Affinage

PRTG

Protogenin · UniProt Q2VWP7

Length
1150 aa
Mass
127.1 kDa
Annotated
2026-06-10
37 papers in source corpus 11 papers cited in narrative 12 extracted findings
Cross-family judge faithfulness: 5/6 claims corpus-supported (83%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PRTG (Protogenin) is a transmembrane immunoglobulin-superfamily receptor that marks a transitional developmental stage and suppresses premature neuronal differentiation, defining the window between pluripotent epiblasts and committed neural progenitors (PMID:20335479). It functions as a ligand-activated receptor: ERdj3, a stress-inducible ER DnaJ homolog, binds PRTG and acts as a ligand that suppresses neurogenesis (PMID:20335479), and PRTG signals through Radil to convert α5β1-integrins to high-affinity conformations, forming an ERdj3/PRTG/Radil/α5β1-integrin axis that promotes cephalic neural crest cell survival and migration (PMID:23744351). In addition to signaling, PRTG mediates homophilic cell adhesion to control the timing of paraxial mesoderm ingression and somite organization (PMID:21129372), and it is processed by sequential proteolysis culminating in γ-secretase cleavage that releases a nuclear-translocating intracellular domain (PRTG-ICD) (PMID:22150322). PRTG also integrates into TGFβ-family signaling by physically interacting with GDF11 to sustain phospho-Smad2 activity, driving posterior HOX gene expression and vertebral patterning (PMID:39702818). Its expression is tightly tuned by microRNAs across contexts—let-7/miR-125/miR-9 in retinal progenitors (PMID:23754433) and miR-9 in chondroblasts, where PRTG promotes caspase-3–dependent apoptosis (PMID:24007463). In disease settings, PRTG is transcriptionally induced by ZEB1 downstream of H. pylori to activate cGMP/PKG signaling and drive gastric cancer progression (PMID:33542225).

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 2010 High

    Established PRTG's core developmental role by showing it defines and maintains an undifferentiated transition stage, answering whether this early embryonic receptor restrains neural commitment.

    Evidence RNAi knockdown, dominant-negative overexpression, and in vitro/in ovo differentiation assays in P19 cells and chick embryos

    PMID:20335479

    Open questions at the time
    • Did not identify the downstream effectors linking PRTG to differentiation control
    • Mechanism of how PRTG senses the timing signal unresolved
  2. 2010 High

    Identified ERdj3 as a PRTG ligand, answering what extracellular cue engages the receptor to suppress neurogenesis.

    Evidence Yeast two-hybrid screen, in situ binding assay, neutralizing antibody and ectodomain competition with purified ERdj3 in differentiation assays

    PMID:20335479

    Open questions at the time
    • Did not define the intracellular signaling cascade triggered by ERdj3 binding
    • Physiological source/availability of secreted ERdj3 in vivo not established
  3. 2010 Medium

    Placed PRTG upstream of BMP4 in tooth morphogenesis, extending its role beyond the neural lineage.

    Evidence Antisense oligonucleotide inhibition in cultured mouse mandible explants with Bmp4 expression readout

    PMID:21108791

    Open questions at the time
    • Direct versus indirect regulation of Bmp4 not distinguished
    • No receptor signaling mechanism defined in this context
  4. 2010 High

    Demonstrated PRTG mediates homophilic adhesion to control mesoderm ingression, distinguishing an adhesion function from its signaling role.

    Evidence L-cell aggregation assay plus in ovo gain- and loss-of-function in chick paraxial mesoderm

    PMID:21129372

    Open questions at the time
    • Structural basis of homophilic binding not defined
    • Relationship between adhesion and ligand-dependent signaling unresolved
  5. 2011 Medium

    Showed PRTG undergoes γ-secretase–dependent cleavage releasing a nuclear ICD, raising the possibility of direct receptor-to-nucleus signaling.

    Evidence Biochemical cleavage analysis, γ-secretase inhibitor experiments, and subcellular localization in cultured cells and chick embryos

    PMID:22150322

    Open questions at the time
    • Nuclear targets or transcriptional activity of PRTG-ICD unknown
    • Single lab without full mutagenesis controls
  6. 2013 High

    Resolved the intracellular signaling axis by placing Radil downstream of PRTG to activate α5β1-integrins, explaining how ERdj3/PRTG promotes neural crest survival and migration.

    Evidence Prtg knockout mice with lineage tracing, yeast two-hybrid, integrin conformational activation assay, RNAi epistasis, and transwell migration

    PMID:23744351

    Open questions at the time
    • Biochemical link between PRTG cytoplasmic domain and Radil not mapped
    • How integrin activation feeds back to differentiation control unclear
  7. 2013 Medium

    Revealed a context-specific pro-apoptotic role for PRTG in chondroblasts under miR-9 control, contrasting its pro-survival function in neural crest.

    Evidence miR-9 target validation, PRTG overexpression with caspase-3 activity assay, and siRNA rescue in chondroblasts

    PMID:24007463

    Open questions at the time
    • Mechanism linking PRTG to caspase-3 activation unknown
    • Reconciliation with PRTG pro-survival signaling not addressed
  8. 2013 Medium

    Showed miRNA-driven downregulation of PRTG is required for temporal progression of retinal neurogenesis, confirming PRTG as a brake on progenitor maturation.

    Evidence Microarray target identification in Dicer-CKO retinas and overexpression rescue in retinal progenitors

    PMID:23754433

    Open questions at the time
    • Direct miRNA-PRTG targeting not biochemically confirmed in this study
    • Downstream effectors maintaining the progenitor state unidentified
  9. 2021 Medium

    Connected PRTG to gastric cancer pathogenesis by showing H. pylori–driven ZEB1 induces PRTG to activate cGMP/PKG signaling.

    Evidence ZEB1 promoter recruitment, PRTG loss-of-function in cells and tumor-bearing mice, and PKG inhibitor (KT5823) treatment

    PMID:33542225

    Open questions at the time
    • How PRTG mechanistically activates cGMP/PKG signaling not defined
    • Whether ERdj3/Radil/integrin axis operates in this cancer context untested
  10. 2024 High

    Integrated PRTG into TGFβ-family signaling by showing it binds GDF11 to sustain pSmad2 and drive posterior HOX activation and vertebral patterning.

    Evidence Prtg knockout mice, transcriptomics, pSmad2 immunodetection, co-IP with GDF11, and hiPSC-PSM differentiation with GDF11 rescue

    PMID:39702818

    Open questions at the time
    • Whether PRTG acts as a co-receptor for GDF11 or stabilizes ligand availability not resolved
    • Relationship between GDF11/Smad2 role and the ERdj3/Radil axis unknown
  11. 2023 Low

    Proposed WFIKKN2 as a ligand acting through DCC-family receptors including PRTG in axon guidance, expanding the receptor's ligand repertoire.

    Evidence Ligand-receptor binding identification and axon guidance assays in mouse sensory and motor axons (preprint)

    PMID:37398498

    Open questions at the time
    • PRTG-specific WFIKKN2 functional interaction not independently validated
    • Preprint, not peer reviewed
    • Downstream signaling from WFIKKN2-PRTG unmapped
  12. 2026 Medium

    Identified a miR-4458/PRTG axis in vascular smooth muscle cell dedifferentiation, extending PRTG regulation to cardiovascular phenotypic transformation.

    Evidence Dual-luciferase reporter assay, miR-4458 and PRTG gain/loss-of-function, viability and migration assays in ox-LDL-treated VSMCs

    PMID:41631733

    Open questions at the time
    • Mechanistic link between PRTG and retinoic acid signaling not defined
    • Single lab, single study

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PRTG's multiple, context-dependent activities—adhesion, ERdj3/Radil/integrin signaling, GDF11/Smad2 modulation, γ-secretase ICD release, and pro-apoptotic versus pro-survival outputs—are coordinated by a single receptor remains unresolved.
  • No structural model of ligand engagement or domain function
  • Nuclear targets of PRTG-ICD unidentified
  • Mechanism switching PRTG between pro-survival and pro-apoptotic outputs unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 3 GO:0098772 molecular function regulator activity 2 GO:0098631 cell adhesion mediator activity 1
Localization
GO:0005886 plasma membrane 2 GO:0005634 nucleus 1
Pathway
R-HSA-1266738 Developmental Biology 3 R-HSA-162582 Signal Transduction 3 R-HSA-5357801 Programmed Cell Death 1

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 PRTG protein expression is strong in the neural tube of mouse embryos between E7.75 and E9.5, disappearing after E10.5 when nestin appears; perturbation of PRTG activity by RNAi or dominant-negative mutant in P19 cells and chick embryos increases neuronal differentiation, establishing PRTG as a suppressor of premature neuronal differentiation defining a transition stage between pluripotent epiblasts and committed neural progenitors. RNAi knockdown, dominant-negative overexpression, in vitro differentiation assay (P19 cells), in ovo chick embryo perturbation The Journal of neuroscience High 20335479
2010 PRTG binds ERdj3 (a stress-inducible ER DnaJ homolog) as identified by yeast two-hybrid screening and confirmed by in situ binding assay; purified ERdj3 reduces neurogenesis in P19 cells, an effect blocked by neutralizing anti-PRTG antibody or PRTG ectodomain, demonstrating ERdj3 acts as a PRTG ligand to suppress neuronal differentiation. Yeast two-hybrid screening, in situ binding assay, neutralizing antibody competition, purified protein addition to differentiation assay The Journal of neuroscience High 20335479
2010 PRTG mediates homophilic cell adhesion as demonstrated by an aggregation assay in L-cells; overexpression of PRTG in presumptive paraxial mesoderm of avian embryos delayed mesodermal cell migration due to augmented adhesiveness, while siRNA knockdown impaired successive ingression of epiblast cells and disorganized somite epithelial structure. L-cell aggregation assay, in ovo overexpression, siRNA knockdown in chick embryos Developmental biology High 21129372
2011 PRTG undergoes sequential proteolytic cleavage: first at the extracellular domain, then at the transmembrane/intracellular interface by γ-secretase, releasing the intracellular domain (PRTG-ICD). PRTG-ICD contains a putative nuclear localization signal and translocates to the nucleus in cultured cells and neuroepithelial cells of chick embryos. Biochemical cleavage analysis, γ-secretase inhibitor experiments, subcellular fractionation/localization in cultured cells and chick embryos Development, growth & differentiation Medium 22150322
2013 Prtg-deficient mice show increased apoptosis of rostral cephalic neural crest cells (R-CNCCs) leading to palatine and skull malformations; PRTG interacts with Radil (identified by yeast two-hybrid) and overexpression of PRTG induces translocation of Radil from cytoplasm to cell membrane. PRTG and Radil together activate α5β1-integrins to high-affinity conformations, further enhanced by ERdj3 ligand; Radil knockdown abolishes this effect, placing Radil downstream of PRTG in an ERdj3/PRTG/Radil/α5β1-integrin signaling axis that promotes CNCC survival and migration. Prtg knockout mice, lineage tracing, yeast two-hybrid, overexpression/subcellular localization, integrin activation assay, RNAi knockdown, in vitro transwell migration assay Cell death & disease High 23744351
2013 PRTG is a target of miR-9 in chondroblasts; overexpression of PRTG induces caspase-3 activation and apoptosis in chondroblasts, whereas co-treatment with miR-9 precursor or PRTG-specific siRNA blocks this apoptotic signaling, establishing PRTG as a pro-apoptotic factor regulated by miR-9 during chondrogenesis. miRNA target validation, PRTG overexpression, caspase-3 activity assay, siRNA knockdown in chondroblasts Cell communication and signaling Medium 24007463
2013 Overexpression of Prtg in Dicer-conditional knockout retinas maintains the early progenitor state and prevents transition to late progenitors, identifying PRTG as a target of let-7/miR-125/miR-9 miRNAs that normally downregulate it to permit temporal progression of retinal neurogenesis. Microarray identification of targets in Dicer-CKO retinas, overexpression rescue assay in retinal progenitors Proceedings of the National Academy of Sciences Medium 23754433
2021 H. pylori infection promotes ZEB1 stabilization and ZEB1 recruitment to the PRTG promoter to transcriptionally upregulate PRTG; upregulated PRTG then activates cGMP/PKG signaling to promote proliferation, metastasis, and chemoresistance of gastric cancer cells, as confirmed by PKG inhibitor (KT5823) experiments in vitro and in vivo. Transcription factor binding (ZEB1 ChIP/promoter recruitment), PRTG loss-of-function in cellular and tumor-bearing mouse models, PKG inhibitor treatment Cell death & disease Medium 33542225
2024 PRTG knockout mice exhibit anterior homeotic transformations in vertebral columns with altered Hox gene expression; Prtg-/- embryos show decreased phospho-Smad2 and downstream TGFβ target genes in the developing tail. PRTG physically interacts with GDF11 to enhance GDF11/pSmad2 signaling, and in human iPSC-derived presomitic mesoderm cells PRTG knockout delays posterior HOX gene expression, rescued by GDF11 supplementation. Prtg knockout mice, transcriptomic profiling, pSmad2 immunodetection, co-immunoprecipitation/interaction assay with GDF11, hiPSC-PSM differentiation model with PRTG KO and GDF11 rescue Communications biology High 39702818
2023 WFIKKN2, a secreted protein, was identified as a ligand for the DCC family receptors including Protogenin (Prtg/PRTG); WFIKKN2 acts through divergent DCC family members to guide axons, demonstrating that PRTG participates in axon guidance ligand-receptor interactions. Ligand-receptor binding identification, axon guidance functional assays in mouse peripheral sensory and motor axons bioRxivpreprint Low 37398498
2010 Prtg antisense oligonucleotide treatment of cultured mouse mandibles (E10.5) caused significant tooth germ growth inhibition and decreased Bmp-4 expression, placing PRTG upstream of BMP4 in early tooth morphogenesis. Antisense oligonucleotide (AS-S-ODN) inhibition in mandible explant culture, gene expression analysis BMC developmental biology Medium 21108791
2026 miR-4458 directly targets PRTG as confirmed by dual-luciferase reporter assay; in ox-LDL-treated VSMCs, miR-4458 overexpression downregulates PRTG and promotes phenotypic transformation, proliferation, and migration, while PRTG knockdown mimics this effect, establishing a miR-4458/PRTG/retinoic acid signaling axis in VSMC dedifferentiation. Dual-luciferase reporter assay, miRNA overexpression/knockdown, siRNA knockdown, CCK-8 viability assay, Transwell migration assay in ox-LDL-treated VSMCs Lipids Medium 41631733

Source papers

Stage 0 corpus · 37 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Conserved microRNA pathway regulates developmental timing of retinal neurogenesis. Proceedings of the National Academy of Sciences of the United States of America 196 23754433
1997 Protein secretion by Gram-negative bacterial ABC exporters--a review. Gene 155 9224868
1994 A carboxyl-terminal four-amino acid motif is required for secretion of the metalloprotease PrtG through the Erwinia chrysanthemi protease secretion pathway. The Journal of biological chemistry 69 8132636
2010 Protogenin defines a transition stage during embryonic neurogenesis and prevents precocious neuronal differentiation. The Journal of neuroscience : the official journal of the Society for Neuroscience 48 20335479
1994 PrtD, the integral membrane ATP-binding cassette component of the Erwinia chrysanthemi metalloprotease secretion system, exhibits a secretion signal-regulated ATPase activity. The Journal of biological chemistry 43 7961727
2013 MicroRNA-9 regulates survival of chondroblasts and cartilage integrity by targeting protogenin. Cell communication and signaling : CCS 38 24007463
1995 New protease mutants in Aspergillus niger result in strongly reduced in vitro degradation of target proteins; genetical and biochemical characterization of seven complementation groups. Current genetics 37 8590475
1994 C-terminal secretion signal of an Erwinia chrysanthemi protease secreted by a signal peptide-independent pathway: proton NMR and CD conformational studies in membrane-mimetic environments. Biochemistry 31 8204613
2021 The novel ZEB1-upregulated protein PRTG induced by Helicobacter pylori infection promotes gastric carcinogenesis through the cGMP/PKG signaling pathway. Cell death & disease 27 33542225
1992 A fourth metalloprotease gene in Erwinia chrysanthemi. Research in microbiology 27 1299839
2024 Early rhombic lip Protogenin+ve stem cells in a human-specific neurovascular niche initiate and maintain group 3 medulloblastoma. Cell 25 38971152
2008 Design of stability at extreme alkaline pH in streptococcal protein G. Journal of biotechnology 24 18304667
2011 Exploring variation in binding of Protein A and Protein G to immunoglobulin type G by isothermal titration calorimetry. Journal of molecular recognition : JMR 23 22038801
2022 Genome Wide Association Study of Beef Traits in Local Alpine Breed Reveals the Diversity of the Pathways Involved and the Role of Time Stratification. Frontiers in genetics 22 35058966
2008 Association of ADHD and the Protogenin gene in the chromosome 15q21.3 reading disabilities linkage region. Genes, brain, and behavior 19 19076634
2013 Protogenin prevents premature apoptosis of rostral cephalic neural crest cells by activating the α5β1-integrin. Cell death & disease 17 23744351
2010 Protogenin, a new member of the immunoglobulin superfamily, is implicated in the development of the mouse lower first molar. BMC developmental biology 16 21108791
2006 Cloning of vertebrate Protogenin (Prtg) and comparative expression analysis during axis elongation. Developmental dynamics : an official publication of the American Association of Anatomists 15 16881056
2023 Overweight/obesity-related transcriptomic signature as a correlate of clinical outcome, immune microenvironment, and treatment response in hepatocellular carcinoma. Frontiers in endocrinology 13 36714595
2021 Autism spectrum disorder and comorbid neurodevelopmental disorders (ASD-NDDs): Clinical and genetic profile of a pediatric cohort. Clinica chimica acta; international journal of clinical chemistry 10 34800434
2024 Combining genetic and single-cell expression data reveals cell types and novel candidate genes for orofacial clefting. Scientific reports 8 39489835
2017 Validation of loci at 2q14.2 and 15q21.3 as risk factors for testicular cancer. Oncotarget 7 29560096
2022 Progesterone stimulates cortisol production in the maturing bovine cumulus-oocyte complex. Theriogenology 6 35780557
2010 Protogenin mediates cell adhesion for ingression and re-epithelialization of paraxial mesodermal cells. Developmental biology 6 21129372
2025 cfMethylPre: deep transfer learning enhances cancer detection based on circulating cell-free DNA methylation profiling. Briefings in bioinformatics 5 40581983
2019 Integration Host Factor Is Essential for Biofilm Formation, Extracellular Enzyme, Zeamine Production, and Virulence in Dickeya zeae. Molecular plant-microbe interactions : MPMI 5 30226395
2025 Modulation of Stemness and Differentiation Regulators by Valproic Acid in Medulloblastoma Neurospheres. Cells 4 39851500
2011 Nuclear translocation of intracellular domain of Protogenin by proteolytic cleavage. Development, growth & differentiation 4 22150322
2025 A Lrp/AsnC Family Transcriptional Regulator Lrp Is Essential for the Pathogenicity of Dickeya oryzae. Molecular plant pathology 3 40483543
2024 Protogenin facilitates trunk-to-tail HOX code transition via modulating GDF11/SMAD2 signaling in mammalian embryos. Communications biology 2 39702818
2022 Genetic Polymorphisms Associated with Prothrombin Time and Activated Partial Thromboplastin Time in Chinese Healthy Population. Genes 2 36292752
2021 Partial Discharge and Internet of Things: A Switchgear Cell Maintenance Application Using Microclimate Sensors. Sensors (Basel, Switzerland) 2 34960460
2025 Insights into the alteration of vaginal microbiota and metabolites in pregnant woman with preterm delivery: prospective cohort study. Frontiers in cellular and infection microbiology 1 41050755
2023 WFIKKN2 is a bifunctional axon guidance cue that signals through divergent DCC family receptors. bioRxiv : the preprint server for biology 1 37398498
2026 miR-4458/PRTG Axis Promotes Vascular Smooth Muscle Cell Dedifferentiation in Atherosclerosis. Lipids 0 41631733
2026 Toward Understanding the Role of miRNAs in Cleft Palate Only: Observations from Patient Tissues and In Vitro Assays. International journal of molecular sciences 0 41828317
2025 Modulation of Stemness and Differentiation Regulators by Valproic Acid in Medulloblastoma Neurospheres. bioRxiv : the preprint server for biology 0 39386542

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