Affinage

SPATA6

Spermatogenesis-associated protein 6 · UniProt Q9NWH7

Length
488 aa
Mass
56.0 kDa
Annotated
2026-04-28
56 papers in source corpus 10 papers cited in narrative 11 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SPATA6 is a testis-enriched protein essential for the assembly of the sperm head-tail coupling apparatus (HTCA), specifically the segmented columns and capitulum that physically connect the flagellum to the sperm head during spermiogenesis. Knockout of Spata6 in mice produces acephalic spermatozoa and complete male sterility, and SPATA6 functions within a multi-protein complex at the HTCA that includes PMFBP1, SUN5, CFAP52, and CEP135, where partner proteins CFAP52 and CEP135 are required for SPATA6 stability (PMID:25605924, PMID:30032984, PMID:38126872, PMID:40095067). The BAG5–HSPA8 chaperone complex promotes proper folding of SPATA6 and its cargo-transport partners (MYO5A, MYL6, dynein subunits), and loss of BAG5 phenocopies SPATA6 deficiency (PMID:38454159). SPATA6 expression is regulated upstream by SPATA20 and NME5 and post-transcriptionally by miR-23a/b-3p, which directly binds the SPATA6 3′UTR (PMID:36415156, PMID:31056312).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2003 Medium

    Initial cloning revealed SPATA6 as a testis-specific, haploid germ cell–expressed gene with sequence similarity to kinesin motor domains, raising the hypothesis that it participates in intracellular transport during spermiogenesis.

    Evidence RT-PCR, in situ hybridization, and Western blot in mouse testis

    PMID:12771232

    Open questions at the time
    • Kinesin-like motor domain homology is computational; no direct ATPase or motility assay performed
    • Functional role of the truncated 32 kDa isoform remains uncharacterized
  2. 2015 High

    Loss-of-function studies established that SPATA6 is required for segmented column and capitulum formation at the HTCA, with knockout mice producing acephalic spermatozoa and being completely infertile, and proteomic analysis identified myosin subunits (MYL6) as interactors, linking SPATA6 to microfilament-based transport.

    Evidence Spata6 knockout mouse via homologous recombination, electron microscopy, fertility assay, co-IP/mass spectrometry

    PMID:25605924

    Open questions at the time
    • Myosin interaction identified by single proteomic pull-down without reciprocal validation or in vitro reconstitution
    • Structural basis of segmented column assembly by SPATA6 unknown
  3. 2018 Medium

    Identification of PMFBP1 as a cooperating partner with SUN5 and SPATA6 placed SPATA6 within a defined multi-protein complex at the head-tail junction, showing that disruption of any member phenocopies HTCA failure.

    Evidence Pmfbp1 knockout mouse, co-immunoprecipitation, sperm morphology analysis

    PMID:30032984

    Open questions at the time
    • Direct binding interface between SPATA6, PMFBP1, and SUN5 not mapped
    • Order of assembly of complex subunits not determined
  4. 2019 Medium

    Demonstration that miR-23a/b-3p directly targets the SPATA6 3′UTR established a post-transcriptional regulatory axis controlling SPATA6 abundance in sperm.

    Evidence Dual luciferase reporter assay with SPATA6 3′UTR and site-directed mutagenesis of miRNA binding site

    PMID:31056312

    Open questions at the time
    • In vivo functional consequence of miR-23a/b-3p manipulation on HTCA assembly not tested
    • Whether miR-23a/b-3p regulation is physiologically rate-limiting for SPATA6 is unknown
  5. 2021 Medium

    Beyond spermatid-intrinsic roles, SPATA6 knockdown in Leydig cells revealed effects on apoptosis, G2/M cell cycle progression, and testosterone secretion, suggesting a broader role in testicular cell biology.

    Evidence siRNA knockdown and overexpression in primary sheep Leydig cells, flow cytometry, hormone assay

    PMID:33667862

    Open questions at the time
    • Leydig cell function observed only in sheep primary culture; relevance to mouse or human Leydig cells not confirmed
    • No downstream signaling pathway or direct binding partner identified for the Leydig cell phenotype
  6. 2022 Medium

    A human acephalic spermatozoa patient with a SPATA20 nonsense mutation showed reduced SPATA6 protein, positioning SPATA20 as an upstream regulator of SPATA6 in the HTCA assembly pathway.

    Evidence Whole-exome sequencing, Western blot and immunofluorescence of patient sperm

    PMID:36415156

    Open questions at the time
    • Single patient case without functional rescue
    • Mechanism by which SPATA20 maintains SPATA6 levels (transcriptional vs. post-translational) not resolved
  7. 2023 High

    Reciprocal co-IP confirmed CFAP52 as a direct SPATA6 interactor required for SPATA6 protein stability, with CFAP52 knockout phenocopying connecting piece failure and producing both acephalic and MMAF sperm phenotypes.

    Evidence Cfap52 knockout mouse, reciprocal co-IP, transmission electron microscopy

    PMID:38126872

    Open questions at the time
    • Whether CFAP52 stabilizes SPATA6 through direct binding or indirectly via a scaffold is not distinguished
    • The mixed acephalic/MMAF phenotype suggests additional CFAP52 functions beyond SPATA6 stabilization
  8. 2024 High

    The BAG5–HSPA8 chaperone complex was identified as the folding machinery for SPATA6 and its cargo-transport partners (MYO5A, MYL6, dynein subunits), providing a mechanistic explanation for how SPATA6 achieves its functional conformation; BAG5 loss phenocopies SPATA6 deficiency.

    Evidence Bag5 knockout mouse, in vivo/in vitro co-IP, protein folding assays, fertility analysis

    PMID:38454159

    Open questions at the time
    • Whether BAG5-HSPA8 acts co-translationally or post-translationally on SPATA6 is not determined
    • Relative contributions of SPATA6 misfolding versus misfolding of myosin/dynein to the acephalic phenotype not separated
  9. 2025 Medium

    CEP135 was shown to interact with SPATA6 and regulate its expression, and NME5 loss-of-function in a human patient resulted in near-complete absence of SPATA6 at the HTCA, expanding the upstream regulatory network controlling SPATA6 abundance.

    Evidence Conditional Cep135 knockout mouse (Stra8-Cre), co-IP, proteomics; NME5-deficient patient sperm immunofluorescence and EM

    PMID:40095067 PMID:41499646

    Open questions at the time
    • NME5–SPATA6 link based on a single patient without rescue experiment
    • Whether CEP135 and NME5 act in the same or parallel pathways upstream of SPATA6 is unknown
    • Direct versus indirect regulation of SPATA6 by CEP135 not distinguished

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis of SPATA6 assembly into segmented columns, the hierarchy among its upstream regulators (SPATA20, NME5, CEP135, CFAP52), and the precise cargo-transport mechanism coupling myosin/dynein to HTCA biogenesis remain unresolved.
  • No atomic-resolution or cryo-EM structure of SPATA6 or the HTCA complex
  • Epistasis relationships among SPATA20, NME5, CEP135, and CFAP52 not systematically tested
  • Whether SPATA6 directly bridges myosin and dynein motors or serves as a scaffold is not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 2
Localization
GO:0005856 cytoskeleton 2 GO:0005634 nucleus 1 GO:0005829 cytosol 1
Pathway
R-HSA-1474165 Reproduction 4
Complex memberships
HTCA connecting piece complex (SPATA6–PMFBP1–SUN5)

Evidence

Reading pass · 11 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2015 SPATA6 is required for formation of the segmented columns and the capitulum of the sperm connecting piece (head-tail coupling apparatus), structures essential for linking the developing flagellum to the sperm head during late spermiogenesis. Inactivation of Spata6 in mice leads to acephalic spermatozoa and male sterility. Mouse knockout (homologous recombination), electron microscopy of sperm ultrastructure, male fertility assay Proceedings of the National Academy of Sciences of the United States of America High 25605924
2015 SPATA6 interacts with myosin subunits (e.g., MYL6), implicating it in myosin-based microfilament transport during sperm head-tail coupling apparatus assembly. Proteomic analysis (co-immunoprecipitation/mass spectrometry) from Spata6 knockout mouse testes Proceedings of the National Academy of Sciences of the United States of America Medium 25605924
2003 SPATA6 encodes a ~49.7 kDa protein (detected as 53 kDa by Western blot) with sequence similarity to the motor domain of kinesin-related proteins and the C. elegans neural calcium sensor protein NCS-2. The gene is expressed as three mRNAs; the 1.8 and 1.2 kb transcripts are exclusively testis-expressed and specific to haploid germ cells (spermatids > spermatocytes/spermatogonia). A truncated 32 kDa isoform is predicted from the 1.2 kb transcript. RT-PCR, in situ hybridization, Western blot with C-terminal peptide antiserum, homologous recombination in ES cells Molecular human reproduction Medium 12771232
2018 PMFBP1 cooperates with SUN5 and SPATA6 in connecting the sperm head to the tail; disruption of Pmfbp1 in mice abrogates this cooperation and produces acephalic spermatozoa, establishing SPATA6 as part of a multi-protein complex at the head-tail junction. Mouse knockout, co-immunoprecipitation/interaction studies, sperm morphology analysis American journal of human genetics Medium 30032984
2024 BAG5 forms a complex with the chaperone HSPA8 and promotes proper folding of SPATA6 (as well as cargo-transport myosin proteins MYO5A and MYL6, and dynein proteins DYNLT1, DCTN1, DNAL1) by enhancing HSPA8's affinity for substrate proteins. BAG5 depletion causes SPATA6 misfolding, defective HTCA assembly, acephalic spermatozoa, and male infertility, phenocopying Spata6-deficient mice. Mouse knockout (BAG5-deficient), in vivo and in vitro co-immunoprecipitation, protein folding assays, sperm morphology and fertility analysis EMBO reports High 38454159
2022 Loss of SPATA20 leads to decreased expression of SPATA6 in humans, placing SPATA20 upstream of SPATA6 in the pathway required for sperm head-tail conjunction formation. Whole-exome sequencing of ASS patient with SPATA20 nonsense mutation, Western blot/immunofluorescence showing reduced SPATA6 protein Clinical genetics Medium 36415156
2023 CFAP52 interacts with SPATA6 and is essential for SPATA6 stability; CFAP52 knockout mice display failure of connecting piece formation, reduced SPATA6, and acephalic spermatozoa syndrome mixed with MMAF phenotype. Mouse knockout, co-immunoprecipitation, immunofluorescence, transmission electron microscopy eLife High 38126872
2025 CEP135 interacts with SPATA6 (and AKAP3) and regulates SPATA6 expression and stability; CEP135 deletion in mouse premeiotic germ cells (Stra8-Cre) leads to defects in acrosome, flagellum, and head-to-tail connections, with significant reduction of SPATA6 protein. Conditional mouse knockout (Stra8-Cre/Cep135flox), co-immunoprecipitation, proteomic analysis, immunofluorescence Cellular and molecular life sciences Medium 40095067
2019 SPATA6 is a direct target of miR-23a/b-3p: dual luciferase assays with the SPATA6 3'UTR confirmed direct binding, and mutations in the miR-23a/b-3p binding site abrogated responsiveness. SPATA6 mRNA and protein levels are inversely correlated with miR-23a/b-3p abundance in sperm. Dual luciferase reporter assay with SPATA6 3'UTR, site-directed mutagenesis of miRNA binding site, Western blot Fertility and sterility Medium 31056312
2025 Loss-of-function of NME5 results in near absence of SPATA6 at the HTCA in human sperm, as shown by immunofluorescence, indicating NME5 is required upstream of SPATA6 for normal HTCA structure. Immunofluorescence of patient sperm with NME5 frameshift variant, ultrastructural (EM) analysis Clinical genetics Low 41499646
2021 SPATA6 is localized to the cytoplasm and nucleus of Leydig cells and spermatogenic cells. SPATA6 knockdown in sheep Leydig cells promotes apoptosis (increased BAX/BCL-2), causes G2/M cell cycle arrest with downregulation of CDK1 and CCNB1, and reduces testosterone secretion/StAR expression; overexpression has opposing effects. siRNA knockdown and overexpression in primary sheep Leydig cells, flow cytometry, Western blot, hormone assay Theriogenology Medium 33667862

Source papers

Stage 0 corpus · 56 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Spata6 is required for normal assembly of the sperm connecting piece and tight head-tail conjunction. Proceedings of the National Academy of Sciences of the United States of America 149 25605924
2005 Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences of the United States of America 142 15695584
2018 Mutations in PMFBP1 Cause Acephalic Spermatozoa Syndrome. American journal of human genetics 96 30032984
2006 The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis. Developmental biology 92 17027738
2007 Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana. BMC plant biology 66 17397538
2009 Altered carbohydrate metabolism in the storage roots of sweet potato plants overexpressing the SRF1 gene, which encodes a Dof zinc finger transcription factor. Planta 57 19618208
2020 Increased DNA methylation in the spermatogenesis-associated (SPATA) genes correlates with infertility. Andrology 50 31838782
2019 Exploring the antimicrobial resistance profiles of WHO critical priority list bacterial strains. BMC microbiology 38 31870288
2005 Analysis of genes developmentally regulated during storage root formation of sweet potato. Journal of plant physiology 38 15700424
2019 Differential expression of miR-23a/b-3p and its target genes in male patients with subfertility. Fertility and sterility 34 31056312
2016 Cell wall glycopolymers of Firmicutes and their role as nonprotein adhesins. FEBS letters 32 27396949
2017 Functional changes in mRNA expression and alternative pre-mRNA splicing associated with the effects of nutrition on apoptosis and spermatogenesis in the adult testis. BMC genomics 27 28068922
2022 Identification of nonfunctional SPATA20 causing acephalic spermatozoa syndrome in humans. Clinical genetics 25 36415156
1987 Genetic analysis of adult-specific surface antigenic differences between varieties of the nematode Caenorhabditis elegans. Genetics 23 3692138
2018 High Cholesterol Diet-Induced Changes in Oxysterol and Scavenger Receptor Levels in Heart Tissue. Oxidative medicine and cellular longevity 22 30008986
2021 Effects of SPATA6 on proliferation, apoptosis and steroidogenesis of Hu sheep Leydig cells in vitro. Theriogenology 21 33667862
2003 Characterization, expression pattern and chromosomal localization of the spermatogenesis associated 6 gene (Spata6). Molecular human reproduction 19 12771232
2021 Genome-Wide Association Studies for Milk Somatic Cell Score in Romanian Dairy Cattle. Genes 17 34680890
2020 Molecular and Cellular Interactions of Scavenger Receptor SR-F1 With Complement C1q Provide Insights Into Its Role in the Clearance of Apoptotic Cells. Frontiers in immunology 17 32296440
2001 Transcriptional regulation of the leptin gene promoter in rat GH3 pituitary and C6 glioma cells. Molecular and cellular endocrinology 16 11369443
2020 Comparison of spermatozoal RNA extraction methods in goats. Analytical biochemistry 14 33285124
2024 BAG5 regulates HSPA8-mediated protein folding required for sperm head-tail coupling apparatus assembly. EMBO reports 13 38454159
2021 Circular RNA circSPATA6 Inhibits the Progression of Oral Squamous Cell Carcinoma Cells by Regulating TRAF6 via miR-182. Cancer management and research 13 33654430
2023 Synergistic Encapsulation of Paclitaxel and Sorafenib by Methoxy Poly(Ethylene Glycol)-b-Poly(Caprolactone) Polymeric Micelles for Ovarian Cancer Therapy. Pharmaceutics 12 37111691
2023 Identification of CFAP52 as a novel diagnostic target of male infertility with defects of sperm head-tail connection and flagella development. eLife 12 38126872
2001 A novel spermatogenesis-related factor-1 gene expressed in maturing rat testis. Biochemical and biophysical research communications 12 11735130
2023 Exome sequencing and functional analyses revealed CETN1 variants leads to impaired cell division and male fertility. Human molecular genetics 11 36048845
2018 Genome-wide association for testis weight in the diversity outbred mouse population. Mammalian genome : official journal of the International Mammalian Genome Society 11 29691636
2015 The role of spermatogenesis-associated protein 6 in testicular germ cell tumors. International journal of clinical and experimental pathology 11 26464655
2011 Srf1 is a novel regulator of phospholipase D activity and is essential to buffer the toxic effects of C16:0 platelet activating factor. PLoS genetics 10 21347278
2002 Domestic wastewater biosolids accumulation by liquid state bioconversion process for rapid composting. Journal of environmental science and health. Part A, Toxic/hazardous substances & environmental engineering 10 12369644
2019 Ovarian transcriptomic signatures of zebrafish females resistant to different environmental perturbations. Journal of experimental zoology. Part B, Molecular and developmental evolution 9 30945804
2022 Identification of Circular RNAs of Testis and Caput Epididymis and Prediction of Their Potential Functional Roles in Donkeys. Genes 8 36672807
2021 Insights into the ligand binding specificity of SREC-II (scavenger receptor expressed by endothelial cells). FEBS open bio 8 34328698
2018 Co-ordinated expression of the VEGF system components in granulosa cells to develop a proangiogenic autocrine milieu during ovarian follicle development. Molecular reproduction and development 8 30431677
2024 Structure of scavenger receptor SCARF1 and its interaction with lipoproteins. eLife 6 39541158
2023 Dynamic cellular and molecular characteristics of spermatogenesis in the viviparous marine teleost Sebastes schlegelii†. Biology of reproduction 6 36401879
2024 Comparative transcriptomics identifies genes underlying growth performance of the Pacific black-lipped pearl oyster Pinctada margaritifera. BMC genomics 5 39049022
2008 Expression and comparative genomics of two serum response factor genes in zebrafish. The International journal of developmental biology 5 18415940
2024 The association between teat shape and clinical mastitis. Journal of dairy science 4 39343219
2025 Downregulation of spermatogenesis-associated transcripts in the spermatozoa of idiopathic infertile men. Andrology 3 40346865
2008 Cellular pattern formation by SCRAMBLED, a leucine-rich repeat receptor-like kinase in Arabidopsis. Plant signaling & behavior 3 19704725
2025 Loss of Cep135 causes oligoasthenoteratozoospermia and male infertility in mice. Cellular and molecular life sciences : CMLS 2 40095067
2023 Molecular characterization of SPATA6 and association of its SNPs with testicular size in sheep. Theriogenology 2 38096624
2025 A high content clonogenic survival drug screening identifies maytansine as a potent radiosensitizer for meningiomas. Frontiers in immunology 1 40170861
2025 Evaluating the Role of Nutrient Competition in Debaryomyces hansenii Biocontrol Activity Against Spoilage Molds in the Meat Industry. Journal of fungi (Basel, Switzerland) 1 40278063
2025 A missense mutation in TCFL5 is associated with male infertility due to oligoasthenoteratozoospermia. Molecular genetics and genomics : MGG 1 40711600
2025 Genome-wide association study on dairy goat milk production traits using three models. Frontiers in genetics 1 40919429
2025 Unraveling the Role of Perivascular Macrophages in Alzheimer's Disease: Insights from the Crosstalk between Immunometabolism and Ferroptosis. Current neuropharmacology 1 40976895
2024 Energy and environmental assessment of solid recovered fuels valorisation: Waste-to-Chemicals options vs co-combustion in cement plants. Waste management (New York, N.Y.) 1 39418862
2018 [Advances in the studies of teratospermia-related genes]. Zhonghua nan ke xue = National journal of andrology 1 32212452
2007 [Study of the binding of nuclear proteins from Plasmodium berghei strains with different chloroquine sensitivity to oligonucleotides corresponding to regulatory elements of multidrug resistance (mdr1) gene]. Biomeditsinskaia khimiia 1 18078069
2025 Immunolocalization and proteomic analyses of IZUMO1 in porcine spermatozoa. Frontiers in cell and developmental biology 0 40469420
2025 Reproductive Dysfunction and Testicular Epigenetic Alterations in Male Rats with Experimental Amebiasis: Evaluation of SPATA6 Methylation and Therapeutic Outcomes. Acta parasitologica 0 41148541
2025 A splicing regulator, SR45, suppresses plant immunity by regulating salicylic acid pathway in Arabidopsis thaliana. Frontiers in plant science 0 41245457
2025 Discovery of a Pathogenic NME5 Variant Underlying Acephalic Spermatozoa Syndrome: Unraveling a Novel Genotype-Phenotype Association in Male Infertility. Clinical genetics 0 41499646