| 2007 |
RAD51AP1 binds both dsDNA and D-loop structures and, only when able to interact with RAD51, greatly stimulates the RAD51-mediated D-loop reaction. RAD51AP1 functions at a step subsequent to assembly of the RAD51-ssDNA nucleoprotein filament. RAD51AP1 is epistatic to the HR protein XRCC3. |
In vitro D-loop assay with purified RAD51AP1, EMSA for DNA binding, RNAi knockdown with HR repair assay and chromosomal break analysis, epistasis analysis with XRCC3 |
Molecular cell |
High |
17996711
|
| 2007 |
RAD51AP1 is a structure-specific DNA binding protein with selective affinity for branched-DNA structures (obligatory intermediates during joint molecule formation) and stimulates RAD51-mediated joint molecule formation through the combination of structure-specific DNA binding and direct physical contact with RAD51. |
In vitro joint molecule formation assay, DNA binding assays (EMSA) with branched vs. linear substrates, Co-IP/physical interaction mapping, cellular DNA damage sensitivity assays |
Molecular cell |
High |
17996710
|
| 2011 |
RAD51AP1 physically associates with the meiosis-specific recombinase DMC1 and stimulates the DMC1-mediated D-loop reaction by enhancing DMC1 presynaptic filament capacity to capture duplex-DNA and assemble the synaptic complex. Functional cooperation requires complex formation between DMC1 and RAD51AP1, and distinct epitopes in RAD51AP1 mediate interactions with RAD51 and DMC1. RAD51AP1 foci colocalize with a subset of DMC1 foci in mouse spermatocytes. |
In vitro D-loop assay with purified DMC1 and RAD51AP1, synaptic complex assembly assay, Co-IP, immunofluorescence in mouse spermatocytes |
Proceedings of the National Academy of Sciences of the United States of America |
High |
21307306
|
| 2011 |
A highly conserved WVPP motif in RAD51AP1 is critical for DMC1 interaction but dispensable for RAD51 association, demonstrating that RAD51AP1 uses distinct epitopes to interact with RAD51 versus DMC1. This WVPP motif is reminiscent of the FVPP motif in BRCA2 that mediates DMC1 interaction. |
Series of truncation and point mutations in RAD51AP1 analyzed by Co-IP and interaction assays |
The Journal of biological chemistry |
High |
21903585
|
| 2012 |
RAD51AP1 harbors two distinct DNA binding domains that are both required for maximal protein activity under physiological conditions; mutant variants impaired in either or both DNA binding domains are non-functional in cells. |
Domain mapping by truncation and point mutagenesis, EMSA, cellular complementation assays |
The Journal of biological chemistry |
High |
22375013
|
| 2006 |
RAD51AP1/PIR51 and RAD51AP2 use the same conserved C-terminal structural motif (~57 residues in RAD51AP2, mapped to 40 aa in RAD51AP1) for RAD51 binding. Point mutations in this motif abolish RAD51 interaction. |
Yeast two-hybrid, truncation and point mutation analysis in HEK293 cells, Co-IP |
Nucleic acids research |
Medium |
16990250
|
| 2016 |
UAF1 binds DNA and forms a dimeric complex with RAD51AP1 through SUMO-like domains in UAF1 and a SUMO-interacting motif (SIM) in RAD51AP1, and a trimeric complex with RAD51 through RAD51AP1. The RAD51AP1-UAF1 complex cooperates with RAD51 to assemble the synaptic complex and enhances RAD51-mediated homologous DNA pairing in a manner dependent on RAD51AP1 but independent of USP1. |
In vitro D-loop/synaptic complex assay with purified proteins, Co-IP, domain interaction mapping with SUMO-SIM mutations, cellular HR assay |
Cell reports |
High |
27239033
|
| 2016 |
USP1-UAF1 complex interacts with RAD51AP1 via UAF1, which mediates the interaction; depletion of USP1 or UAF1 reduces RAD51AP1 stability. A UAF1 interaction-deficient mutant of RAD51AP1 causes persistent RAD51 foci following DNA damage, indicating RAD51AP1-UAF1 regulates a later step in HR repair. |
Proteomic pulldown of UAF1-interacting proteins, Co-IP, protein stability assays, RAD51 foci analysis after DNA damage, chromosomal aberration assay |
Cell cycle (Georgetown, Tex.) |
Medium |
27463890
|
| 2019 |
Efficient FANCD2 deubiquitination by the USP1-UAF1 complex requires DNA and DNA binding by UAF1. The DNA binding activity of UAF1-associated RAD51AP1 can substitute for that of UAF1 in FANCD2 deubiquitination in a reconstituted biochemical system. DNA binding by UAF1 and RAD51AP1 is important for FANCD2 deubiquitination in cells. |
Reconstituted biochemical deubiquitination assay with purified USP1-UAF1-RAD51AP1 and FANCD2, cellular deubiquitination assay with separation-of-function mutants |
Nature communications |
High |
31253762
|
| 2019 |
RAD51AP1 is required for both RAD51-dependent HR and RAD52-POLD3-dependent break-induced DNA synthesis at ALT telomeres. RAD51AP1 KO in ALT+ cells causes generational telomere shortening, telomere dysfunction, and cytosolic telomeric DNA that activates cGAS. RAD51AP1 protein levels are elevated in ALT+ cells due to MMS21-associated SUMOylation; mutation of a single SUMO-targeted lysine residue perturbs telomere dynamics. |
RAD51AP1 KO in ALT+ cancer cells, telomere FISH, cGAS activation assay, autophagy assays, SUMOylation assay with MMS21, SUMO-site mutagenesis |
Molecular cell |
High |
31400850
|
| 2014 |
RAD51AP1 deficiency in vertebrate cells impairs DNA replication fork progression and causes increased replication origin firing. In RAD51AP1-deficient cells, resolution of DNA damage-induced RAD51 foci is greatly slowed while their formation is not impaired, placing RAD51AP1 function after RAD51 filament assembly. |
Targeted RAD51AP1 gene inactivation in chicken DT40 cells, DNA fiber assay for replication fork speed, RAD51 foci kinetics by immunofluorescence, complementation with human/chicken RAD51AP1 |
DNA repair |
High |
25288561
|
| 2021 |
RAD51AP1 binds to nucleosome core particles (NCPs) through a C-terminal region including its DNA-binding domain, and can promote duplex DNA capture and joint-molecule formation with chromatinized template DNA in vitro, suggesting RAD51AP1 anchors the DNA template through nucleosome affinity to the RAD51-ssDNA filament. |
In vitro binding assays (EMSA, pulldown) with purified NCPs and histone octamers, in vitro D-loop/joint molecule assay with chromatinized DNA, domain mapping by truncation |
The Journal of biological chemistry |
High |
34058198
|
| 2022 |
RAD51AP1 interacts with TERRA RNA and uses it to generate D-loop and R-loop HR intermediates at telomeres. RAD51AP1 depletion reduces R-loop formation at telomere DNA breaks. RAD51AP1-mediated TERRA R-loop homeostasis suppresses TERRA transcription and prevents transcription-replication collisions during ALT-HDR. Both TERRA binding and this chromatin-directed function require RAD51AP1's intrinsic SUMO-SIM regulatory axis. |
TERRA R-loop assays in vitro and at telomeres, RAD51AP1 KD with R-loop measurement (S9.6 antibody), proteomics of RAD51AP1-associated proteins, SUMO-SIM mutant analysis |
Molecular cell |
High |
36265488
|
| 2022 |
TERRA forms R-loops in vitro and at telomeres in a RAD51AP1-dependent manner. RAD51AP1-assembled TERRA R-loops generate G-quadruplexes (G4s) at telomeres, which persist after R-loop resolution and enable D-loop formation without RAD52, orchestrating an R-to-D-loop switch that promotes break-induced replication in the RAD52-independent ALT pathway. |
In vitro R-loop formation assay with purified TERRA and RAD51AP1, telomeric R-loop quantification in RAD51AP1-dependent knockdown cells, G4 detection, D-loop assay in RAD52 KO cells |
Molecular cell |
High |
36265486
|
| 2022 |
RAD51AP1 and RAD54L define two distinct sub-pathways downstream of RAD51 in HR; simultaneous deletion of RAD51AP1 and RAD54L shows synthetic sensitivity to PARP inhibitor (olaparib), mitomycin C, and hydroxyurea, establishing that the two proteins underpin non-redundant HR routes. |
Double KO of RAD51AP1 and RAD54L in human cancer cell lines, clonogenic survival with olaparib, MMC, hydroxyurea; comparison with RAD54B single KO |
Frontiers in cell and developmental biology |
Medium |
35652094
|
| 2024 |
RAD51AP1 associates with pre-rRNA through both its N-terminus and C-terminus. Pre-rRNA colocalizes with RAD51AP1 at double-strand breaks and facilitates RAD51AP1 recruitment to DSBs. RAD51AP1 forms liquid-liquid phase separation in the presence of pre-rRNA in vitro, which may underlie RAD51AP1 foci formation. |
RNA immunoprecipitation, colocalization at DSBs by imaging, RNA polymerase I inhibitor treatment, in vitro phase separation assay with purified RAD51AP1 and pre-rRNA |
The Journal of biological chemistry |
Medium |
38403248
|
| 2025 |
RAD51AP1 possesses at least three RAD51-binding sites that span two adjacent RAD51 molecules. RAD51AP1 stabilizes the RAD51 N-terminal domain and protomer interface in filaments, promotes RAD51-ssDNA filament nucleation and stabilization, and stimulates strand exchange. Structural data show RAD51AP1 binding induces conformational changes promoting RAD51 DNA association and oligomerization. RAD51-ssDNA filaments expand upon ATP hydrolysis to ADP, explaining reduced RAD51-DNA binding in the ADP state. |
Cryo-EM structures of RAD51-ssDNA filaments with and without RAD51AP1 in Mg2+-ATP and Mg2+-ADP states, biochemical strand exchange assays, filament stabilization assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
41337480
|
| 2025 |
RAD51AP1 activity in HDR is regulated by CDK2-mediated phosphorylation at S277 and S282. A phospho-deficient S277/282A mutant more avidly binds ssDNA, dsDNA, and nucleosome core particles and is more proficient in D-loop stimulation in vitro, but fails to rescue RAD51AP1 deficiency in cellular toxicity and DNA replication assays. A phosphomimetic S277/282D mutant fully rescues RAD51AP1 deficiency in cells, suggesting phosphorylation ensures dynamic RAD51AP1 engagement across consecutive HDR steps. |
Site-directed mutagenesis (S277A, S282A, S277/282D), in vitro D-loop assay, EMSA with ssDNA/dsDNA/NCP, cellular toxicity and DNA replication assays, CDK2 phosphorylation identification |
The Journal of biological chemistry |
High |
41534830
|
| 2025 |
RAD51AP1 is required for TERRA R-loop formation in telomerase-expressing cells; both RAD51 and RAD51AP1 contribute non-redundant functions to TERRA R-loop formation. TERRA R-loops interfere with semiconservative DNA replication and promote break-induced replication for telomere maintenance. |
TERRA overexpression in telomerase+ cells, RAD51AP1 depletion, R-loop measurement, DNA replication interference assay, BIR assay |
bioRxivpreprint |
Medium |
bio_10.1101_2025.01.09.632133
|
| 2024 |
E2F1 transcription factor drives RAD51AP1 expression in EGFRvIII-positive glioblastoma cells in response to TMZ treatment; RAD51AP1 promotes formation of the RAD51-UAF1 complex to activate homologous recombination and thereby confers TMZ resistance. H3K27ac and SOX9 together induce RAD51AP1 transcription in EGFRvIII cells. |
CRISPR/Cas9 synthetic lethal screen, ChIP-seq and ChIP-PCR for H3K27ac and SOX9 at RAD51AP1 promoter, RAD51AP1 KD and OE with HR and drug sensitivity assays |
Chinese medical journal |
Medium |
40211735
|