| 2023 |
Smc5/6 is a DNA loop-extruding motor: single-molecule imaging demonstrated that Smc5/6 extrudes DNA loops symmetrically upon ATP hydrolysis at ~1 kb/s in a force-dependent manner. Monomeric Smc5/6 unidirectionally translocates along DNA, while dimeric Smc5/6 extrudes loops. The Nse5/6 subcomplex acts as a negative regulator of loop extrusion by inhibiting Smc5/6 dimerization, thereby preventing loop-extrusion initiation but not ongoing loop extrusion. |
Single-molecule imaging, in vitro reconstitution |
Nature |
High |
37076626
|
| 2024 |
Smc5/6 associates with transcription-induced positively supercoiled DNA at cohesin-dependent loop boundaries. Single-molecule imaging showed that Smc5/6 dimers specifically recognize the tips of positively supercoiled DNA plectonemes and initiate loop extrusion to gather supercoiled DNA into large plectonemic loops. Hi-C analysis showed that Smc5/6 links chromosomal regions containing transcription-induced positive supercoiling in cis. |
Single-molecule imaging, ChIP-seq, Hi-C |
Molecular cell |
High |
38295804
|
| 2022 |
Cryo-EM structure (3.8 Å) of DNA-bound yeast Smc5/6 revealed a DNA clamp formed by Smc5, Smc6, Nse1, Nse3, and Nse4. The positively charged inner surface of the clamp contacts dsDNA in a nonsequence-specific manner. The Nse3 subunit secures DNA from above; the hook-shaped Nse4 kleisin forms a scaffold connecting DNA to all other subunits. Cross-linking MS identified multi-subunit conformational changes from DNA-free to DNA-bound state enabling DNA capture. |
Cryo-EM structure, cross-linking mass spectrometry, mutagenesis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
35648833
|
| 2016 |
HBx hijacks the cellular DDB1-CUL4 E3 ubiquitin ligase to target the Smc5/6 complex for ubiquitin-mediated proteasomal degradation, relieving Smc5/6-mediated transcriptional repression of extrachromosomal (cccDNA) templates. Smc5/6 associates directly with extrachromosomal DNA and the HBV genome. Silencing Smc5/6 enhances extrachromosomal reporter transcription and rescues HBx-deficient HBV replication. |
RNAi knockdown, reporter assays, Co-immunoprecipitation, substrate-trapping proteomics |
Nature |
High |
26983541 27626656
|
| 2007 |
The SMC5/6 complex localizes to ALT-associated PML bodies (APBs) in ALT cancer cells and is required for targeting telomeres to APBs. The MMS21 SUMO ligase subunit of SMC5/6 SUMOylates multiple telomere-binding proteins, including TRF1 and TRF2. Inhibition of TRF1 or TRF2 SUMOylation prevents APB formation. Depletion of SMC5/6 subunits by RNAi inhibits telomere HR, causing telomere shortening and senescence in ALT cells. |
RNAi, co-immunoprecipitation, in vitro SUMOylation assay, immunofluorescence |
Nature structural & molecular biology |
High |
17589526
|
| 2006 |
Human SMC5/6 complex is recruited to nuclease-induced DNA double-strand breaks and is required for recruitment of cohesin (SMC1/3) to DSBs. RNAi knockdown of SMC5/6 specifically decreases sister chromatid HR without affecting NHEJ, intra-chromatid HR, or extrachromosomal HR. |
RNAi, chromatin immunoprecipitation, gene targeting assays |
The EMBO journal |
High |
16810316
|
| 2009 |
Crystal structure of Mms21 (NSE2/Nse2) in complex with the Smc5 arm revealed two functional domains: an N-terminal half forming a helix bundle with a coiled-coil region of Smc5 (required for Smc5 binding), and a C-terminal SUMO ligase domain with a new type of RING E3 structure that confers specificity to SUMO E2-E3 interaction. The Mms21-Smc5 interface is required for cell growth and DNA damage resistance. |
X-ray crystallography, mutagenesis, in vitro SUMO ligase assay |
Molecular cell |
High |
19748359
|
| 2005 |
Nse2 (fission yeast SMC5/6 subunit) is a SUMO ligase: it sumoylates Smc6 and Nse3 in vitro in an Nse2-dependent manner, and autosumoylates itself. Mutations in the RING-finger-like motif (C195S/H197A) abolish Nse2-dependent sumoylation. Smc6 is sumoylated in vivo, with increased levels upon DNA damage, which is drastically reduced in nse2.SA cells. nse2.SA cells are sensitive to DNA-damaging agents, implicating Nse2 SUMO ligase activity in DNA damage responses. |
In vitro sumoylation assay, mutagenesis, in vivo sumoylation analysis, DNA damage sensitivity assays |
Molecular and cellular biology |
High |
15601841
|
| 2006 |
Nse4 is the kleisin component of the Smc5/6 complex, bridging the heads of Smc5 and Smc6. The C-terminal part of Nse4 interacts with the head domain of Smc5; specific mutations in a predicted winged helix motif of Nse4 destroy this interaction. Nse3, Nse5, and Nse6 also bridge the Smc5 and Smc6 heads at different sites. The Nse1-Nse3-Nse4 and Nse5-Nse6 subcomplexes bind to the Smc5-Smc6 heads domain at different sites. |
Co-immunoprecipitation, yeast two-hybrid, in vitro binding assays, structural predictions |
The Journal of biological chemistry |
Medium |
17005570
|
| 2005 |
Human and S. pombe Smc5 and Smc6 interact through their hinge domains. Temperature-sensitive mutations in Rad18 (Smc6) all map to the same conserved glycine in the hinge region, and this mutation abolishes hinge-hinge interaction between Smc6 and Smc5. Two subcomplexes were identified: Rad18-Spr18-Nse2 and Nse1-Nse3-Rad62. |
Protein purification, co-immunoprecipitation, mutagenesis, mass spectrometry |
Molecular and cellular biology |
Medium |
15601840
|
| 2009 |
The architecture of the budding yeast Smc5/6 complex shows Smc5 and Smc6 associating at their hinge regions; Nse1-Nse3-Nse4 form a subcomplex binding the Smc5 head and adjacent coiled-coil; Nse2 binds the middle of the Smc5 coiled-coil; Nse5-Nse6 form a heterodimer that binds the hinge regions of both Smc5 and Smc6. |
Yeast two-hybrid, in vitro binding assays with purified recombinant proteins |
The Journal of biological chemistry |
Medium |
19141609
|
| 2015 |
Purified Smc5/6 binds DNA through a mechanism requiring ATP hydrolysis and circular DNA. This promotes topoisomerase 2-dependent catenation of plasmids, suggesting Smc5/6 interconnects two DNA molecules via ATP-regulated topological entrapment. An Smc6 mutant defective in ATP binding fails to interact with DNA and chromosomes and causes cell death with DNA damage accumulation when overexpressed. |
In vitro DNA binding assay with purified complex, plasmid catenation assay, ATPase mutant analysis |
Cell reports |
Medium |
26299966
|
| 2020 |
Purified budding yeast Smc5/6 holocomplex exhibits DNA-dependent ATP hydrolysis, SUMO E3 ligase activity, and topological DNA binding with affinity for supercoiled and catenated DNA. Single-molecule assays showed that Smc5/6 locks DNA plectonemes and compacts DNA in an ATP-dependent manner. |
In vitro ATPase assay, SUMO E3 ligase assay, DNA binding assay, single-molecule imaging |
Molecular cell |
High |
33301732
|
| 2020 |
The human Smc5/6 complex recognizes unusual DNA configurations (non-B DNA) and uses ATP hydrolysis to compact DNA. Structural analyses revealed subunit interfaces responsible for functionality; mutations in these interfaces lead to chromosome breakage syndromes in humans. |
In vitro DNA compaction assay, structural analysis, mutagenesis |
Molecular cell |
Medium |
33301731
|
| 2021 |
The Nse5/6 sub-complex strongly inhibits Smc5/6 ATPase by preventing productive ATP binding. This inhibition is relieved by plasmid DNA but not by short linear DNA. Two binding sites for Nse5/6 on Smc5/6 were identified: one at the Smc5/6 arms and one at the heads (exerting inhibitory effects). Nse4/3/1 module detaches from the ATPase domains under ATP and DNA conditions. Cysteine cross-linking demonstrated Nse5/6 anchors the ATPase domains in a non-productive state destabilized by ATP and DNA. |
In vitro ATPase assay, crystal structure of Nse5/6, cross-linking mass spectrometry, cysteine cross-linking |
The EMBO journal |
High |
34191293
|
| 2021 |
Nse5/6 acts as a negative regulator of Smc5/6 ATPase activity by binding to the head-end of the complex to suppress ATP turnover. Only the six-protein holo-complex is capable of hydrolyzing ATP; ATPase activity is significantly increased by double-stranded DNA. ATPase stimulation requires functional ATP-binding pockets in both Smc5 and Smc6. |
In vitro ATPase assay with reconstituted Smc5/6 complexes, negative-stain electron microscopy |
Nucleic acids research |
High |
33849072
|
| 2021 |
Integrative structural study of yeast Smc5/6 by cryo-EM, cross-linking MS, and computational modeling revealed that Smc5 and Smc6 arms do not fold back (unlike cohesin/condensin arms). Instead, the long filamentous arm regions interact with Nse2 (SUMO ligase) and Nse5/Nse6 subcomplex. A 3.0-Å cryo-EM structure of Nse5/Nse6 revealed a clasped-hand topology and dimeric interface. Nse5/Nse6 uses SUMO-binding motifs to contribute to Nse2-mediated sumoylation. |
Cryo-EM, cross-linking mass spectrometry, computational modeling |
Proceedings of the National Academy of Sciences of the United States of America |
High |
33941673
|
| 2018 |
The Nse2/Mms21 SUMO E3 ligase activity within the Smc5/6 complex is directly stimulated by DNA binding. Stimulation requires the electrostatic interaction between DNA and a positively charged patch in the ARM domain of Smc5, which acts as a DNA sensor and promotes activation of Nse2 E3 activity. Disruption of the ARM-DNA interaction sensitizes cells to DNA damage. |
In vitro SUMO ligase assay, mutagenesis, DNA-binding assay |
The EMBO journal |
High |
29769404
|
| 2007 |
The Smc5-Smc6 complex and SUMO modification of Rad52 regulate recombinational repair at the rDNA locus. Recombinational repair of a DSB in rDNA involves transient relocalization of the lesion to an extranucleolar site. Nucleolar exclusion of Rad52 recombination foci requires Mre11 and Smc5-Smc6, and depends on Rad52 SUMO modification. Mutations abrogating these activities cause rDNA hyperrecombination and excision of extrachromosomal rDNA circles. |
Fluorescence microscopy of repair foci, genetic epistasis, sumoylation assays |
Nature cell biology |
High |
17643116
|
| 2006 |
The Smc5-Smc6 complex is recruited de novo to DNA DSBs and promotes repair by homologous recombination between sister chromatids. Loss of Smc5-Smc6 causes accumulation of gross chromosomal rearrangements and failure of error-free sister-chromatid recombination. |
Chromatin immunoprecipitation, genetic analysis, 2D gel electrophoresis |
Nature cell biology |
High |
16892052
|
| 2005 |
SMC5 and SMC6 are required for segregation of repetitive chromosomal regions. In conditional mutants, chromosome segregation of repetitive regions (rDNA, telomeres) is impaired, leading to X-shaped DNA (Holliday junctions) accumulation at rDNA loci. RAD52 deletion partially suppresses temperature sensitivity, indicating the complex prevents formation of sister chromatid junctions at repetitive loci. |
Conditional genetics, 2D gel electrophoresis, chromatin immunoprecipitation, genetic epistasis |
Nature cell biology |
High |
15793567
|
| 2009 |
The Smc5/6 complex directly binds to the DNA helicase Mph1 and modulates Mph1-dependent recombination. Deletion of MPH1 or its helicase mutations suppress multiple defects in Smc5/6 mutants, while MPH1 overexpression exacerbates them. Mph1 and its helicase activity are largely responsible for accumulation of deleterious recombination intermediates in Smc5/6 mutants, defining a function of Smc5/6 distinct from Sgs1. |
Co-immunoprecipitation (direct binding), genetic epistasis, 2D gel analysis |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
19995966
|
| 2016 |
Smc5/6 mediates SUMOylation of the Sgs1-Top3-Rmi1 (STR) complex. Sgs1 binds poly-SUMO chains and associates with the Smc5/6 SUMO E3 complex. Smc5/6-dependent sumoylation of Sgs1, Top3, and Rmi1 upon generation of recombination structures promotes STR inter-subunit interactions and accumulation at DNA repair centers, facilitating removal of recombination intermediates. |
Co-immunoprecipitation, in vivo SUMO modification assay, 2D gel electrophoresis, protein interaction assays |
Cell reports |
Medium |
27373152
|
| 2016 |
Smc5/6 recruits and activates Sgs1 through a two-step SUMOylation mechanism: (1) auto-SUMOylation of Smc5/6 subunits leads to recruitment of the STR complex via two SUMO-interacting motifs (SIMs) on Sgs1 that recognize SUMOylated Smc5/6; (2) Smc5/6-dependent SUMOylation of Sgs1 and Top3 is required for efficient STR function. Sgs1 SIM mutants show unprocessed HJs, increased crossovers, and impaired DNA end resection. |
Mutagenesis of SIMs, in vivo sumoylation assays, 2D gel electrophoresis, recombination assays |
Genes & development |
Medium |
27298337
|
| 2017 |
The Smc5/6 hinge forms a toroidal structure with distinctive interfaces ('molecular latch' and 'hub') absent from other SMC complexes. The Smc5/6 hinge binds preferentially to ssDNA; both latch and hub mutations reduce ssDNA binding and cause severe DNA damage sensitivity and reduced human cell viability. |
Crystal structure, mutagenesis, DNA-binding assay (ssDNA preference), cell viability assay |
Nature communications |
High |
28134253
|
| 2015 |
The essential functions of Smc5/6 segregate to G2/M phase. Smc5/6 is specifically required in G2/M for: (1) metabolism of DNA recombination structures triggered by endogenous replication stress, cooperating with dissolution activities; (2) replication through natural pausing sites in late-replicating regions via cooperation with the fork protection complex Tof1-Csm3. |
Cell-cycle-regulated alleles, genetic screens, 2D gel electrophoresis |
Molecular cell |
Medium |
26698660
|
| 2006 |
Chromosomal localization of budding yeast Smc5/6 complex occurs in three distinct, differentially regulated pathways: (1) association with centromeres and chromosome arms in unchallenged cells; (2) association with DNA breaks; (3) association with rDNA arrays. Localization to collapsed replication forks was also detected. Smc5/6 is needed during replication to prevent accumulation of branched chromosome structures. |
Chromatin immunoprecipitation (ChIP), 2D gel electrophoresis |
Molecular cell |
Medium |
16793545
|
| 2008 |
Localization of fission yeast Smc5/6 to centromeres during replication requires H3-K9 methylation (heterochromatin), while MMS-induced localization to subtelomeres requires Nse2 SUMO ligase activity but not H3-K9 methylation. Smc5/6 also loads at all genomic tDNAs in a manner requiring intact TFIIIC-binding sites. |
ChIP-on-chip, fluorescence microscopy, mutant analysis |
The EMBO journal |
Medium |
18923417
|
| 2015 |
The NSE1/NSE3/NSE4 sub-complex of SMC5/6 binds double-stranded DNA without sequence or structure preference. Mutations in key basic residues on the DNA-binding surface reduce DNA binding in vitro; introduction of these mutations in S. pombe leads to cell death or hypersensitivity to DNA damage. ChIP of the hypomorphic nse3 DNA-binding mutant shows reduced SMC5/6 chromatin association in vivo. |
In vitro DNA-binding assay, mutagenesis, chromatin immunoprecipitation |
Nucleic acids research |
Medium |
26446992
|
| 2010 |
Dissolution of DNA-mediated sister chromatid linkages before mitosis is an active process requiring the Smc5/6 complex and its associated Mms21 SUMO ligase. Failure to remove these linkages causes gross chromosome missegregation in anaphase. Smc5/6 can dissolve these linkages in metaphase-arrested cells, restoring chromosome resolution. |
Genetic analysis, microscopy of chromosome segregation, cell cycle analysis |
Nucleic acids research |
Medium |
20571088
|
| 2009 |
In fission yeast smc6 mutants following DNA damage in interphase, chromosome arm segregation fails due to aberrant persistence of cohesin normally removed by the Separase-independent pathway. This cohesin retention is independent of DNA damage per se. Separase overexpression bypasses the defect and restores cell viability. |
Genetic analysis, co-immunoprecipitation, cell viability assays, microscopy |
Molecular and cellular biology |
Medium |
19528228
|
| 2011 |
In budding yeast, Rtt107/Esc4 is required for recruitment of the SMC5/6 complex to DNA double-strand breaks. The interaction between Rtt107 and SMC5/6 is mediated through the N-terminal BRCT domains of Rtt107 and the Nse6 subunit of SMC5/6, and is independent of MMS-induced damage and Slx4. |
Co-immunoprecipitation, chromatin immunoprecipitation at DSBs, two-hybrid analysis |
The Journal of biological chemistry |
Medium |
21642432
|
| 2011 |
Smc5 binds strongly and specifically to single-stranded DNA (ssDNA) independent of Smc6 as a monomer. Smc5 ATPase activity is essential for its in vivo functions, and ATP regulates the association of Smc5 with DNA substrates in vitro. Smc5 binds efficiently to oligonucleotides consistent in size with ssDNA intermediates from DNA replication and repair. |
In vitro DNA-binding assay with purified Smc5, ATPase assay, mutagenesis |
Cell cycle (Georgetown, Tex.) |
Medium |
21293191
|
| 2022 |
The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA. SLF2 recruits the SMC5/6 complex to unintegrated lentiviruses. ATAC-seq showed that Vpr-mediated SLF2 depletion increases chromatin accessibility of unintegrated virus, demonstrating that SMC5/6 compacts viral chromatin to silence gene expression. |
CRISPR screen, ATAC-seq, knockdown/depletion experiments |
Cell host & microbe |
Medium |
33811831
|
| 2022 |
Epigenetic silencing of unintegrated HIV-1 proviruses by SMC5/6 requires SUMOylation: SMC5/6 binds to and SUMOylates unintegrated chromatinized HIV-1 DNA via NSMCE2 (SUMO E3 ligase). Inhibiting SUMOylation (by NSMCE2 point mutation or TAK-981 inhibitor) prevents silencing, enables transcription from unintegrated HIV-1 DNA, and suppresses establishment of HIV-1 latency. |
CRISPR/Cas9 screen, point mutagenesis, SUMOylation inhibitor, HIV-1 latency assay |
Nature microbiology |
High |
36376394
|
| 2022 |
Transcriptional silencing by human Smc5/6 is a three-step process: (1) entrapment of episomal DNA dependent on Smc5/6 ATPase activity and Nse4a (not Nse4b); (2) recruitment to PML nuclear bodies by SLF2 (human Nse6 ortholog); (3) silencing requiring Nse2 but not its SUMO ligase activity. Cohesin and condensin fail to bind or silence episomal DNA, indicating this is unique to Smc5/6. |
Functional assay with mutants, reporter assay, localization by immunofluorescence, domain swap experiments |
Nature structural & molecular biology |
High |
36097294
|
| 2010 |
Smc5/6 localizes to APBs in ALT cells and is required for localization to ND10/PML bodies in primary human hepatocytes. In hepatocytes, Smc5/6 localizes with Nuclear Domain 10 (ND10); depletion of ND10 structural components alters the nuclear distribution of Smc6 and induces HBV gene expression. |
Immunofluorescence co-localization, siRNA depletion, reporter assay |
PloS one |
Medium |
28095508
|
| 2022 |
EBV tegument protein BNRF1 targets SMC5/6 complexes for degradation via a ubiquitin-proteasome pathway dependent on calpain proteolysis and Cullin-7, to evade SMC5/6 restriction of viral replication compartments. In the absence of BNRF1, SMC5/6 associates with R-loop structures at the viral lytic origin of replication, interfering with replication compartment formation. |
Proteomics, CRISPR analysis, co-immunoprecipitation, viral replication assay |
Cell reports |
Medium |
35263599
|
| 2022 |
KSHV RTA protein degrades the SMC5/6 complex via the ubiquitin-proteasome system to antagonize SMC5/6-induced viral chromatin compaction. SMC5/6 binds to the KSHV genome and suppresses KSHV gene transcription by condensing viral chromatin into a repressive structure. |
ChIP, viral gene expression assay, protein degradation assay, chromatin compaction assay |
PLoS pathogens |
Medium |
35914008
|
| 2022 |
The human SIMC1 protein is a novel SMC5/6 subunit containing SUMO-interacting motifs (SIMs) and an Nse5-like domain. SIMC1 uses its SIMs and Nse5-like domain to localize SMC5/6 to polyomavirus replication centers at SUMO-rich PML nuclear bodies. SIMC1's Nse5-like domain binds SLF2 to form an anti-parallel helical dimer resembling yeast Nse5/6. |
Proteomics, co-immunoprecipitation, structural analysis, mutagenesis, localization assay |
eLife |
Medium |
36373674
|
| 2016 |
Biallelic missense mutations in NSMCE3 (a SMC5/6 complex subunit) disrupt interactions within the SMC5/6 complex, destabilizing it. Patient cells showed chromosome rearrangements, micronuclei, sensitivity to replication stress and DNA damage, and defective homologous recombination, establishing an autosomal recessive chromosome breakage syndrome. |
Whole exome sequencing, protein interaction assays, cell-based HR assay, chromosome analysis |
The Journal of clinical investigation |
Medium |
27427983
|
| 2022 |
Biallelic variants in SLF2 and SMC5 cause a chromosome instability syndrome (Atelís Syndrome) characterized by segmented and dicentric chromosomes with mosaic variegated hyperploidy. Patient-derived cells show elevated replication stress partly due to reduced ability to replicate through G-quadruplex DNA structures and loss of sister chromatid cohesion. |
Whole exome sequencing, cell-based replication stress assays, chromosome analysis, cohesion assay |
Nature communications |
Medium |
36333305
|
| 2009 |
RNAi ablation of SMC5 or MMS21 (but not SMC6) leads to premature sister chromatid separation before anaphase, activating the spindle assembly checkpoint and blocking mitotic progression. Mitotic SMC5 co-elutes with MMS21 in column fractions lacking SMC6, suggesting a mitotic SMC5-MMS21 sub-complex independent of SMC5/6. |
RNAi, immunoprecipitation, flow cytometry, live-cell imaging |
Cell cycle (Georgetown, Tex.) |
Medium |
19502785
|
| 2013 |
In human cells, Smc5/6 associates with chromatin during interphase but largely dissociates from chromosomes during mitotic chromosome condensation. Depletion of Smc5 and Smc6 causes aberrant mitotic chromosome phenotypes with abnormal distribution of topoisomerase IIα and condensins, and chromosome segregation errors. Smc5/6 is required for on-time progression of DNA replication and subsequent binding of topo IIα on replicated chromatids. |
Chromatin fractionation, immunofluorescence, live-cell imaging, premature chromosome condensation assay |
Molecular biology of the cell |
Medium |
24258023
|
| 2021 |
SMC5/6 depletion in human cells is essential for viability; inactivation is associated with spontaneous DNA damage, p53 activation, cell-cycle arrest, and senescence. Chromosome missegregation caused by SMC5/6 impairment requires impaired SMC5/6 function during the preceding S and G2 phases; SMC5/6 degradation immediately prior to mitotic entry has little impact on chromosome segregation fidelity. |
Auxin-inducible degron system for acute depletion, cell viability assay, live-cell imaging, flow cytometry |
Cell reports |
Medium |
32320646
|
| 2016 |
Smc5/6 is present at telomeres throughout the cell cycle. Its association with chromosome ends depends on Nse3 subunit. Nse3 interacts physically and genetically with Rap1-binding factors Rif2 and Sir4. Reduced telomere-associated Smc5/6 leads to defects in telomere clustering, dispersion of Sir4, and loss of transcriptional repression of subtelomeric genes and TERRA. |
Chromatin immunoprecipitation, co-immunoprecipitation, fluorescence microscopy, genetic analysis |
PLoS genetics |
Medium |
27564449
|
| 2018 |
PJA1 (a RING-H2 E3 ubiquitin ligase) interacts with the SMC5/6 complex and facilitates binding of the complex to viral and episomal DNAs in the cell nucleus. Treatment with topoisomerase inhibitors and topoisomerase knockdown relieve PJA1-mediated silencing of viral and extrachromosomal DNAs. |
Co-immunoprecipitation, reporter assay, RNAi, inhibitor treatment |
Journal of virology |
Low |
30185588
|
| 2016 |
NSMCE2 (NSE2/Mms21) depletion in human cells (U2OS) increases sensitivity to etoposide (topoisomerase II inhibitor) but not to ionizing radiation. Immunoprecipitation and mass spectrometry showed the SMC5/6 complex physically interacts with DNA Topoisomerase IIα (TOP2A), suggesting SMC5/6 resolves TOP2A-mediated DSB-repair intermediates during replication. |
CRISPR-Cas9 knockout, immunoprecipitation, mass spectrometry |
International journal of molecular sciences |
Low |
27792189
|
| 2021 |
SMC5/6 depletion in neural progenitor cells (NPCs) leads to DNA replication stress at late-replicating regions such as pericentromeric heterochromatin, causing chromosome missegregation, DNA bridges, and NPC apoptosis. Concomitant deletion of Trp53 or Chek2 rescues Smc5 cKO neurodevelopmental defects, placing SMC5/6 in a CHEK2-p53 DNA damage response pathway. |
Conditional knockout, epistasis with Trp53 and Chek2, DNA fiber assay, immunofluorescence |
eLife |
Medium |
33200984
|
| 2021 |
Single-molecule tracking in live fission yeast showed Smc5/6 is chromatin-associated in unchallenged cells. This constitutive chromatin association depends on Nse6 through at least two sub-pathways, one requiring the BRCT-domain protein Brc1. The Nse3 double-stranded DNA binding activity and the arginine fingers of both Smc5/6 ATPase sites are critical for chromatin association. Disrupting the ssDNA binding activity at the hinge region (without preventing chromatin association) leads to elevated gross chromosomal rearrangements during replication restart. |
Single-molecule live-cell tracking, genetic analysis with defined mutants |
eLife |
Medium |
33860765
|
| 2003 |
Fission yeast Smc5 was purified and Nse1 and Nse2 were identified by mass spectrometry as co-precipitating non-SMC subunits that interact with Smc5 in vivo as part of the Smc5-Smc6 complex. Both are essential proteins with DNA damage repair functions epistatic to Rhp51, placing them in the homologous recombination pathway. |
Protein purification, mass spectrometry, co-immunoprecipitation, genetic epistasis |
The Journal of biological chemistry |
Medium |
12966087
|
| 2018 |
In budding yeast, acute Smc5/6 depletion reveals a primary defect in replication of the rDNA array. This is linked to programmed replication fork barriers (RFBs) established by Fob1; Fob1 deletion improves rDNA replication in Smc5/6-depleted cells. Deletion of Mph1 helicase similarly reduces recombination structures at RFB regions, confirming Smc5/6 restrains Mph1-dependent recombination at protein-barrier-stalled forks. |
Auxin-inducible degron depletion, 2D gel electrophoresis, genetic epistasis |
PLoS genetics |
Medium |
29360860
|