| 2011 |
PTPIP51 (outer mitochondrial membrane protein) directly interacts with the ER-resident protein VAPB, and this interaction is required for normal mitochondrial Ca2+ uptake following release from ER stores. VAPB is a MAM (mitochondria-associated membrane) protein, and loss of either VAPB or PTPIP51 perturbs Ca2+ homeostasis. The ALS-linked VAPBP56S mutant shows altered binding to PTPIP51 and dysregulated Ca2+ uptake. |
Co-immunoprecipitation, siRNA knockdown, mitochondrial Ca2+ uptake assays, subcellular fractionation (MAM isolation) |
Human molecular genetics |
High |
22131369
|
| 2014 |
VAPB-PTPIP51 interaction tethers ER to mitochondria. TDP-43 (ALS/FTD-linked) disrupts this interaction and ER-mitochondria associations, perturbing Ca2+ homeostasis. TDP-43 overexpression activates GSK-3β, and GSK-3β regulates the VAPB-PTPIP51 interaction, placing GSK-3β as an upstream negative regulator of the tether. |
Co-immunoprecipitation, electron microscopy (ER-mitochondria contact quantification), Ca2+ imaging, GSK-3β kinase activity assays, siRNA |
Nature communications |
High |
24893131
|
| 2016 |
ALS/FTD-associated FUS disrupts the VAPB-PTPIP51 interaction and ER-mitochondria associations, leading to impaired mitochondrial Ca2+ uptake and reduced mitochondrial ATP production. FUS activates GSK-3β, which mediates these disruptions, consistent with a shared GSK-3β-dependent mechanism for ALS/FTD insults on the VAPB-PTPIP51 tether. |
Co-immunoprecipitation, electron microscopy, mitochondrial Ca2+ and ATP assays, GSK-3β inhibitor experiments |
EMBO reports |
High |
27418313
|
| 2017 |
The VAPB-PTPIP51 ER-mitochondria tethers regulate autophagy. Overexpression of VAPB or PTPIP51 (tightening contacts) impairs autophagosome formation, while siRNA-mediated knockdown (loosening contacts) stimulates it. An artificial ER-mitochondria linker rescues the effects of VAPB/PTPIP51 siRNA on autophagy, demonstrating that this is a direct consequence of tethering. The mechanism involves Ca2+ delivery from ER to mitochondria. |
siRNA knockdown, VAPB/PTPIP51 overexpression, synthetic ER-mitochondria linker rescue, autophagosome quantification (fluorescence microscopy), Ca2+ measurements |
Current biology : CB |
High |
28132811
|
| 2017 |
PTPIP51 regulates mitochondria-sarcoplasmic reticulum (SR) contact in cardiomyocytes. Overexpression of PTPIP51 increases mitochondria-SR contacts and elevates mitochondrial Ca2+ uptake via the mitochondrial Ca2+ uniporter (MCU). Cardiac-specific knockdown of PTPIP51 reduces myocardial infarct size and injury after ischemia/reperfusion. MCU inhibition/knockdown reverses PTPIP51-mediated mitochondrial Ca2+ increase and cardiomyocyte apoptosis. |
Adenovirus-mediated overexpression, cardiac-specific knockdown, electron microscopy (contact quantification), mitochondrial Ca2+ assays, MCU inhibitor/siRNA epistasis, infarct size measurement |
Scientific reports |
High |
28345618
|
| 2019 |
VAPB and PTPIP51 localize to neuronal synapses and form contacts there. Stimulating neuronal activity increases ER-mitochondria contacts and the VAPB-PTPIP51 interaction. siRNA loss of VAPB or PTPIP51 perturbs synaptic function and dendritic spine morphology, demonstrating a role for the tether in synaptic activity. |
Immunofluorescence co-localization, proximity ligation assay, live-cell Ca2+ imaging upon neuronal stimulation, siRNA knockdown with synaptic activity and spine morphology readouts |
Acta neuropathologica communications |
High |
30841933
|
| 2021 |
Crystal structure of the TPR domain of PTPIP51 reveals an archetypal TPR fold with a lipid-like molecule in the binding pocket. PTPIP51 binds and transfers phospholipids, particularly phosphatidic acid (PA), in vitro. Depletion of PTPIP51 reduces mitochondrial cardiolipin levels. The PTPIP51-VAPB interaction is mediated by an FFAT-like motif in PTPIP51 and the MSP domain of VAPB. |
X-ray crystallography (TPR domain structure), in vitro phospholipid binding/transfer assays, siRNA knockdown with cardiolipin measurement, mutational analysis of FFAT-like motif and MSP domain |
EMBO reports |
High |
33938112
|
| 2022 |
The coiled-coil domain of PTPIP51 (not the FFAT motif alone) is essential for VAPB binding in the context of full-length proteins in cells, for formation of ER-mitochondria contacts, and for IP3 receptor-mediated delivery of Ca2+ from ER to mitochondria. Deletion of the FFAT motif had little effect on VAPB binding, while mutation/deletion of the coiled-coil domain markedly reduced binding and abrogated tethering and Ca2+ transfer functions. |
Immunoprecipitation from transfected cells with deletion/mutation constructs, electron microscopy (ER-mitochondria contact quantification), IP3R-mediated Ca2+ delivery assays |
Frontiers in cell and developmental biology |
High |
36120587
|
| 2022 |
The mitochondrial E3 ubiquitin ligase MITOL/MARCH5 interacts with and ubiquitinates RMDN3/PTPIP51 at lysine residue 89. Loss of MITOL or K89R substitution in RMDN3 significantly reduces its phosphatidic acid (PA)-binding activity, indicating that MITOL-mediated ubiquitination activates RMDN3 PA-transfer activity at the mitochondria-ER contact site. |
Proximity-dependent biotin labeling (APEX2), Co-IP, site-directed mutagenesis (K89R), in vitro PA-binding assay |
Journal of biochemistry |
High |
34964862
|
| 2025 |
Mitochondrial ROS increases MERC (mitochondria-ER contact) formation via RMDN3-VAPB tethering driven by RMDN3 phosphorylation. RMDN3 transfers lipid radicals from mitochondria to the ER via its TPR domain (demonstrated by in vitro liposome assay). Disruption of RMDN3-VAPB tethering causes lipid radical accumulation in mitochondria and cell death, defining a cell survival role for MERCs in lipid radical removal under mitochondrial damage. |
NanoBiT/MERBiT split-luciferase system for live-cell MERC measurement, in vitro liposome lipid radical transfer assay, RMDN3 phosphorylation analysis, siRNA/genetic disruption with lipid radical and cell death readouts |
Nature communications |
High |
39929810
|
| 2006 |
PTPIP51 is a mitochondrial protein requiring its N-terminal transmembrane (TM) domain for mitochondrial targeting. Overexpression induces apoptosis via decrease in mitochondrial membrane potential, cytochrome c release, caspase-3 activation, PARP cleavage, and phosphatidylserine externalization. Deletion of the TM domain prevents mitochondrial localization and abrogates apoptosis-inducing function. |
GFP-fusion subcellular localization, deletion mutant analysis, mitochondrial membrane potential assay (JC-1), cytochrome c release assay, caspase-3 and PARP cleavage, Annexin V staining |
Apoptosis : an international journal on programmed cell death |
Medium |
16820967
|
| 2008 |
PTPIP51 regulates cell morphology and motility via the Raf-MEK-ERK cascade. It interacts with Raf-1 through 14-3-3 scaffold proteins and activates ERK; this is blocked by MEK inhibitor or dominant-negative Raf-1 but not dominant-negative Ras. Two redundant 14-3-3-binding domains in PTPIP51 were identified by deletion/mutation analysis. |
Overexpression/siRNA knockdown with migration/adhesion assays, MEK inhibitor and dominant-negative Raf-1/Ras epistasis, Co-IP for Raf-1/14-3-3 interaction, deletion/mutation analysis of 14-3-3-binding domains |
Cellular signalling |
Medium |
18771726
|
| 2012 |
Tyrosine 176 phosphorylation of PTPIP51 by c-Src regulates its interaction with 14-3-3β and Raf-1. Increased phosphorylation at Y176 causes a sharp drop in PTPIP51-14-3-3β and 14-3-3β-Raf-1 interactions. Phosphorylation status also regulates PTPIP51 interactions with DAGKα and PKA. |
Pharmacological modulation of c-Src activity and PTP1B phosphatase inhibition in HaCaT keratinocytes, proximity ligation assay (Duolink) for protein interactions, confocal microscopy |
Cell biochemistry and biophysics |
Medium |
22544307
|
| 2012 |
PTPIP51 interacts with CGI-99 and Nuf2 in vitro and in vivo, and the PTPIP51/CGI-99 and PTPIP51/Nuf-2 complexes localize to the equatorial region during mitosis. PTPIP51 associates with the microtubular cytoskeleton and spindle apparatus. Phosphorylated PTPIP51 accumulates at spindle poles. During M/G1 transition, PTPIP51 interacts strongly with PTP1B, restoring PTPIP51-Raf-1 interaction that is depleted in mitotic cells. |
Proximity ligation assay (Duolink), confocal microscopy, cell synchronization with nocodazole |
Biomolecules |
Medium |
24970130
|
| 2011 |
PTPIP51 is phosphorylated at tyrosine 176 by Lyn and c-Src kinases in AML cells. In AML blasts, PTP1B (the cognate phosphatase for PTPIP51) is absent, preventing dephosphorylation. PTPIP51 interacts with c-Kit in AML cells, identifying it as a component of c-Kit signaling. The hyperphosphorylation prevents PTPIP51-Raf-1 interaction, contributing to increased MAPK-driven proliferation. |
Immunohistochemistry with peptide-specific antibodies, proximity ligation assay, confocal co-localization, immunoblot |
Leukemia research |
Medium |
21513978
|
| 2025 |
RHOA (small GTPase) binds to the ER protein VAPB and regulates complex formation between VAPB and mitochondrial PTPIP51, thereby tuning MERCS levels. RHOA knockdown or increased degradation via CUL3 overexpression reduces MERCS; RHOA upregulation increases MERCS. Disease alleles of RHOA, CUL3, and VAPB perturb this regulatory mechanism. |
Genome-wide CRISPRi screen, Co-IP (RHOA-VAPB binding), MERCS quantification upon RHOA/CUL3 manipulation, disease allele analysis |
Nature communications |
High |
41392169
|
| 2022 |
VAPB protein levels are reduced and VAPB-PTPIP51 tethers are disrupted in post-mortem spinal cord motor neurons from ALS patients, as quantified by proximity ligation assay, confirming that disruption of the tether occurs in human ALS tissue. |
Proximity ligation assay in post-mortem human spinal cord sections, immunoblotting for VAPB levels |
Frontiers in cell and developmental biology |
Medium |
36051435
|
| 2024 |
Overexpression of VAPB or PTPIP51 corrects mutant TDP43-induced damage to IP3 receptor delivery of Ca2+ to mitochondria and to synaptic function. UDCA (FDA-approved drug) corrects TDP43-linked damage to the VAPB-PTPIP51 interaction by inhibiting TDP43-mediated GSK3β activation, identifying GSK3β inhibition as the mechanism of UDCA action on this tether. |
VAPB/PTPIP51 overexpression rescue experiments, Ca2+ imaging, synaptic activity assays, UDCA pharmacological treatment, GSK3β activity assays |
Acta neuropathologica communications |
Medium |
38395965
|
| 2022 |
PTPIP51 interacts with PTEN to form a PTPIP51-PTEN-CK2 complex, which induces phosphorylation of PTEN at Thr382/383. This leads to ubiquitylation and lysosomal degradation of EGFR, thereby suppressing PI3K/Akt, RAS/RAF/ERK, and JAK/STAT3 downstream signaling in NSCLC cells. |
Co-immunoprecipitation, PTPIP51 overexpression and knockdown, EGFR ubiquitylation assay, lysosomal inhibitor experiments, downstream signaling (immunoblot), in vivo xenograft |
Life sciences |
Medium |
35240162
|
| 2015 |
PTPIP51 is required for the differentiation of photoreceptors. Silencing of PTPIP51 in postnatal retinal explants severely impairs final differentiation of photoreceptors (decreased rhodopsin-positive cells), while PTPIP51 misexpression does not alter RPC commitment, indicating a specific role in terminal photoreceptor maturation. |
Ex vivo electroporation for siRNA knockdown and misexpression in postnatal rat retinal explants, immunostaining for rhodopsin and lineage markers |
Neuroscience |
Medium |
25999297
|
| 2015 |
PTPIP51 forms a complex with RelA and IκBα. RelA bound to the PTPIP51 promoter represses its mRNA and protein expression. TNFα modulates this PTPIP51/RelA/IκBα complex. Direct PTPIP51-RelA and PTPIP51-IκBα interactions were confirmed in situ. |
Promoter binding assay, proximity ligation assay (Duolink) for direct protein-protein interactions, immunofluorescence co-localization, PDTC/TNFα pharmacological manipulation |
Biomolecules |
Low |
25893721
|
| 2025 |
Phosphorylation of α-synuclein at serine 129 increases VAPB-PTPIP51 interactions. α-syn interacts directly with PTPIP51, and this interaction is modulated by the phosphorylation state of α-syn at S129 (confirmed by Co-IP and molecular dynamics simulation). |
Co-immunoprecipitation, mass spectrometry, molecular dynamics simulation, Co-IP in Thy1-SNCA transgenic mouse brain |
Acta neuropathologica communications |
Low |
39994794
|