| 1999 |
Crystal structures of the Sm protein heterodimers D3B and D1D2 revealed that Sm proteins share a common fold: an N-terminal alpha-helix followed by a strongly bent five-stranded antiparallel beta-sheet. The D3B and D1D2 dimers superpose closely in their core regions, and the structures suggest that the seven Sm proteins (including SmD3) form a closed ring through which snRNA is threaded via the positively charged central hole. |
X-ray crystallography of recombinant Sm protein complexes |
Cell |
High |
10025403
|
| 1997 |
SMN (Survival of Motor Neurons), the spinal muscular atrophy disease gene product, directly interacts with multiple spliceosomal snRNP Sm core proteins including SmD3 (D1, D2, D3, B, and E). This interaction places SMN in a complex with snRNP Sm proteins and implicates SMN in snRNP biogenesis. |
Co-immunoprecipitation and direct binding assays (pull-down) between SMN/SIP1 and individual Sm proteins |
Cell |
High |
9323129
|
| 2001 |
The methylosome, a 20S complex containing the methyltransferase JBP1 (PRMT5) and pICln, symmetrically dimethylates arginine (sDMA) residues in the RG-rich C-terminal domains of SmD3 (and SmD1). Unmodified SmD3 associates with the methylosome via its RG domain, and after sDMA modification, SmD3 is transferred to the SMN complex for snRNP core particle assembly. A 6S intermediate complex containing pICln, SmD1, and SmD3 (but not JBP1) was also identified. |
Biochemical fractionation, co-immunoprecipitation, in vitro methyltransferase assay, mass spectrometry |
Molecular and cellular biology |
High |
11713266
|
| 2001 |
A complex containing PRMT5, pICln, and Sm proteins (including SmD3) catalyzes symmetrical dimethylarginine (sDMA) modification of SmD3 and SmD1. pICln binds the Sm fold of Sm proteins and inhibits spontaneous Sm core assembly onto U snRNA by preventing Sm-Sm interactions needed for ring formation, suggesting the pICln-PRMT5 complex regulates an early step in snRNP biogenesis. |
Co-immunoprecipitation, in vitro methyltransferase assay, Sm core assembly assay |
Current biology : CB |
High |
11747828
|
| 2002 |
Comprehensive mass spectrometry-based proteomic analysis of purified functional human spliceosomes identified SmD3 (SNRPD3) as a confirmed component of the spliceosomal machinery, establishing its presence in the intact spliceosome complex. |
Affinity purification of functional spliceosomes followed by nanoscale LC-MS/MS |
Nature |
High |
12226669
|
| 2002 |
Drosophila Sm D3 is encoded in the reverse orientation within the first intron of the Ornithine Decarboxylase Antizyme gene. P-element insertions in the 5'-UTR or promoter of SmD3 specifically reduce or abolish SmD3 expression, causing embryonic lethality (amorphic alleles) or larval lethality with overgrown imaginal discs, brain hemispheres, and hematopoietic organs (hypomorphic alleles). These phenotypes are rescued by an SmD3+ transgene, demonstrating that SmD3 loss specifically underlies the gutfeeling phenotype. |
P-element insertion mutagenesis, transgenic rescue, immunostaining, genetic complementation |
Genetics |
High |
12072471
|
| 2004 |
The symmetrical dimethylarginine (sDMA) post-translational modification on SmD3 is not required for snRNP assembly or nuclear transport. Mutating the modified arginine residues to leucines in SmD3 did not prevent its assembly into snRNPs or its nuclear import in transiently expressed SmD3 variants. |
Site-directed mutagenesis of SmD3 arginine residues, transfection, subcellular fractionation, and immunoprecipitation |
Biochemical and biophysical research communications |
Medium |
16236255
|
| 2004 |
SmD3 and SmD1 contain symmetrical dimethylarginine (sDMA) residues in their C-termini. Heavy methyl SILAC mass spectrometry confirmed sDMA as an in vivo modification on these Sm proteins, and the dimethylated arginine represents a major antigenic determinant of anti-Sm autoantibodies in SLE. A synthetic sDMA-containing SmD3 peptide (amino acids 108-122) was shown to be immunoreactive with a specific subset of anti-Sm antibodies. |
Heavy methyl SILAC (stable isotope labeling) combined with LC-MS/MS; ELISA with dimethylated and unmodified peptides |
Arthritis research & therapy / Nature methods |
High |
15642139 15782174
|
| 2012 |
Haploinsufficiency of SmD3 (SNRPD3) in Chinese hamster ovary cells reduces the levels of snRNAs U4 and U5, which in turn decreases snoRNA-containing intron lariat abundance and snoRNA expression, even though pre-mRNA splicing per se is maintained. This identifies SmD3 as a critical upstream regulator of intronic noncoding RNA (snoRNA) biogenesis and metabolic stress response pathways. |
Retroviral promoter trap mutagenesis to generate SmD3 haploinsufficient cells; RT-qPCR and northern blotting for snRNAs, snoRNAs, and intron lariats; splicing assays |
Molecular and cellular biology |
Medium |
22869524
|
| 2014 |
In yeast U1 snRNP, SmD3 residues Glu37 and Asp38 make direct contacts with Arg21 of the U1C subunit (Yhc1), fortifying the U1•5' splice site (5'SS) duplex complex. Mutations at these SmD3 residues synergize genetically with mud2Δ and bypass the essentiality of DEAD-box ATPase Prp28, consistent with destabilization of U1•5'SS interaction. Genetic interaction analysis also showed SmD3's role in pre-mRNA 5' splice site recognition within U1 snRNP. |
Mutational analysis guided by human U1 snRNP structure; synthetic lethality/sickness screens; prp28Δ bypass assay in yeast |
Nucleic acids research |
High |
24497193
|
| 2015 |
Mutagenesis of the RNA-binding triad of SmD3 (Ser-Asn-Arg) revealed built-in redundancy in the Sm ring: no single residue of the RNA-binding triad is individually essential, but simultaneous mutations of Asn or Arg in both SmD3 and SmB are lethal. SmD3 RNA-binding mutations are synthetically lethal with loss of U2 snRNP subunit Lea1, placing SmD3's RNA contacts in a functional relationship with U2 snRNP. C-terminal truncations of SmD3 are lethal without Mud2 or Lea1 and viable without Nam8/Mud1. SMD3-E35A specifically suppresses temperature sensitivity of lea1Δ. |
Yeast genetics: alanine-scanning mutagenesis, synthetic lethality analysis, double-mutant growth assays |
RNA (New York, N.Y.) |
High |
25897024
|
| 2019 |
In Drosophila, SmD3 is required for germline stem cell (GSC) niche maintenance and controls self-renewal and differentiation of GSCs in the testis. SmD3 physically interacts with ribosomal protein RpL18 (a large ribosomal subunit regulator) as identified by LC-MS/MS, and regulates both spliceosome and ribosome subunit expression levels via RpL18, revealing crosstalk between the spliceosome and ribosome. |
Genetic manipulation in Drosophila (loss-of-function), in vitro proliferation/apoptosis assays in S2 cells, LC-MS/MS interactome, western blotting |
FASEB journal |
Medium |
30921522
|
| 2021 |
CRISPRi knockdown of SNRPD3 in human A549 and U251 cells induces apoptosis (murine cells) or senescence/mitotic catastrophe depending on p53 status (human tumor cells), confirming that SNRPD3 is essential for cell viability. Overexpression of SNRPD3 rescues U251 cells from mitotic catastrophe induced by shRNA targeting SNRPD3, directly linking SNRPD3 expression level to cell survival outcome. |
CRISPRi knockdown, inducible shRNA expression, overexpression rescue, flow cytometry, cell viability assays |
Molecular therapy. Nucleic acids |
Medium |
34703654
|
| 2023 |
MYCN directly binds SNRPD3 protein and recruits PRMT5 into a trimeric complex, leading to increased symmetrical dimethylarginine methylation of SNRPD3. MYCN transcriptionally upregulates SNRPD3 expression, and the MYCN-SNRPD3 complex maintains balanced alternative splicing of cell cycle regulators (including BIRC5 and CDK10) required for neuroblastoma cell growth. Depletion of SNRPD3 in the presence of MYCN overexpression causes excessive differential splicing. PRMT5 inhibition (JNJ-64619178) reduces SNRPD3 methylation and cell viability in neuroblastoma cells with high SNRPD3/MYCN expression. |
Co-immunoprecipitation (MYCN-SNRPD3-PRMT5 complex), RNA-sequencing (alternative splicing analysis), shRNA knockdown, colony formation, in vivo tumorigenicity, PRMT5 inhibitor treatment |
Oncogene |
High |
38049564
|
| 2024 |
A cancer-associated point mutation in SNRPD3 (G96V, a pan-cancer hotspot in the Sm ring) confers resistance to hypoxia. RNA-seq of G96V mutant cells under hypoxia revealed numerous differentially spliced events, including skipping of exons in DNM1L mRNA (encoding DRP1). G96V mutant cells exhibited excessive mitochondrial fragmentation due to altered DRP1-mediated fission, and treatment with DRP1 inhibitor Mdivi-1 reversed hypoxia resistance in G96V mutant cells. |
Cancer mutation analysis, isogenic cell line engineering, RNA-seq, mitochondrial morphology imaging, DRP1 inhibitor (Mdivi-1) treatment, cell viability assays under hypoxia |
Biochemical and biophysical research communications |
Medium |
38241813
|
| 2026 |
SNRPD3 promotes endometrial cancer cell proliferation, migration, and invasion by regulating splicing of SREBF1 mRNA; silencing SNRPD3 causes intron retention in SREBF1. Depletion of SREBF1 abolishes the enhanced proliferative and lipid metabolic capacity of SNRPD3-overexpressing cells, placing SNRPD3 upstream of SREBF1 in a splicing-dependent oncogenic pathway. Antisense oligonucleotide (ASO)-mediated silencing of SNRPD3 suppresses tumor growth in patient-derived xenograft models. |
shRNA/siRNA knockdown, overexpression, RNA-seq (intron retention analysis), subcutaneous xenograft, PDX model, ASO treatment |
Biochemical and biophysical research communications |
Medium |
41924775
|
| 2024 |
PRMT5 inhibition and knockdown of the PRMT5 adapter pICln (CLNS1A) causes detention of SNRPD3 protein on chromatin along with genomically retained, incompletely processed polyadenylated transcripts (GRIPPs). Arginine methylation of snRNPs (including SNRPD3) by PRMT5 is critical for their homeostatic chromatin and RNA interactions, and is required for mRNA chromatin escape and subsequent nuclear export. |
PRMT5 inhibition and pICln knockdown; spike-in controlled fractionated transcriptomics; fractionated cell proteomics; inducible isogenic wildtype and arginine-mutant SNRPB (with implications for SNRPD3 co-fractionation) |
bioRxivpreprint |
Medium |
|