| 2025 |
Crystal structures of Nir2 C-terminal domains reveal the molecular mechanism of PA sensing: the LNS2 domain binds phosphatidic acid via hydrogen bonds involving residues S1025, T1065, K1103, and K1126 to the PA phosphate headgroup; a salt bridge between E355 in Nir2 and R55 in VAPB is essential for the FFAT-VAPB interaction; and the DDHD domain forms a twofold symmetric dimer that contributes to stable membrane association. |
X-ray crystallography (three crystal structures: LNS2-PA, FFAT-VAPB, DDHD domain) with site-specific residue identification |
Proceedings of the National Academy of Sciences of the United States of America |
High |
41129229
|
| 2015 |
Nir2 functions as a bidirectional lipid exchanger at ER-PM contact sites: it transfers phosphatidylinositol (PtdIns) from the ER to the PM and phosphatidic acid (PtdOH) from the PM to the ER. In Nir2-depleted cells, PLC activation causes PtdOH accumulation at the PM and severely impairs PtdIns synthesis, leading to loss of PLC-coupled receptor signaling competence. |
RNAi knockdown, lipid reporter assays, live-cell imaging of PtdIns and PtdOH at ER-PM contact sites |
Developmental cell |
High |
26028218
|
| 2013 |
Nir2 is recruited to ER-PM junctions following receptor-induced Ca2+ signaling in a process facilitated by E-Syt1. At ER-PM junctions, Nir2 replenishes PM PIP2 after receptor-induced hydrolysis via its PITP activity, providing a feedback mechanism for sustained Ca2+ signaling. |
Genetically encoded ER-PM junction marker, live-cell imaging, siRNA knockdown of Nir2 and E-Syt1, PIP2 reporter assays |
Cell reports |
High |
24183667
|
| 2015 |
Nir2 detects PM PIP2 hydrolysis and translocates to ER-PM junctions via binding to phosphatidic acid through its C-terminal region. ER-resident PI is required for rapid PIP2 replenishment by Nir2. Nir2 and its homolog Nir3 differentially regulate PIP2 homeostasis: Nir2 responds to intense receptor stimulation while Nir3 maintains resting-state PIP2 levels, based on their distinct PA-binding and PI transfer activities. |
Fluorescence live-cell imaging of translocation, PA-binding assays, siRNA knockdown, PIP2 reporter assays, domain mutation analysis |
The Journal of biological chemistry |
High |
25887399
|
| 2016 |
In quiescent cells, Nir2 localizes to the ER via interaction of its FFAT domain with ER-bound VAP-A and VAP-B. After PLC activation, Nir2 also binds to the PM via its C-terminal domains interacting with DAG and PtdOH, enabling function at ER-PM contact zones. VAP-B mutations found in familial ALS impair Nir2 binding. |
Domain mapping, FFAT-VAP interaction assays, co-immunoprecipitation, lipid-binding assays, knockdown |
Biochemical Society transactions |
Medium |
26862206
|
| 2013 |
Nir2 translocates from the Golgi complex to the plasma membrane in response to growth factor stimulation. This translocation is triggered by phosphatidic acid (PA) formation and mediated by the C-terminal region of Nir2, which binds PA in vitro. Nir2 depletion substantially reduces PM PI(4,5)P2 levels and growth factor-stimulated PI(3,4,5)P3 production, and attenuates MAPK and PI3K/AKT pathway activation. |
PA-binding assay (in vitro), siRNA knockdown, PIP2/PIP3 reporter imaging, western blotting of pathway components |
EMBO reports |
Medium |
23897088
|
| 2005 |
Nir2 is a peripheral Golgi protein essential for maintaining DAG levels in the Golgi apparatus. RNAi-mediated depletion of Nir2 inhibits protein transport from the trans-Golgi network to the plasma membrane and reduces Golgi DAG levels. Inactivation of the CDP-choline pathway for phosphatidylcholine biosynthesis restores both effects, indicating that Nir2 maintains the Golgi DAG pool by regulating its consumption via the CDP-choline pathway. |
RNAi knockdown, DAG reporter assays, protein transport assays, genetic epistasis (CDP-choline pathway inhibition rescue) |
Nature cell biology |
High |
15723057
|
| 2004 |
At the onset of mitosis, Cdk1 phosphorylates Nir2 at multiple sites, with S382 as the most prominent. This phosphorylation facilitates Nir2 dissociation from the Golgi apparatus. Phospho-Nir2(pS382) localizes to the cleavage furrow and midbody during cytokinesis. The mitotic phosphorylation of Nir2 creates a docking site for the Polo box domain of Plk1, and overexpression of a Nir2 mutant that cannot interact with Plk1 affects cytokinesis completion. |
In vitro kinase assay (Cdk1), mass spectrometry of phosphorylation sites, immunolocalization, Co-IP of Nir2 and Plk1, overexpression of Nir2 phospho-mutants, cytokinesis completion assay |
Molecular cell |
High |
15125835
|
| 2002 |
Nir2 is essential for cytokinesis: microinjection of anti-Nir2 antibodies into interphase cells blocks cytokinesis, resulting in multinucleate cells. Nir2 translocates from the Golgi to the cleavage furrow and midbody during cytokinesis, where it co-localizes and associates with RhoA. An N-terminally truncated Nir2 mutant causes cleavage furrow regression. The Rho-inhibitory domain (Rid) of Nir2 causes aberrant ingression and ectopic cleavage sites. |
Antibody microinjection, immunolocalization, Co-IP with RhoA in mitotic cells, overexpression of truncation mutants, time-lapse videomicroscopy |
Molecular and cellular biology |
High |
12077336
|
| 2002 |
Nir2 contains a Rho-inhibitory domain (Rid) in its N-terminal region that inhibits Rho-mediated stress fiber formation and LPA-induced RhoA activation. Biochemical studies showed that Nir2, via Rid, preferentially binds the inactive GDP-bound form of RhoA. Overexpression of Nir2 attenuates Rho-mediated neurite retraction in neuronal cells; microinjection of anti-Nir2 antibodies attenuates neurite extension. |
Biochemical pulldown (GDP- vs GTP-RhoA), antibody microinjection, overexpression of Rid domain, actin staining |
Molecular and cellular biology |
Medium |
11909959
|
| 2002 |
A T59E mutation in the PI-transfer domain of Nir2 (analogous to the dominant retinal degeneration mutation in Drosophila RdgB) targets Nir2 to lipid droplets. Wild-type Nir2 translocates to lipid droplets upon oleic acid treatment, an effect dependent on threonine phosphorylation within the PI-transfer domain; the T59A mutant does not translocate. A truncated Nir2T59E containing only the PI-transfer domain is sufficient for lipid droplet targeting. |
Site-directed mutagenesis, fluorescence microscopy with lipophilic dye Nile red, oleic acid treatment, phosphorylation analysis |
Current biology : CB |
Medium |
12225667
|
| 2019 |
Nir2 acts as an effector of ER-resident VAP proteins (VAPA and VAPB) to support hepatitis C virus replication. Nir2 replenishes phosphoinositides at the HCV replication organelle to maintain elevated steady-state PI(4)P levels, which are removed by OSBP. Nir2 interacts with VAPs and completes a phosphoinositide cycle (PI/PA exchange) between the ER and viral replication organelles. |
siRNA knockdown, Co-IP of Nir2 with VAPs, PI(4)P reporter assays, HCV replication assays |
Journal of virology |
Medium |
31484747
|
| 2022 |
Nir1 constitutively localizes at ER-PM junctions (unlike Nir2 and Nir3 which are dynamically recruited) and acts as a positive regulator of Nir2 recruitment to ER-PM junctions during receptor stimulation. Nir1 interacts with Nir2 via a region between the FFAT motif and the DDHD domain. Loss of Nir1 reduces Nir2 targeting to ER-PM junctions and impairs efficient PM PIP2 replenishment. |
Live-cell imaging, biochemical co-immunoprecipitation, domain mapping, siRNA knockdown, PIP2 reporter assays |
Molecular biology of the cell |
Medium |
35020418
|
| 2023 |
PITPNM1 (Nir2) and PITPNM2 (Nir3) maintain PI(4,5)P2 homeostasis at phagocytic cups, thereby supporting actin contractility and phagosome sealing. CRISPR-Cas9 double knockout of Nir2 and Nir3 decreases PM PI(4,5)P2, impairs receptor-mediated phagocytosis (stalling at cup stage), reduces density of contractile actin rings, and causes repetitive abortive phagosome closure. Re-expression of either Nir2 or Nir3 rescued phagocytosis proportionally to PM PI(4,5)P2 restoration. |
CRISPR-Cas9 knockout, live-cell imaging, PI(4,5)P2 reporters, phagocytosis assays, actin dynamics imaging, rescue experiments |
Journal of cell science |
High |
37376972
|
| 2025 |
Nir2 knockdown in HUVECs inhibits angiogenic tube formation, reduces cell viability, proliferation, and migration, diminishes actin stress fibers, and decreases AKT and ERK signaling downstream of VEGF. Nir2 overexpression increases cell viability and shRNA-resistant Nir2 rescues knockdown effects. Co-immunoprecipitation and co-localization confirmed Nir2 interaction with VAPA; double knockdown of Nir2 and VAPA further inhibits angiogenesis. |
siRNA knockdown, overexpression rescue, Co-IP and co-localization (Nir2-VAPA), interactome (mass spectrometry), tube formation assay, cell viability/migration assays, AKT/ERK phosphorylation |
Biochimica et biophysica acta. Molecular cell research |
Medium |
40010513
|
| 2014 |
Nir2 enhances epithelial-mesenchymal transition (EMT) in mammary epithelial and breast cancer cells. Nir2 overexpression decreases epithelial markers and increases mesenchymal markers; shRNA silencing has opposite effects. Nir2 depletion attenuates growth factor-induced cell migration and invasion in vitro, and inhibits lung metastasis in animal models. EMT effects are mediated through the PI3K/AKT and ERK1/2 pathways. |
shRNA knockdown, overexpression, EMT marker immunoblotting, cell migration/invasion assays, in vivo lung metastasis model, pathway inhibitor assays |
Journal of cell science |
Medium |
25179602
|
| 2013 |
Pitpnm1 is expressed in inner hair cells of the organ of Corti from late embryonic stages to adulthood and transiently in outer hair cells during early postnatal stages. Pitpnm1 null mice showed no hearing defects, suggesting functional redundancy with Pitpnm2 and Pitpnm3. |
Expression analysis (in situ hybridization/immunostaining), Pitpnm1 knockout mouse, auditory brainstem response/DPOAE hearing tests |
Neuroscience |
Medium |
23820044
|
| 2020 |
miR-490-5p targets PITPNM1 by binding its 3'-UTR and inhibiting its translation, as demonstrated by dual-luciferase reporter assay. PITPNM1 promotes hADSC chondrogenic differentiation and chondrocyte homeostasis via the PI3K/AKT signaling pathway; rescue experiments confirmed this miR-490-5p/PITPNM1/PI3K/AKT axis. |
Dual-luciferase reporter assay (3'-UTR binding), loss/gain-of-function experiments, PI3K/AKT pathway analysis, rescue experiments, in vivo DMM OA model |
Frontiers in cell and developmental biology |
Medium |
33240879
|