Affinage

SMC4

Structural maintenance of chromosomes protein 4 · UniProt Q9NTJ3

Length
1288 aa
Mass
147.2 kDa
Annotated
2026-06-10
33 papers in source corpus 18 papers cited in narrative 21 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SMC4 is a core ATPase subunit of the condensin complex, an essential machine for mitotic chromosome condensation and sister chromatid resolution (PMID:10485849, PMID:11267866). It heterodimerizes with SMC2 through anti-parallel coiled-coil arms that are highly flexible and can adopt multiple interconverting architectures, with the head domains engaging both each other and the distal hinge (PMID:26904946); ATP binding drives head engagement coupled to hinge opening, and nucleotide cycling governs re-association of the non-SMC kleisin subunit with the SMC heads. In human cells SMC4 (hCAP-C) pairs with SMC2 (hCAP-E) and the non-SMC subunit CNAP1, residing in the interphase cytoplasm and loading onto chromosomes specifically during mitosis (PMID:10958694). Cell-cycle restriction of condensin activity is enforced at two levels: Cdc2/CDK1 phosphorylates the SMC4 ortholog at a single threonine to drive mitotic nuclear accumulation required for condensation (PMID:10485849), while APC/C- and proteasome-dependent degradation of SMC4 at mitotic exit limits its persistence (PMID:30719224). Loss of SMC4 produces failure of sister chromatid resolution, chromosome breakage, and apoptosis (PMID:11267866). Beyond chromosome architecture, SMC4 acts as a transcriptional co-activator and chromatin-linked regulator of inflammatory and metabolic programs: it recruits H4K5 acetyltransferase activity to the NEMO promoter to potentiate NF-κB/IRF3-driven innate immune responses (PMID:29803706), co-activates the glycolytic enzyme PGAM1 to sustain F-actin assembly and cytokinesis (PMID:37543034), and engages glycolytic machinery including GLUT1 to support glycolysis and mTOR/Rheb signaling (PMID:40278414). SMC4 transcription is driven by upstream factors FoxO1, ZNF131, and NFIA in diverse cancer contexts (PMID:38403332, PMID:38241815, PMID:40933894).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 1999 High

    Established that SMC4 is one of five essential subunits of a defined condensin complex, fixing its identity within a discrete chromosome-condensation machine rather than as an isolated factor.

    Evidence Complex purification, subunit microsequencing, and gene-disruption epistasis in fission yeast

    PMID:10485849

    Open questions at the time
    • Did not resolve the molecular geometry of the SMC4-SMC2 dimer
    • Mechanism by which condensin reshapes chromatin not defined
  2. 1999 High

    Showed how condensin activity is restricted to mitosis, answering when and how SMC4 becomes active by linking Cdc2 phosphorylation to nuclear import and condensation.

    Evidence In vitro Cdc2 kinase assay, in vivo phospho-mapping, GFP localization, and T19A mutagenesis in fission yeast

    PMID:10485849

    Open questions at the time
    • Whether equivalent phosphoregulation operates at the same residue in human SMC4 not established
    • Downstream effect of phosphorylation on ATPase or DNA engagement not defined
  3. 2000 High

    Demonstrated that the yeast condensin architecture is conserved in human cells, with SMC4 forming an SMC2/CNAP1-containing complex that loads onto chromosomes in a cell-cycle-dependent manner.

    Evidence Reciprocal Co-IP from HeLa extracts and immunofluorescence across the cell cycle

    PMID:10958694

    Open questions at the time
    • Did not define the trigger for interphase cytoplasmic retention versus mitotic chromosome loading
    • Functional consequences of human condensin loss not tested here
  4. 2001 High

    Distinguished SMC4's role in sister chromatid resolution from simple axis shortening, clarifying which aspect of chromosome organization depends on condensin.

    Evidence Loss-of-function gluon alleles with cytological mitotic chromosome analysis in Drosophila

    PMID:11267866

    Open questions at the time
    • Molecular basis for resolution failure not resolved
    • Did not address non-mitotic functions
  5. 2016 High

    Resolved the conformational behavior of the SMC2-SMC4 dimer, showing flexible coiled-coil arms and head-to-hinge contacts that frame a dynamic structural mechanism.

    Evidence High-speed AFM in liquid plus earlier cross-linking/MS modelling of the dimer

    PMID:25716199 PMID:26904946

    Open questions at the time
    • Functional meaning of individual conformations for DNA handling not established
    • Histone H2A/H4 contacts remain cross-link-level only
  6. 2019 Medium

    Added a second layer of cell-cycle control by showing SMC4 protein levels are limited by APC/C- and proteasome-dependent degradation, with an unexpected Mad2 requirement.

    Evidence Western blotting across the cell cycle, APC/C and MAD2 mutant epistasis, and proteasome inhibition in budding yeast

    PMID:30719224

    Open questions at the time
    • Degron sequence and direct ubiquitin ligase contact not mapped
    • Role of Mad2 in degradation mechanistically unexplained
  7. 2018 Medium

    Opened a non-canonical role for SMC4 as a chromatin co-activator, linking it to innate immune gene expression via H4K5ac at the NEMO promoter.

    Evidence Epigenetic-modifier screen, knockdown, ChIP for H4K5ac, cytokine ELISA, and an in vivo sepsis model

    PMID:29803706

    Open questions at the time
    • Which acetyltransferase SMC4 recruits not identified
    • Whether this role depends on condensin assembly unresolved
  8. 2023 Medium

    Connected SMC4 to metabolic and cytoskeletal control by establishing it as a PGAM1 co-activator whose loss disrupts cytokinesis and reprograms glycolysis toward histone-lactylation-driven chemoresistance.

    Evidence Knockdown, ChIP/reporter co-activation assays, F-actin staining, ploidy flow cytometry, metabolic flux, and lactylation analysis

    PMID:37543034

    Open questions at the time
    • Direct binding of SMC4 to the PGAM1 promoter versus indirect effect not fully separated
    • Relationship to canonical condensin function unclear
  9. 2025 Medium

    Extended SMC4's metabolic role to direct engagement of glycolytic machinery, identifying a GLUT1 interaction that supports glycolysis and mTOR/Rheb activation in cancer.

    Evidence IP-MS interactome, co-IP confirmation, CRISPR knockdown, glycolytic assays, and a murine metastasis model

    PMID:40278414

    Open questions at the time
    • Whether SMC4-GLUT1 binding is direct or scaffold-mediated not resolved
    • Stoichiometry and subcellular site of the interaction unknown
  10. 2025 Medium

    Defined upstream transcriptional control of SMC4 by FoxO1 (with METTL14-mediated m6A enhancement), ZNF131/ZBTB33, and NFIA across multiple cancer types.

    Evidence ChIP-seq/ChIP-qPCR, dual-luciferase reporters, m6A analysis, and overexpression rescue in cancer cell and xenograft models

    PMID:38241815 PMID:38403332 PMID:40933894

    Open questions at the time
    • Whether these regulators converge under common physiological conditions not established
    • Context dependence of each promoter interaction not cross-validated
  11. 2025 Medium

    Implicated SMC4 in tumor immune evasion through genomic-stability maintenance suppressing cGAS-STING interferon and STING-independent PD-L1 upregulation.

    Evidence Knockdown/overexpression lines, interferon and PD-L1 assays, CD8+ T cell co-culture, and an immunocompetent 4T1 model

    PMID:40976049

    Open questions at the time
    • Mechanism of STING-independent PD-L1 control not defined
    • Direct molecular targets of SMC4 in this axis unidentified

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SMC4's canonical condensin/ATPase activity mechanistically connects to its growing set of transcriptional, metabolic, and immune-modulatory functions remains unresolved.
  • No biochemical demonstration that non-condensin roles require SMC4 ATPase or SMC2 dimerization
  • Plk1 as a direct mitotic kinase for SMC4 remains a preprint-level claim without validated phosphorylation site
  • Whether SMC4 partners such as GLUT1, TREM-1, and E2F7 act through condensin or independent SMC4 pools is unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0140110 transcription regulator activity 2 GO:0140657 ATP-dependent activity 2
Localization
GO:0005634 nucleus 2 GO:0005694 chromosome 2 GO:0005829 cytosol 1
Pathway
R-HSA-1640170 Cell Cycle 3 R-HSA-168256 Immune System 2 R-HSA-4839726 Chromatin organization 2
Complex memberships
condensin (SMC2-SMC4 core)condensin Icondensin II

Evidence

Reading pass · 21 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 Fission yeast condensin SMC4 ortholog Cut3 is directly phosphorylated by Cdc2 kinase at T19 in vitro and in vivo (maximal in metaphase); this phosphorylation is required for nuclear accumulation of the condensin complex during mitosis, and an alanine substitution (T19A) blocks both nuclear localization and chromosome condensation. In vitro Cdc2 kinase assay, in vivo phosphorylation mapping, GFP localization of condensin subunits, alanine-substitution mutagenesis with temperature-sensitive suppression assay Genes & development High 10485849
1999 Fission yeast condensin is a five-member complex composed of two SMC subunits (Cut3/SMC4 and Cut14/SMC2) and three non-SMC subunits (Cnd1, Cnd2, Cnd3); all five subunits are essential for mitotic chromosome condensation, and loss of any non-SMC subunit phenocopies loss of the SMC subunits. Complex purification, microsequencing of subunits, gene disruption and phenotypic analysis Genes & development High 10485849
2000 Human SMC4 (hCAP-C) forms a heterodimeric complex with hCAP-E, and this complex co-immunoprecipitates a 155-kDa non-SMC subunit CNAP1 (homolog of Xenopus XCAP-D2), demonstrating the existence of a condensin complex in human cells; the complex is predominantly cytoplasmic in interphase and associates with mitotic chromosomes in a cell-cycle-specific manner. Co-immunoprecipitation from HeLa extracts, immunofluorescence/chromosome localization, sequence homology analysis Molecular and cellular biology High 10958694
2001 Drosophila SMC4 (encoded by the gluon locus) localizes to the axial chromosome core at metaphase and anaphase, and loss-of-function mutations cause failure of sister chromatid resolution (not simply failure of axis shortening), leading to chromosome segregation defects, chromosome breakage, and apoptosis. Genetic mutant analysis (hypomorphic/null gluon alleles), immunofluorescence of DmSMC4 during mitosis, cytological analysis of mitotic chromosome structure Current biology : CB High 11267866
2015 Cross-linking mass spectrometry combined with molecular modelling of the chicken condensin SMC2/SMC4 dimer revealed that the two subunits' anti-parallel coiled-coils can adopt a closely apposed configuration, and that both histone H2A and H4 may contact condensin in situ on mitotic chromosomes. Amino acid-selective chemical cross-linking, mass spectrometry, homology-based molecular modelling Open biology Medium 25716199
2016 AFM imaging of S. cerevisiae Smc2-Smc4 dimers showed that the coiled-coil arms are highly flexible (persistence length ~4 nm), can adopt multiple architectures interconverting over time, and that the SMC head domains engage not only each other but also the hinge domain at the opposite end of the ~45-nm coiled coil. High-speed atomic force microscopy (AFM) in liquid Cell reports High 26904946
2018 SMC4 (Smc4) promotes inflammatory innate immune responses by recruiting H4K5 acetyltransferase activity to the NEMO promoter, increasing H4K5 acetylation and thereby enhancing NEMO transcription; elevated NEMO then potentiates NF-κB and IRF3 activation. Smc4 knockdown in macrophages reduced TLR/virus-triggered IL-6, TNF-α, and IFN-β production, and mice with Smc4 knockdown were less susceptible to sepsis. High-throughput epigenetic modifier screen, siRNA/shRNA knockdown, ChIP for H4K5ac at NEMO promoter, cytokine measurement by ELISA, in vivo sepsis model Journal of autoimmunity Medium 29803706
2019 Condensin core subunits Smc2 and Smc4 in budding yeast are regulated at the level of protein stability in a cell-cycle-dependent manner, peaking at mitosis and falling in interphase; Smc4 degradation at mitotic exit is dependent on the APC/C and mediated by the proteasome. Unexpectedly, the spindle checkpoint protein Mad2 is required for mitotic Smc4 degradation. Overproduction of Smc4 delays decondensation but has limited ability to promote premature condensation. Protein abundance western blotting across cell cycle, APC/C mutant epistasis, proteasome inhibitor treatment, MAD2 deletion analysis, Smc4 overexpression phenotypic analysis Oncotarget Medium 30719224
2023 SMC4 acts as a transcriptional co-activator of PGAM1; SMC4 attenuation suppresses PGAM1 expression, and coordinated loss of both SMC4 and PGAM1 disrupts F-actin assembly, causing cytokinesis failure and polyploidy. Additionally, SMC4 attenuation upregulates three glycolysis investment-phase enzymes increasing lactate, which drives histone lactylation-mediated ABC transporter upregulation, rendering cells chemotherapy-insensitive (diapause-like state). SMC4 knockdown experiments, reporter/ChIP assays for PGAM1 transcription co-activation, F-actin staining, flow cytometry for ploidy, metabolic flux assays, histone lactylation analysis Cell metabolism Medium 37543034
2020 In Plasmodium, SMC2 and SMC4 core subunits localize to centromeres during early schizogony (confirmed by NDC80 colocalization and ChIP-seq) without forming condensin I or II complexes, but in mature schizonts and male gametogenesis they distribute diffusely on chromosomes and form both condensin I and condensin II complexes. Fluorescence imaging with NDC80 marker, ChIP-seq for centromere localization, immunoprecipitation to detect condensin I/II complex formation, conditional knockdown Cell reports High 32049018
2025 SMC4 interacts with GLUT1 (encoded by Slc2a1) as revealed by IP-MS, and this interaction is confirmed by co-IP; SMC4 knockdown inhibits glycolysis rate, ATP production, and mTOR/Rheb activation, reducing prostate cancer cell proliferation and lung metastasis in vivo. IP-MS (interactome), co-immunoprecipitation, CRISPR/Cas9 SMC4 knockdown, glycolytic rate assay, RNA-seq KEGG pathway analysis, murine lung metastasis model Advanced science Medium 40278414
2025 SMC4 maintains genomic stability to suppress cGAS-STING-mediated type I interferon production in triple-negative breast cancer cells, and independently upregulates PD-L1 expression through a STING-independent mechanism, enabling immune evasion from CD8+ T cells. SMC4 knockdown/overexpression cell lines, western blot/RT-qPCR/ELISA for IFN and PD-L1, molecular docking, immunoprecipitation, CD8+ T cell co-culture assays, in vivo 4T1 immunocompetent murine model International immunopharmacology Medium 40976049
2024 FoxO1 promotes SMC4 transcription by binding to the SMC4 promoter at the -1400/-1390 bp region (confirmed by ChIP-seq), and also transcriptionally activates METTL14, which increases m6A methylation on SMC4 mRNA coding sequence, enhancing SMC4 mRNA abundance in ovarian cancer cells. ChIP-seq, dual-luciferase reporter assay, FoxO1 knockdown, METTL14 knockdown, m6A methylation analysis, in vitro and in vivo proliferation assays Cancer science Medium 38403332
2024 ZNF131 transcriptionally activates SMC4 expression in hepatocellular carcinoma by binding the SMC4 promoter through interaction with ZBTB33 (ChIP-qPCR and dual-luciferase reporter); enforced SMC4 overexpression partially rescues the tumor-suppressive effects of ZNF131 knockdown. ChIP-qPCR, dual-luciferase reporter assay, ZNF131 knockdown, SMC4 overexpression rescue experiment, xenograft tumor models Biochemical and biophysical research communications Medium 38241815
2025 SMC4 promotes myeloma cell growth by epigenetically enhancing IFI16-STING signaling, leading to increased pro-inflammatory cytokine production that creates a favorable microenvironment; pharmacological inhibition of the IFI16-STING pathway abrogates the oncogenic effects of SMC4. SMC4 depletion (proliferation and clonogenicity assays), epigenetic pathway analysis, IFI16/STING pathway inhibition experiments Apoptosis Low 41793503
2025 SMC4 in cervical cancer upregulates SMAD3 and activates NF-κB signaling, promoting PD-L1 expression; SMC4 knockdown under ionizing radiation impairs DNA damage repair, reduces S-phase cells, and sensitizes cells to radiation. SMC4 knockdown, immunofluorescence for DNA damage markers, cell-cycle analysis, colony formation under ionizing radiation, western blot for SMAD3/NF-κB/PD-L1 Journal of translational medicine Low 41803949
2025 NFIA directly binds two motifs in the SMC4 promoter (-1379 bp and -354 bp) to drive SMC4 transcription in glioma, as confirmed by dual-luciferase reporter and ChIP assays; SMC4 in turn promotes TGF-β/SMAD signaling (upregulating p-SMAD2/3, N-cadherin, SNAI1, ZEB1) and aerobic glycolysis via LDHA upregulation. ChIP assay, dual-luciferase reporter, SMC4 knockdown/overexpression, LDHA rescue experiments, ECAR/OCR metabolic assays, in vivo xenograft and metastasis models Frontiers in oncology Medium 40933894
2025 SMC4 is identified as a potential substrate of Polo-like kinase 1 (Plk1) in mitosis; Plk1 inhibition leads to downregulation of nascent transcription and reduced chromosomal accessibility, with SMC4 as a common subunit of condensin I and II implicated in mediating these effects. 5-EU labeling of nascent RNA, Plk1 inhibitor treatment, chromatin accessibility profiling (ATAC-seq implied), substrate identification (method not fully specified in abstract) bioRxivpreprint Low
2025 AFM imaging of yeast condensin revealed that head engagement upon ATP binding is coupled to hinge opening in the Smc2/Smc4 heterodimer, and that after ADP release the N-terminal region of the non-SMC subunit Brn1 re-associates with the Smc2 head domain. Solution AFM imaging with varying nucleotides (AMP-PNP, ATPγS, ADP), coarse-grained molecular dynamics simulations, flexible molecular fitting bioRxivpreprint Medium
2026 Tumor cell-derived exosomal E2F7 is transferred to macrophages where it binds SMC4 to induce M2-like macrophage polarization, promoting an immunosuppressive tumor microenvironment in colorectal cancer. Exosome isolation by ultracentrifugation, co-immunoprecipitation of E2F7 and SMC4, in vitro macrophage polarization assay, in vivo CRC mouse model International immunopharmacology Low 42119232
2022 TREM-1 interacts with SMC4 in cardiomyocytes (identified by co-immunoprecipitation); inhibition of either TREM-1 or SMC4 prevented NLRP3 inflammasome upregulation and decreased Gasdermin-D, IL-1β, and caspase-1 cleavage, indicating SMC4 functions downstream of TREM-1 in the pyroptosis pathway in sepsis. Co-immunoprecipitation, SMC4 siRNA knockdown, TREM-1 inhibitor (LR12), NLRP3 inflammasome activation assay, in vivo cecal ligation and puncture model The FEBS journal Low 36181338

Source papers

Stage 0 corpus · 33 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 Fission yeast condensin complex: essential roles of non-SMC subunits for condensation and Cdc2 phosphorylation of Cut3/SMC4. Genes & development 221 10485849
2001 A role for Drosophila SMC4 in the resolution of sister chromatids in mitosis. Current biology : CB 159 11267866
2000 A human condensin complex containing hCAP-C-hCAP-E and CNAP1, a homolog of Xenopus XCAP-D2, colocalizes with phosphorylated histone H3 during the early stage of mitotic chromosome condensation. Molecular and cellular biology 102 10958694
2023 The diapause-like colorectal cancer cells induced by SMC4 attenuation are characterized by low proliferation and chemotherapy insensitivity. Cell metabolism 86 37543034
2016 Condensin Smc2-Smc4 Dimers Are Flexible and Dynamic. Cell reports 71 26904946
2017 Overexpression of SMC4 activates TGFβ/Smad signaling and promotes aggressive phenotype in glioma cells. Oncogenesis 62 28287612
2014 A novel miR-219-SMC4-JAK2/Stat3 regulatory pathway in human hepatocellular carcinoma. Journal of experimental & clinical cancer research : CR 61 24980149
2016 SMC4, which is essentially involved in lung development, is associated with lung adenocarcinoma progression. Scientific reports 52 27687868
2015 Three-dimensional topology of the SMC2/SMC4 subcomplex from chicken condensin I revealed by cross-linking and molecular modelling. Open biology 45 25716199
2020 Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution. Nature biotechnology 38 32839564
2020 Plasmodium Condensin Core Subunits SMC2/SMC4 Mediate Atypical Mitosis and Are Essential for Parasite Proliferation and Transmission. Cell reports 29 32049018
2018 Condensin Smc4 promotes inflammatory innate immune response by epigenetically enhancing NEMO transcription. Journal of autoimmunity 27 29803706
2020 The Long Non-Coding RNA-RoR Promotes the Tumorigenesis of Human Colorectal Cancer by Targeting miR-6833-3p Through SMC4. OncoTargets and therapy 24 32273727
2022 TREM-1 induces pyroptosis in cardiomyocytes by activating NLRP3 inflammasome through the SMC4/NEMO pathway. The FEBS journal 20 36181338
2019 HIF-1-miR-219-SMC4 Regulatory Pathway Promoting Proliferation and Migration of HCC under Hypoxic Condition. BioMed research international 20 31828143
2021 MiR-433-3p restrains the proliferation, migration and invasion of glioma cells via targeting SMC4. Brain research 17 34147470
2019 Cell cycle regulation of condensin Smc4. Oncotarget 16 30719224
2024 FoxO1 promotes ovarian cancer by increasing transcription and METTL14-mediated m6A modification of SMC4. Cancer science 12 38403332
2021 SMC4 knockdown inhibits malignant biological behaviors of endometrial cancer cells by regulation of FoxO1 activity. Archives of biochemistry and biophysics 12 34506757
2021 Changes of EGFR and SMC4 expressions in triple-negative breast cancer and their early diagnostic value. Gland surgery 10 33842255
2020 The condensin subunits SMC2 and SMC4 interact for correct condensation and segregation of mitotic maize chromosomes. The Plant journal : for cell and molecular biology 10 31816133
2022 SMC4 enhances the chemoresistance of hepatoma cells by promoting autophagy. Annals of translational medicine 9 36660610
2024 ZNF131 facilitates the growth of hepatocellular carcinoma by acting as a transcriptional activator of SMC4 expression. Biochemical and biophysical research communications 5 38241815
2025 SMC4 Promotes Prostate Cancer Cell Proliferation and Metastasis via the Rheb/mTOR Pathway. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 3 40278414
2024 STAP-2 facilitates insulin signaling through binding to CAP/c-Cbl and regulates adipocyte differentiation. Scientific reports 3 38461189
2025 SMC4 promotes immune evasion by inhibiting endogenous interferon signaling and upregulating PD-L1 expression in triple negative breast cancer. International immunopharmacology 2 40976049
2025 USP39/SMC4 promotes hepatoma cell proliferation and 5-FU resistance. Scientific reports 1 40087331
2011 [Analysis for susceptibility of breast cancer due to gene SMC4L1 based on a multi-criteria evaluation model]. Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi 1 21774228
2026 Superenhancer-driven SMC4 promotes myeloma growth by epigenetically enhancing IFI16-dependent STING signaling. Apoptosis : an international journal on programmed cell death 0 41793503
2026 SMC4/SMAD3/NF-κB axis drives cervical cancer progression and radioresistance via DNA damage repair and immune modulation. Journal of translational medicine 0 41803949
2026 Tumor cell-derived exosomal E2F7 promotes colorectal cancer progression by interacting with SMC4 and induced macrophage M2 polarization. International immunopharmacology 0 42119232
2025 RETRACTION: HIF-1-miR-219-SMC4 Regulatory Pathway Promoting Proliferation and Migration of HCC under Hypoxic Condition. BioMed research international 0 40538835
2025 NFIA-dependent upregulation of SMC4 promotes metastasis and metabolic reprogramming in glioma. Frontiers in oncology 0 40933894

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