPATA6 itself — whether it acts as a motor, adaptor, or structural scaffold within the connecting piece — and the structural architecture of the SPATA6-containing HTCA complex remain undefined.
  • No enzymatic or motor activity directly demonstrated
  • No structure of SPATA6 or its complexes
  • Assembly hierarchy linking folding, stabilization and junctional partners not integrated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 1
Localization
GO:0005856 cytoskeleton 1
Pathway
R-HSA-1474165 Reproduction 2
Complex memberships
SPATA6-SUN5-PMFBP1 head-tail junction complexsperm head-tail coupling apparatus (HTCA)

Evidence

Reading pass · 11 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2015 SPATA6 is required for formation of the segmented columns and capitulum of the sperm connecting piece (head-tail coupling apparatus). Inactivation of Spata6 in mice leads to acephalic spermatozoa and male sterility. Proteomic analyses revealed SPATA6 interacts with myosin subunits (e.g., MYL6), implicating it in myosin-based microfilament transport during late spermiogenesis. Mouse knockout (Spata6 inactivation via homologous recombination), proteomic analysis, co-immunoprecipitation/interaction studies Proceedings of the National Academy of Sciences of the United States of America High 25605924
2003 SPATA6 encodes a 488 amino acid protein with similarity to the motor domain of kinesin-related proteins and C. elegans neural calcium sensor protein (NCS-2). The 1.8 and 1.2 kb transcripts are exclusively expressed in testis and specifically in haploid germ cells. Western blot detects a single ~53 kDa protein. The gene was localized to chromosome 1, region p32-35 in humans. cDNA cloning, RT-PCR, in situ hybridization, Western blot with antipeptide antiserum, chromosomal localization Molecular human reproduction Medium 12771232
2018 PMFBP1 cooperates with SUN5 and SPATA6 at the sperm head-tail junction. Disruption of Pmfbp1 in male mice leads to acephalic spermatozoa and disrupts PMFBP1's cooperation with SPATA6 and SUN5 in connecting the sperm head to the tail. Mouse knockout of Pmfbp1, immunofluorescence, co-immunoprecipitation demonstrating protein complex American journal of human genetics Medium 30032984
2024 BAG5 forms a complex with HSPA8 and promotes proper folding of SPATA6 by enhancing HSPA8's affinity for substrate proteins. BAG5-deficient male mice show misfolded SPATA6 (along with MYO5A, MYL6, DYNLT1, DCTN1, and DNAL1), abnormal HTCA assembly, acephalic spermatozoa syndrome and male infertility, phenocopying SPATA6-deficient mice. BAG5 knockout mouse, in vivo and in vitro protein folding assays, co-immunoprecipitation (BAG5-HSPA8 complex), immunofluorescence EMBO reports High 38454159
2023 CFAP52 interacts with SPATA6 and is essential for its stability. CFAP52 knockout mice show loss of connecting piece formation and acephalic spermatozoa syndrome, with SPATA6 protein levels reduced upon CFAP52 deficiency. Co-immunoprecipitation (CFAP52-SPATA6 interaction), Cfap52 knockout mouse, immunofluorescence, Western blot eLife Medium 38126872
2022 Loss-of-function mutation in SPATA20 leads to decreased expression of SPATA6, which plays a vital role in the assembly of the sperm head-tail conjunction in humans. The SPATA20 nonsense mutation caused degradation of SPATA20 protein with associated reduced SPATA6 levels in patient sperm. Whole-exome sequencing, Sanger sequencing, Western blot, immunofluorescence in patient samples Clinical genetics Medium 36415156
2025 CEP135 interacts with SPATA6 and AKAP3, regulating their expression and stability. CEP135 knockout mice show acephalic spermatozoa with head-to-tail connection defects, and proteomic analysis revealed significant reduction in SPATA6 protein levels upon CEP135 deletion. Conditional Cep135 knockout mouse (Stra8-Cre), co-immunoprecipitation, proteomic analysis, immunofluorescence Cellular and molecular life sciences : CMLS Medium 40095067
2025 NME5 loss-of-function results in near absence of SPATA6 at the head-tail coupling apparatus (HTCA) in human sperm, as confirmed by immunofluorescence analysis, indicating NME5 is required upstream of SPATA6 for HTCA integrity. Immunofluorescence of patient sperm (NME5 frameshift variant), ultrastructural electron microscopy Clinical genetics Low 41499646
2019 SPATA6 mRNA is a direct target of miR-23a/b-3p in human sperm. Dual luciferase assays confirmed miR-23a/b-3p binds to the 3'UTR of SPATA6 mRNA. Mutations in the miR-23a/b-3p binding site within the SPATA6 3'UTR abrogated responsiveness. SPATA6 protein levels were significantly lower in oligoasthenozoospermic men with elevated miR-23a/b-3p. Dual luciferase reporter assay, site-directed mutagenesis of 3'UTR, Western blot, RT-qPCR Fertility and sterility Medium 31056312
2021 In sheep Leydig cells, SPATA6 is localized in cytoplasm and nucleus. SPATA6 interference promotes apoptosis (increased BAX/BCL-2 ratio), blocks cell cycle at G2/M phase with downregulation of CDK1 and CCNB1. SPATA6 overexpression promotes cell cycle progression and upregulates CDK1, CDK4, CCND1, CCND2. SPATA6 overexpression also promotes testosterone secretion and StAR expression. siRNA knockdown and overexpression in primary Leydig cells, flow cytometry, Western blot, immunofluorescence localization Theriogenology Low 33667862
2001 The rat Spata6 ortholog (SRF-1) is expressed exclusively in testis beginning at 5 weeks of age, with expression in spermatocytes. The deduced amino acid sequence shows partial homology with kinesin-related proteins, suggesting a role as a molecular motor in meiosis. Differential display cloning, RT-PCR, in situ hybridization Biochemical and biophysical research communications Low 11735130

Source papers

Stage 0 corpus · 53 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Spata6 is required for normal assembly of the sperm connecting piece and tight head-tail conjunction. Proceedings of the National Academy of Sciences of the United States of America 152 25605924
2005 Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences of the United States of America 142 15695584
2018 Mutations in PMFBP1 Cause Acephalic Spermatozoa Syndrome. American journal of human genetics 97 30032984
2009 Altered carbohydrate metabolism in the storage roots of sweet potato plants overexpressing the SRF1 gene, which encodes a Dof zinc finger transcription factor. Planta 61 19618208
2020 Increased DNA methylation in the spermatogenesis-associated (SPATA) genes correlates with infertility. Andrology 50 31838782
2019 Exploring the antimicrobial resistance profiles of WHO critical priority list bacterial strains. BMC microbiology 39 31870288
2005 Analysis of genes developmentally regulated during storage root formation of sweet potato. Journal of plant physiology 38 15700424
2019 Differential expression of miR-23a/b-3p and its target genes in male patients with subfertility. Fertility and sterility 35 31056312
2016 Cell wall glycopolymers of Firmicutes and their role as nonprotein adhesins. FEBS letters 34 27396949
2017 Functional changes in mRNA expression and alternative pre-mRNA splicing associated with the effects of nutrition on apoptosis and spermatogenesis in the adult testis. BMC genomics 28 28068922
2022 Identification of nonfunctional SPATA20 causing acephalic spermatozoa syndrome in humans. Clinical genetics 25 36415156
2018 High Cholesterol Diet-Induced Changes in Oxysterol and Scavenger Receptor Levels in Heart Tissue. Oxidative medicine and cellular longevity 24 30008986
1987 Genetic analysis of adult-specific surface antigenic differences between varieties of the nematode Caenorhabditis elegans. Genetics 23 3692138
2021 Effects of SPATA6 on proliferation, apoptosis and steroidogenesis of Hu sheep Leydig cells in vitro. Theriogenology 21 33667862
2003 Characterization, expression pattern and chromosomal localization of the spermatogenesis associated 6 gene (Spata6). Molecular human reproduction 19 12771232
2021 Genome-Wide Association Studies for Milk Somatic Cell Score in Romanian Dairy Cattle. Genes 18 34680890
2020 Molecular and Cellular Interactions of Scavenger Receptor SR-F1 With Complement C1q Provide Insights Into Its Role in the Clearance of Apoptotic Cells. Frontiers in immunology 17 32296440
2001 Transcriptional regulation of the leptin gene promoter in rat GH3 pituitary and C6 glioma cells. Molecular and cellular endocrinology 16 11369443
2024 BAG5 regulates HSPA8-mediated protein folding required for sperm head-tail coupling apparatus assembly. EMBO reports 15 38454159
2020 Comparison of spermatozoal RNA extraction methods in goats. Analytical biochemistry 14 33285124
2021 Circular RNA circSPATA6 Inhibits the Progression of Oral Squamous Cell Carcinoma Cells by Regulating TRAF6 via miR-182. Cancer management and research 13 33654430
2023 Exome sequencing and functional analyses revealed CETN1 variants leads to impaired cell division and male fertility. Human molecular genetics 12 36048845
2023 Synergistic Encapsulation of Paclitaxel and Sorafenib by Methoxy Poly(Ethylene Glycol)-b-Poly(Caprolactone) Polymeric Micelles for Ovarian Cancer Therapy. Pharmaceutics 12 37111691
2023 Identification of CFAP52 as a novel diagnostic target of male infertility with defects of sperm head-tail connection and flagella development. eLife 12 38126872
2001 A novel spermatogenesis-related factor-1 gene expressed in maturing rat testis. Biochemical and biophysical research communications 12 11735130
2018 Genome-wide association for testis weight in the diversity outbred mouse population. Mammalian genome : official journal of the International Mammalian Genome Society 11 29691636
2015 The role of spermatogenesis-associated protein 6 in testicular germ cell tumors. International journal of clinical and experimental pathology 11 26464655
2011 Srf1 is a novel regulator of phospholipase D activity and is essential to buffer the toxic effects of C16:0 platelet activating factor. PLoS genetics 11 21347278
2002 Domestic wastewater biosolids accumulation by liquid state bioconversion process for rapid composting. Journal of environmental science and health. Part A, Toxic/hazardous substances & environmental engineering 10 12369644
2019 Ovarian transcriptomic signatures of zebrafish females resistant to different environmental perturbations. Journal of experimental zoology. Part B, Molecular and developmental evolution 9 30945804
2022 Identification of Circular RNAs of Testis and Caput Epididymis and Prediction of Their Potential Functional Roles in Donkeys. Genes 8 36672807
2021 Insights into the ligand binding specificity of SREC-II (scavenger receptor expressed by endothelial cells). FEBS open bio 8 34328698
2018 Co-ordinated expression of the VEGF system components in granulosa cells to develop a proangiogenic autocrine milieu during ovarian follicle development. Molecular reproduction and development 8 30431677
2024 Comparative transcriptomics identifies genes underlying growth performance of the Pacific black-lipped pearl oyster Pinctada margaritifera. BMC genomics 6 39049022
2024 Structure of scavenger receptor SCARF1 and its interaction with lipoproteins. eLife 6 39541158
2023 Dynamic cellular and molecular characteristics of spermatogenesis in the viviparous marine teleost Sebastes schlegelii†. Biology of reproduction 6 36401879
2008 Expression and comparative genomics of two serum response factor genes in zebrafish. The International journal of developmental biology 5 18415940
2024 The association between teat shape and clinical mastitis. Journal of dairy science 4 39343219
2025 Downregulation of spermatogenesis-associated transcripts in the spermatozoa of idiopathic infertile men. Andrology 3 40346865
2025 Loss of Cep135 causes oligoasthenoteratozoospermia and male infertility in mice. Cellular and molecular life sciences : CMLS 2 40095067
2025 Genome-wide association study on dairy goat milk production traits using three models. Frontiers in genetics 2 40919429
2023 Molecular characterization of SPATA6 and association of its SNPs with testicular size in sheep. Theriogenology 2 38096624
2025 A high content clonogenic survival drug screening identifies maytansine as a potent radiosensitizer for meningiomas. Frontiers in immunology 1 40170861
2025 Evaluating the Role of Nutrient Competition in Debaryomyces hansenii Biocontrol Activity Against Spoilage Molds in the Meat Industry. Journal of fungi (Basel, Switzerland) 1 40278063
2025 Immunolocalization and proteomic analyses of IZUMO1 in porcine spermatozoa. Frontiers in cell and developmental biology 1 40469420
2025 A missense mutation in TCFL5 is associated with male infertility due to oligoasthenoteratozoospermia. Molecular genetics and genomics : MGG 1 40711600
2025 Unraveling the Role of Perivascular Macrophages in Alzheimer's Disease: Insights from the Crosstalk between Immunometabolism and Ferroptosis. Current neuropharmacology 1 40976895
2024 Energy and environmental assessment of solid recovered fuels valorisation: Waste-to-Chemicals options vs co-combustion in cement plants. Waste management (New York, N.Y.) 1 39418862
2018 [Advances in the studies of teratospermia-related genes]. Zhonghua nan ke xue = National journal of andrology 1 32212452
2007 [Study of the binding of nuclear proteins from Plasmodium berghei strains with different chloroquine sensitivity to oligonucleotides corresponding to regulatory elements of multidrug resistance (mdr1) gene]. Biomeditsinskaia khimiia 1 18078069
2026 Integrative Machine Learning Framework Revealing TRPM4-Associated Signatures and Identifying SPATA6 as a Potential Biomarker in Prostate Cancer. Journal of Cancer 0 42179785
2025 Reproductive Dysfunction and Testicular Epigenetic Alterations in Male Rats with Experimental Amebiasis: Evaluation of SPATA6 Methylation and Therapeutic Outcomes. Acta parasitologica 0 41148541
2025 Discovery of a Pathogenic NME5 Variant Underlying Acephalic Spermatozoa Syndrome: Unraveling a Novel Genotype-Phenotype Association in Male Infertility. Clinical genetics 0 41499646

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