Affinage

POLR3H

DNA-directed RNA polymerase III subunit RPC8 · UniProt Q9Y535

Length
204 aa
Mass
22.9 kDa
Annotated
2026-06-10
56 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

POLR3H (RPC8/C25) is an essential subunit of RNA Polymerase III, the enzyme responsible for synthesizing tRNAs and other small RNAs, and is required for normal tRNA synthesis in vivo (PMID:8065349). Within Pol III it is present in submolar ratios and dissociates readily from the purified enzyme, and although a conditional mutant of the yeast ortholog C25 specifically reduces tRNA synthesis relative to 5.8S rRNA, the subunit is dispensable for transcription in certain in vitro assays (PMID:8065349). POLR3H is indispensable for development: complete loss of function causes early embryonic lethality in mice, whereas a homozygous missense mutation (p.Asp50Gly) is compatible with viability but impairs reproductive development, producing delayed puberty, reduced fertility, and fewer primary ovarian follicles in association with decreased ovarian Foxo3a expression (PMID:30830215). In humans, this same POLR3H mutation causes primary ovarian insufficiency (PMID:30830215).

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 1994 High

    Established that POLR3H corresponds to a conserved, dissociable subunit of RNA Polymerase III essential for viability and for normal tRNA synthesis, defining its core enzymatic context.

    Evidence Yeast gene identification by sequence homology to RPB7, biochemical dissociation from purified Pol III, and temperature-sensitive conditional mutant analysis scoring tRNA versus 5.8S rRNA synthesis

    PMID:8065349

    Open questions at the time
    • Why the subunit is dispensable in certain in vitro transcription assays yet required in vivo is unresolved
    • The structural basis for its submolar stoichiometry and easy dissociation is not defined
    • Its sequence relationship to RPB7 implies but does not demonstrate a specific molecular role within Pol III
  2. 2019 High

    Connected POLR3H function to mammalian development and human disease, showing the subunit is essential for embryogenesis and that hypomorphic missense alleles selectively disrupt reproductive development.

    Evidence Whole-exome sequencing in human families plus CRISPR/Cas9 mouse null (lethal) and knock-in point-mutation lines, with phenotyping of puberty, fertility, follicle counts, and Foxo3a expression

    PMID:30830215

    Open questions at the time
    • The mechanism linking POLR3H/Pol III activity to reduced Foxo3a expression in the ovary is not established
    • Whether the p.Asp50Gly allele alters Pol III assembly, stability, or transcriptional output is undefined
    • Tissue-specific basis for the ovarian/reproductive vulnerability is unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How POLR3H contributes mechanistically to Pol III transcription and how its partial loss translates into the Foxo3a-associated folliculogenesis defect remain open.
  • No structural model of POLR3H within the human Pol III complex in the corpus
  • No direct link between specific Pol III transcript changes and the reproductive phenotype
  • No biochemical characterization of how the p.Asp50Gly substitution perturbs subunit function

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140098 catalytic activity, acting on RNA 1
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-74160 Gene expression (Transcription) 2
Complex memberships
RNA Polymerase III

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1994 The yeast gene YKL1 encodes the RNA Polymerase III subunit C25 (ortholog of human POLR3H/RPC8). C25 is present in submolar ratios in Pol III, easily dissociates from the enzyme, is essential for cell growth and viability, but is not required for transcription in certain in vitro assays. It is related in sequence to the RNA Polymerase II subunit RPB7. A C25 conditional mutant grown at the nonpermissive temperature synthesizes tRNA at reduced rates relative to 5.8S rRNA, a hallmark of all characterized RNA Polymerase III mutants. Gene identification by sequence homology to RPB7; SDS-PAGE mobility matching; conditional mutant analysis (temperature-sensitive growth) with tRNA and 5.8S rRNA synthesis assay; dissociation studies from purified Pol III Molecular and cellular biology High 8065349
2019 A homozygous missense mutation (p.Asp50Gly) in POLR3H causes primary ovarian insufficiency in humans. Complete loss-of-function (knockout) of Polr3h in mice caused early embryonic lethality, establishing that POLR3H is essential for embryonic development. Mice carrying the homozygous point mutation (Polr3hD50G) were viable but showed delayed pubertal development, decreased fertility, small litter sizes, and decreased expression of ovarian Foxo3a with lower numbers of primary follicles. Whole-exome sequencing in human families; CRISPR/Cas9-generated mouse knockout (lethal) and knock-in point mutation lines; phenotypic analysis of pubertal timing, fertility, litter size; ovarian follicle counting; Foxo3a expression assay The Journal of clinical endocrinology and metabolism High 30830215

Source papers

Stage 0 corpus · 56 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 Novel effects of the prototype translocating Escherichia coli, strain C25 on intestinal epithelial structure and barrier function. Cellular microbiology 54 16309464
2016 A Geranylfarnesyl Diphosphate Synthase Provides the Precursor for Sesterterpenoid (C25) Formation in the Glandular Trichomes of the Mint Species Leucosceptrum canum. The Plant cell 50 26941091
1985 Biosynthesis of bile acids in cerebrotendinous xanthomatosis. Relationship of bile acid pool sizes and synthesis rates to hydroxylations at C-12, C-25, and C-26. The Journal of clinical investigation 44 4031069
2014 Three new and eleven known unusual C25 steroids: activated production of silent metabolites in a marine-derived fungus by chemical mutagenesis strategy using diethyl sulphate. Marine drugs 40 24633254
1994 C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7. Molecular and cellular biology 38 8065349
2019 Exome Sequencing Reveals the POLR3H Gene as a Novel Cause of Primary Ovarian Insufficiency. The Journal of clinical endocrinology and metabolism 32 30830215
2004 Novel metabolism of 1 alpha,25-dihydroxyvitamin D3 with C24-C25 bond cleavage catalyzed by human CYP24A1. Biochemistry 29 15078099
1979 Configuration at C-25 in 3 alpha, 7 alpha, 12 alpha-trihydroxy-5 beta-cholestan-26-oic acid by X-ray crystallography. Journal of lipid research 26 533828
2021 A Cryptic Plant Terpene Cyclase Producing Unconventional 18- and 14-Membered Macrocyclic C25 and C20 Terpenoids with Immunosuppressive Activity. Angewandte Chemie (International ed. in English) 25 34580976
2021 Occurrence and biosynthesis of plant sesterterpenes (C25), a new addition to terpene diversity. Plant communications 24 34746758
1981 An NADP-dependent 3 alpha-hydroxysteroid dehydrogenase of rat liver active against C19, C20, C23, C24, C25 and C26 steroids. Hoppe-Seyler's Zeitschrift fur physiologische Chemie 21 6941918
2004 Disruption of ergosterol biosynthesis, growth, and the morphological transition in Candida albicans by sterol methyltransferase inhibitors containing sulfur at C-25 in the sterol side chain. Lipids 20 15638241
2009 C29 sterols with a cyclopropane ring at C-25 and 26 from the Vietnamese marine sponge Ianthella sp. and their anticancer properties. Bioorganic & medicinal chemistry letters 19 19615900
2021 Comparative Genomic and Physiological Analysis against Clostridium scindens Reveals Eubacterium sp. c-25 as an Atypical Deoxycholic Acid Producer of the Human Gut Microbiota. Microorganisms 18 34835380
2018 Four Molybdenum-Dependent Steroid C-25 Hydroxylases: Heterologous Overproduction, Role in Steroid Degradation, and Application for 25-Hydroxyvitamin D3 Synthesis. mBio 18 29921665
2022 Changes in Elastic Moduli of Fibrin Hydrogels Within the Myogenic Range Alter Behavior of Murine C2C12 and Human C25 Myoblasts Differently. Frontiers in bioengineering and biotechnology 16 35669058
2016 Regioselective hydroxylation of cholecalciferol, cholesterol and other sterol derivatives by steroid C25 dehydrogenase. Applied microbiology and biotechnology 16 27726023
2018 Isolation and Absolute Configurations of Diversiform C17, C21 and C25 Terpenoids from the Marine Sponge Cacospongia sp. Marine drugs 12 30597876
2017 Reaction mechanism of sterol hydroxylation by steroid C25 dehydrogenase - Homology model, reactivity and isoenzymatic diversity. Journal of inorganic biochemistry 12 28482186
2022 Peptidomics-based identification of an antimicrobial peptide derived from goat milk fermented by Lactobacillus rhamnosus (C25). Journal of food biochemistry 10 36226982
2018 Unified Strategy for 1,5,9- and 1,5,7-Triols via Configuration-Encoded 1,5-Polyol Synthesis: Preparation and Coupling of C15-C25 and C26-C40 Fragments of Tetrafibricin. The Journal of organic chemistry 10 30372076
1985 Microsomal C-25 hydroxylation of [3H]-vitamin D3 by the fetal and neonatal rat liver. Pediatric research 10 2999689
1999 Synthesis and Biological Activity of 25-Methoxy-, 25-Fluoro-, and 25-Azabrassinolide and 25-Fluorocastasterone: Surprising Effects of Heteroatom Substituents at C-25. The Journal of organic chemistry 9 11674612
2017 Vitamin D Analogues with a p-Hydroxyphenyl Group at the C25 Position: Crystal Structure of Vitamin D Receptor Ligand-Binding Domain Complexed with the Ligand Explains the Mechanism Underlying Full Antagonistic Action. Journal of medicinal chemistry 8 28954197
2008 Cyclobranol: a substrate for C25-methyl sterol side chains and potent mechanism-based inactivator of plant sterol methyltransferase. Bioorganic & medicinal chemistry letters 8 18590960
1991 In micronodular cirrhosis, hepatocytes retain a normal C-25 hydroxylation capacity toward vitamin D3: a study using the rat carbon tetrachloride-induced cirrhotic model. Hepatology (Baltimore, Md.) 8 1847894
1984 Measurement of 25,26-dihydroxyvitamin D: importance of the configuration of the C-25 hydroxyl group. Biochemistry 8 6543324
1984 7 alpha-Dehydroxylation of bile acids by resting cells of a Eubacterium lentum-like intestinal anaerobe, strain c-25. Applied and environmental microbiology 8 6721490
2004 C-25 hydroxylation of 1alpha,24(R)-dihydroxyvitamin D3 is catalyzed by 25-hydroxyvitamin D3-24-hydroxylase (CYP24A1): metabolism studies with human keratinocytes and rat recombinant CYP24A1. Archives of biochemistry and biophysics 6 15488475
2002 Effects of auxosporulation on distributions of C(25) and C(30) isoprenoid alkenes in Rhizosolenia setigera. Phytochemistry 6 11809448
2024 Highly selective whole-cell 25-hydroxyvitamin D3 synthesis using molybdenum-dependent C25-steroid dehydrogenase and cyclodextrin recycling. Microbial cell factories 5 38245746
2018 Biosynthetic machinery for C25,C25-diether archaeal lipids from the hyperthermophilic archaeon Aeropyrum pernix. Biochemical and biophysical research communications 5 29427665
2018 Toward the total synthesis of patellazole B: synthesis of an advanced C1-C25 fragment corresponding to the macrocyclic skeleton. Organic & biomolecular chemistry 5 30209471
2017 Optimization of overexpression of a chaperone protein of steroid C25 dehydrogenase for biochemical and biophysical characterization. Protein expression and purification 5 28343996
2002 Two novel metabolic pathways of 22-oxacalcitriol (OCT). C-25 dehydration and C-3 epimerization and biological activities of novel OCT metabolites. The Journal of biological chemistry 5 12417596
1983 Evidence for the existence of a C25-sesterterpene pathway of steroidogenesis not involving cholesterol as an obligatory intermediate. Canadian journal of biochemistry and cell biology = Revue canadienne de biochimie et biologie cellulaire 5 6627086
2018 Electrocatalytic Hydroxylation of Sterols by Steroid C25 Dehydrogenase from Sterolibacterium denitrificans. Chemistry (Weinheim an der Bergstrasse, Germany) 4 29573289
2016 The genetic basis of asymptomatic codon 8 frame-shift (HBB:c25_26delAA) β(0) -thalassaemia homozygotes. British journal of haematology 4 26771086
2015 A novel C₂₅ sterol peroxide from the endophytic fungus Phoma sp. EA-122. Zeitschrift fur Naturforschung. C, Journal of biosciences 4 26023990
2025 Total synthesis of linear lipodepsipeptide kavaratamide A and its C25-epimer. Organic & biomolecular chemistry 3 39807835
2024 Effects of producing high levels of hyperthermophile-specific C25,C25-archaeal membrane lipids in Escherichia coli. Biochemical and biophysical research communications 3 38972140
2015 A novel, soluble compound, C25, sensitizes to TRAIL-induced apoptosis through upregulation of DR5 expression. Anti-cancer drugs 3 25646742
2005 C-25 epimeric 26-haloponasterone A: synthesis, absolute configuration and moulting activity. Steroids 3 15885726
2025 Efficient C25-Hydroxylation of Vitamin D3 Utilizing an Artificial Self-Sufficient Whole-Cell Cytochrome P450 Biocatalyst. Journal of agricultural and food chemistry 2 40112285
2023 Structural analysis and biological activities of C25-amino and C25-nitro vitamin D analogs. Bioorganic chemistry 2 37054528
2022 A racemosin B derivative, C25, suppresses breast cancer growth via lysosomal membrane permeabilization and inhibition of autophagic flux. Biochemical pharmacology 2 35513042
2017 Synthesis of new C-25 and C-26 steroidal acids as potential ligands of the nuclear receptors DAF-12, LXR and GR. Steroids 2 28300583
2010 A new C29-sterol with a cyclopropane ring at C-25 and 26 from the Vietnamese marine sponge lanthella sp. Archives of pharmacal research 2 20162396
2024 Identification of a bacteria P450 enzyme from B. megaterium H-1 with vitamin D3 C-25 hydroxylation capabilities. Enzyme and microbial technology 1 39729738
2024 [Protective effect of tumor necrosis factor receptor-associated factor 6 inhibitor C25-140 on acute kidney injury induced by diquat poisoning in mice]. Zhonghua wei zhong bing ji jiu yi xue 1 39780671
1999 Influence of moderate cooling (37 degrees C-25 degrees C) on the reactivity of isolated rat tail artery. Acta physiologica, pharmacologica et therapeutica latinoamericana : organo de la Asociacion Latinoamericana de Ciencias Fisiologicas y [de] la Asociacion Latinoamericana de Farmacologia 1 10797852
1989 [5-Alkyl(C19-C25) resorcinols as regulators of succinate and NAD-dependent substrate oxidation by mitochondria]. Biokhimiia (Moscow, Russia) 1 2758080
2026 Pyridine-Fused C25 abeo-Steroid Alkaloids from a Fungus: Biomimetic Semisynthesis and Anti-HIV Mechanistic Study. Organic letters 0 41558029
2026 Structure-Guided Co-Evolution of Fungal Unspecific Peroxygenase for Improved VD3 C25-Hydroxylation by Substrate-Binding Pocket Engineering. Journal of agricultural and food chemistry 0 41811220
2025 Draft genome sequence of Lactobacillus rhamnosus C25, isolated from an Indian dairy cheese. Microbiology resource announcements 0 39945522
1992 [The effect of isomeric alkyl (C19--C25) methoxybenzoquinones on mitochondrial respiration]. Izvestiia Akademii nauk. Seriia biologicheskaia 0 1304855

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