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Showing SYNE3NESP3 is a alias.

SYNE3

Nesprin-3 · UniProt Q6ZMZ3

Length
975 aa
Mass
112.2 kDa
Annotated
2026-06-10
10 papers in source corpus 9 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Nesprin-3 (SYNE3) is an outer nuclear membrane component of the LINC complex that couples the nucleus to the intermediate filament cytoskeleton, thereby maintaining perinuclear cytoskeletal architecture, nuclear shape, and mechanotransduction (PMID:16330710, PMID:21937718). Unlike actin-binding nesprins, it lacks an actin-binding domain and instead recruits the plakin crosslinker plectin to the nuclear perimeter, connecting the nucleus to the intermediate filament network (PMID:16330710). Its retention at the outer nuclear membrane requires the C-terminal KASH domain, whose terminal residues mediate interaction with Sun1 and Sun2 at the inner nuclear membrane; loss of these residues or of Sun proteins redistributes nesprin-3 to the ER (PMID:17881500). The plectin interaction depends on plectin dimerization and on specific residues (R43, L44) in nesprin-3's first spectrin repeat, and in vivo loss of nesprin-3 reduces perinuclear concentration of intermediate filaments and displaces plectin and vimentin from the nuclear envelope (PMID:17881500, PMID:21303928, PMID:23761073). Functionally, nesprin-3 is required for centrosome attachment to the nuclear envelope, flow-induced polarization and migration in endothelial cells, and for transmitting vimentin-borne forces that set nuclear envelope tension and resist nuclear deformation (PMID:21937718, PMID:42168662, PMID:39554181). In oncogenic KRAS pancreatic cancer cells, KLF5-driven SYNE3 upregulation supports an Emerin–nesprin-3 interaction required for mKRAS-induced nuclear morphology changes and proliferation (PMID:42175908). Notably, nesprin-3 knockout mice are fertile with normal Sertoli cell nuclear positioning, indicating the nesprin-3–plectin–IF link is dispensable for some developmental contexts (PMID:23761073).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2005 High

    Established that an outer nuclear membrane nesprin could link the nucleus to the cytoskeleton independently of actin, defining nesprin-3 as the intermediate-filament arm of nuclear-cytoskeletal coupling.

    Evidence Protein isolation, overexpression, colocalization, and co-IP showing plectin recruitment to the nuclear perimeter with keratins

    PMID:16330710

    Open questions at the time
    • Did not define how nesprin-3 itself is anchored at the nuclear envelope
    • Functional consequence of the IF link for nuclear behavior not tested
  2. 2007 High

    Defined the molecular basis for nesprin-3 anchoring and its plectin interaction, placing nesprin-3 within the LINC complex via KASH-Sun coupling.

    Evidence Deletion mutagenesis, siRNA knockdown of Sun proteins, and co-IP in cultured cells

    PMID:17881500

    Open questions at the time
    • In vivo relevance of the KASH-Sun interaction not established
    • Functional role of actin-regulated plectin binding unclear
  3. 2011 Medium

    Demonstrated a cellular function for nesprin-3 in endothelial mechanobiology, linking it to centrosome anchoring and flow-induced polarization and migration.

    Evidence siRNA knockdown with live imaging and flow-chamber assays in human aortic endothelial cells

    PMID:21937718

    Open questions at the time
    • Single-lab knockdown without genetic confirmation
    • Mechanism connecting nesprin-3 to centrosome positioning not resolved
  4. 2011 High

    Pinpointed the spectrin-repeat residues required for plectin binding and confirmed in vivo that nesprin-3 concentrates intermediate filaments around the nucleus.

    Evidence Zebrafish loss-of-function, residue-level mutagenesis, and co-IP

    PMID:21303928

    Open questions at the time
    • Overlap with integrin-binding plectin residues raises competition questions not resolved
    • Physiological consequence of reduced perinuclear IF in zebrafish unclear
  5. 2011 Low

    Extended nesprin-3 connectivity to microtubules via BPAG1 and MACF, broadening the cytoskeletal systems it could bridge.

    Evidence Interaction studies cited in a review synthesis

    PMID:22103514

    Open questions at the time
    • Reported in review without primary experimental detail in the source
    • No functional consequence of microtubule linkage demonstrated
  6. 2013 High

    Tested organismal requirement for nesprin-3, showing it anchors plectin and vimentin at the nuclear envelope but is dispensable for fertility and fibroblast migration.

    Evidence Nesprin-3 knockout mouse, immunofluorescence, histology, and fertility assays

    PMID:23761073

    Open questions at the time
    • Redundancy with other nesprins not directly tested
    • Contexts where the IF link is non-redundant remain unidentified
  7. 2024 Medium

    Established nesprin-3 as the mechanical conduit through which vimentin sets nuclear envelope tension and protects against nuclear deformation.

    Evidence siRNA knockdown, vimentin-null cells, micropatterning, and FRET nuclear-envelope tension sensors

    PMID:39554181 PMID:42168662

    Open questions at the time
    • Single-lab mechanical readouts
    • Whether nesprin-3 binds vimentin directly or via plectin not disentangled here
  8. 2026 Medium

    Identified an Emerin–nesprin-3 interaction induced by oncogenic KRAS that is required for cancer-associated nuclear morphology and proliferation.

    Evidence BioID proximity labeling, transcriptomic/epigenomic profiling, knockdown, and interaction-deficient Emerin mutant rescue in pancreatic cancer cells

    PMID:42175908

    Open questions at the time
    • Single-lab finding limited to oncogenic KRAS context
    • Direct versus proximity-based nature of the Emerin interaction not fully resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How nesprin-3 integrates intermediate-filament, microtubule, and Emerin linkages to control nuclear shape and force transmission across normal tissues remains unresolved.
  • No structural model of the nesprin-3 LINC assembly
  • Tissue contexts where nesprin-3 is non-redundant unknown
  • Direct vimentin-binding interface uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 3 GO:0005198 structural molecule activity 2 GO:0060089 molecular transducer activity 2
Localization
GO:0005635 nuclear envelope 4 GO:0005783 endoplasmic reticulum 1
Complex memberships
LINC complex

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 Nesprin-3 is an outer nuclear membrane (ONM) protein that lacks an actin-binding domain and instead binds to the plakin family member plectin, which associates with the intermediate filament (IF) system. Overexpression of nesprin-3 recruits plectin to the nuclear perimeter, where both colocalize with keratin-6 and -14, suggesting a continuous connection between the nucleus and extracellular matrix through the IF cytoskeleton via plectin–integrin α6β4. Protein isolation, overexpression, colocalization by fluorescence microscopy, co-immunoprecipitation The Journal of cell biology High 16330710
2007 Nesprin-3α is retained at the ONM through its KASH domain: the last four amino acids of the KASH domain are essential for interaction with Sun1 and Sun2 at the inner nuclear membrane. Deletion of these amino acids or knockdown of Sun proteins redistributes nesprin-3α from the nuclear envelope to the ER. Plectin dimerization is required for its interaction with nesprin-3α, and this interaction is mediated by the N-terminal actin-binding domain (ABD) of plectin. The actin cytoskeleton influences binding of plectin dimers to nesprin-3α dimers. Deletion mutagenesis, siRNA knockdown, overexpression, co-immunoprecipitation, fluorescence microscopy Journal of cell science High 17881500
2011 Nesprin-3 localizes to the nuclear envelope in human aortic endothelial cells and is required for normal cell morphology, perinuclear cytoskeletal organization, centrosome attachment to the nuclear envelope, flow-induced centrosome polarization, and flow-induced cell migration. Nesprin-3 knockdown causes prominent cellular elongation and loss of centrosome anchoring. siRNA knockdown, fluorescence microscopy, live-cell imaging, flow-chamber assays Molecular biology of the cell Medium 21937718
2011 Nesprin-3 can connect the nucleus to microtubules indirectly through interactions with BPAG1 (bullous pemphigoid antigen 1) and MACF (microtubule-actin cross-linking factor), in addition to its known link to intermediate filaments via plectin. Binding/interaction studies (co-immunoprecipitation) cited in review synthesis Biochemical Society transactions Low 22103514
2011 In zebrafish, nesprin-3 augments peripheral nuclear localization of intermediate filaments; loss of nesprin-3 reduces concentration of intermediate filaments around the nucleus. Two nesprin-3 isoforms exist (α and β); residues R43 and L44 in the first spectrin repeat are required for plectin binding and nuclear envelope recruitment. Several plectin ABD residues critical for integrin β4 binding partially overlap with those required for nesprin-3α binding. Zebrafish loss-of-function (morpholino knockdown/knockout), mutagenesis, co-immunoprecipitation, fluorescence microscopy Journal of cell science High 21303928
2013 In nesprin-3 knockout mice, nesprin-3 is required for localization of plectin and vimentin to the nuclear perimeter of Sertoli cells. Without nesprin-3, plectin and vimentin are lost from the nuclear envelope in these cells. However, nesprin-3 knockout mice are fertile and show normal testicular morphology and Sertoli cell nuclear positioning, indicating the nesprin-3–plectin–IF link is dispensable for spermatogenesis. Nesprin-3 was also not required for polarization and migration of mouse embryonic fibroblasts. Nesprin-3 knockout mouse model, immunofluorescence, histology, fertility assays Molecular biology of the cell High 23761073
2024 Vimentin transmits forces to the nucleus through direct molecular linkages with nesprin-3 at the nuclear envelope. Loss of nesprin-3 phenocopies loss of vimentin in increasing nuclear deformation in geometrically constrained (micropatterned) cells. FRET-based tension sensors on the nuclear envelope show vimentin increases nuclear envelope tension, dependent on its coupling to the nucleus via nesprin-3. siRNA knockdown of nesprin-3, vimentin-null cells, micropatterned substrates, FRET tension sensors, fluorescence microscopy Scientific reports Medium 39554181 42168662
2026 Nesprin-3 is a novel binding partner of Emerin at the nuclear envelope in oncogenic KRAS (mKRAS) pancreatic cancer cells, identified by BioID proximity labeling. mKRAS increases SYNE3 expression via the transcription factor KLF5. Nesprin-3 knockdown impairs nuclear morphology, proliferation, and mKRAS-induced gene expression changes; nesprin-3 overexpression rescues nuclear morphology and proliferative phenotype when mKRAS is knocked down. An Emerin mutant unable to interact with nesprin-3 fails to rescue nuclear size changes, establishing that Emerin–Nesprin-3 interaction is required for mKRAS-induced nuclear morphology changes. BioID proximity labeling, transcriptomic/epigenomic analysis, siRNA knockdown, overexpression rescue, Emerin interaction-deficient mutant, nuclear morphometry Molecular and cellular biology Medium 42175908

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 Nesprin-3, a novel outer nuclear membrane protein, associates with the cytoskeletal linker protein plectin. The Journal of cell biology 389 16330710
2007 Requirements for the localization of nesprin-3 at the nuclear envelope and its interaction with plectin. Journal of cell science 140 17881500
2011 Nesprin-3 regulates endothelial cell morphology, perinuclear cytoskeletal architecture, and flow-induced polarization. Molecular biology of the cell 93 21937718
2013 Nesprin-3 connects plectin and vimentin to the nuclear envelope of Sertoli cells but is not required for Sertoli cell function in spermatogenesis. Molecular biology of the cell 73 23761073
2011 Nesprin-3: a versatile connector between the nucleus and the cytoskeleton. Biochemical Society transactions 47 22103514
2011 Nesprin-3 augments peripheral nuclear localization of intermediate filaments in zebrafish. Journal of cell science 43 21303928
2024 Vimentin molecular linkages with nesprin-3 enhance nuclear deformations by cell geometric constraints. bioRxiv : the preprint server for biology 1 39554181
2026 Vimentin molecular linkages with nesprin-3 enhance nuclear deformations by cell geometric constraints. Scientific reports 0 42168662
2026 A Novel Emerin/Nesprin-3 Interaction Mediates Nuclear Size Changes Induced by Oncogenic KRAS in Pancreatic Cancer Cells. Molecular and cellular biology 0 42175908
2024 Expression and clinical significance of SYNE3 in non-small cell lung cancer. American journal of translational research 0 39398556

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