Affinage

MNAT1

CDK-activating kinase assembly factor MAT1 · UniProt P51948

Length
309 aa
Mass
35.8 kDa
Annotated
2026-06-10
11 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MNAT1 (MAT1) is an assembly factor for the trimeric CDK-activating kinase (CAK) complex containing CDK7 and cyclin H, which associates with the TFIIH complex that operates in both transcription and DNA repair (PMID:9465303). Beyond this core role, MNAT1 has been characterized predominantly as a pro-tumorigenic regulator: it physically binds p53, enhances MDM2–p53 association, and promotes ubiquitin-dependent p53 degradation, thereby shortening p53 half-life and suppressing apoptosis to drive colorectal cancer growth (PMID:30477538). In cerebral endothelial cells, MNAT1 has a protective function, stabilizing the necroptosis regulator A20 and the Aβ-export component LRP1β against lysosomal degradation, so that its loss provokes blood–brain barrier damage, necroptosis, and Aβ accumulation (PMID:33296651). Its own transcription is epigenetically activated by SMYD2-catalyzed H3K36me2 deposition at the MNAT1 promoter (PMID:37232506).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 1998 Medium

    Established MNAT1 as the assembly-factor subunit (MAT1) of the CDK7–cyclin H CAK complex and placed the gene at chromosome 14q23, anchoring its identity in the transcription/DNA-repair machinery via TFIIH.

    Evidence FISH, somatic cell hybrid analysis, and YAC contig mapping; CAK composition from biochemical literature

    PMID:9465303

    Open questions at the time
    • Does not provide functional dissection of MNAT1's role within CAK beyond cited context
    • No structural basis for assembly defined here
  2. 2018 Medium

    Answered how MNAT1 promotes cancer cell survival by showing it physically binds p53 and accelerates its MDM2-dependent degradation, linking MNAT1 to apoptosis suppression independent of its canonical CAK role.

    Evidence Co-immunoprecipitation, p53 half-life Western blot, apoptosis flow cytometry, colony formation, and xenograft in colorectal cancer cells

    PMID:30477538

    Open questions at the time
    • Mechanism by which MNAT1 enhances MDM2–p53 binding not structurally resolved
    • Relationship to CAK/TFIIH function unaddressed
  3. 2020 Low

    Extended MNAT1's oncogenic role to PI3K/Akt/mTOR signaling, indicating it promotes proliferation and chemoresistance through a growth-signaling axis.

    Evidence siRNA knockdown, effector Western blots, proliferation/invasion assays, and xenograft in osteosarcoma cells

    PMID:33272245

    Open questions at the time
    • Pathway placement rests on downstream effector blotting without reconstitution or rescue
    • Direct molecular link between MNAT1 and PI3K not established
  4. 2020 Medium

    Revealed a protective, tissue-specific function distinct from cancer contexts: MNAT1 stabilizes A20 and LRP1β against lysosomal degradation in cerebral endothelium to prevent necroptosis and maintain Aβ clearance.

    Evidence Nat1-/- mice, AD models, AAV-mediated rescue, Western blot, BBB permeability and behavioral assays

    PMID:33296651

    Open questions at the time
    • Molecular mechanism by which MNAT1 prevents lysosomal degradation of A20/LRP1β not defined
    • Whether this requires CAK assembly activity unknown
  5. 2023 Medium

    Identified an upstream regulator of MNAT1 expression, showing SMYD2-catalyzed H3K36me2 at the promoter drives MNAT1 transcription, with MNAT1 acting downstream to activate PI3K/AKT in pancreatic cancer.

    Evidence ChIP for H3K36me2, luciferase reporter, knockdown/overexpression rescue, effector Western blots, and xenograft

    PMID:37232506

    Open questions at the time
    • Direct MNAT1–PI3K mechanistic link still inferred from effector readouts
    • Generality of SMYD2 regulation across tissues untested
  6. 2025 Low

    Proposed a further oncogenic effector arm in which MNAT1 binds GDF15 and modulates mitochondrial apoptosis via AMPK signaling.

    Evidence Co-immunoprecipitation, RNA-seq, ROS/JC-1/mitochondrial assays, and cisplatin xenograft in laryngeal squamous cell carcinoma

    PMID:40651179

    Open questions at the time
    • AMPK pathway placement relies on downstream readouts without reconstitution
    • GDF15 interaction lacks reciprocal/structural validation
  7. 2025 Low

    Linked MNAT1 to TDP-43 proteinopathy by showing TDP-43 dysfunction generates a cryptic-exon-containing aberrant MNAT1 transcript detectable in ALS/FTD patients.

    Evidence Long- and short-read RNA-seq in iPSC-derived motor neurons with patient-sample validation

    PMID:40670663

    Open questions at the time
    • Functional consequence of the aberrant MNAT1 isoform not established
    • Whether mis-splicing alters MNAT1 protein activity unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How MNAT1's canonical CAK/TFIIH assembly role mechanistically connects to its diverse context-specific functions (p53 degradation, protein stabilization, growth signaling) remains unresolved.
  • No structural model linking CAK assembly to non-canonical partner binding
  • Whether CAK kinase activity is required for cancer or endothelial roles untested
  • Mechanism of MNAT1-dependent control of protein stability undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0140096 catalytic activity, acting on a protein 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-73894 DNA Repair 1 R-HSA-74160 Gene expression (Transcription) 1
Complex memberships
CDK7–cyclin H–MAT1 CAK complexTFIIH

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 MNAT1 (MAT1) functions as an assembly factor for the CDK-activating kinase (CAK) complex, which contains CDK7, cyclin H, and MAT1; this trimeric complex is tightly associated with the multiprotein TFIIH complex that plays dual roles in transcription and DNA repair. The human MNAT1 gene was mapped to chromosome band 14q23 by FISH, somatic cell hybrid analysis, and YAC contig mapping. Fluorescence in situ hybridization, somatic cell hybrid analysis, YAC contig mapping; complex composition referenced from biochemical literature Genomics Medium 9465303
2018 MNAT1 physically interacts with p53 (shown by co-immunoprecipitation), enhances the interaction of MDM2 with p53, mediates p53 ubiquitin-dependent degradation, shortens p53 half-life, and reduces p53 protein stability, thereby promoting colorectal cancer cell growth and inhibiting apoptosis. Co-immunoprecipitation, Western blot (p53 stability/half-life), flow cytometry (apoptosis), MTT/colony formation, in vivo xenograft Journal of experimental & clinical cancer research : CR Medium 30477538
2020 MNAT1 silencing in osteosarcoma cells reduces activation of the PI3K/Akt/mTOR pathway, and this pathway mediates MNAT1's promotion of OS cell proliferation and cisplatin resistance. siRNA knockdown, Western blot (PI3K/Akt/mTOR effectors), CCK8/colony formation assay, transwell assay, in vivo xenograft BMC cancer Low 33272245
2020 Decreased mNAT1 expression in cerebral endothelial cells induces lysosomal degradation of A20 (a necroptosis regulator) and LRP1β (a component of the LRP1 complex that exports Aβ), leading to blood-brain barrier damage and endothelial necroptosis; AAV-mediated restoration of mNAT1 in cerebral ECs rescues A20 and LRP1β levels, inhibits necroptosis, reduces Aβ deposits, and improves cognitive function. Nat1-/- mice, AD mouse models, AAV-mediated rescue, Western blot, behavioral assays, BBB permeability assays Cell reports Medium 33296651
2023 SMYD2 methyltransferase catalyzes H3K36me2 modification at the MNAT1 promoter to upregulate MNAT1 transcription; elevated MNAT1 in turn activates PI3K/AKT signaling to promote pancreatic adenocarcinoma tumorigenesis, and MNAT1 overexpression rescues the suppressed malignant phenotype caused by SMYD2 knockdown. Chromatin immunoprecipitation (H3K36me2 at MNAT1 promoter), luciferase reporter assay, siRNA/overexpression, Western blot (PI3K/AKT effectors), in vivo xenograft Histology and histopathology Medium 37232506
2025 MNAT1 physically interacts with GDF15 (by co-immunoprecipitation); MNAT1 promotes LSCC cell proliferation, migration, and invasion through GDF15, and further affects mitochondrial apoptosis via the AMPK pathway. MNAT1 knockdown increases cisplatin sensitivity both in vitro and in vivo. Co-immunoprecipitation, RNA-seq (downstream gene prediction), ROS/JC-1/lysosomal-mitochondrial activity assays, in vivo xenograft with cisplatin Translational oncology Low 40651179
2025 TDP-43 dysfunction leads to inclusion of a novel cryptic exon in MNAT1 pre-mRNA in human iPSC-derived motor neurons, generating aberrant MNAT1 transcripts; this cryptic exon is detectable in ALS and FTD patient samples, implicating MNAT1 splicing disruption in TDP-43 proteinopathy. Long-read RNA-seq (IsoRefiner method), short-read RNA-seq, validation in patient samples (ALS/FTD) Communications biology Low 40670663

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Reduction of mNAT1/hNAT2 Contributes to Cerebral Endothelial Necroptosis and Aβ Accumulation in Alzheimer's Disease. Cell reports 44 33296651
2020 MNAT1 promotes proliferation and the chemo-resistance of osteosarcoma cell to cisplatin through regulating PI3K/Akt/mTOR pathway. BMC cancer 21 33272245
2020 The regulatory effect of has-circ-0001146/miR-26a-5p/MNAT1 network on the proliferation and invasion of osteosarcoma. Bioscience reports 12 32453410
2018 MNAT1 is overexpressed in colorectal cancer and mediates p53 ubiquitin-degradation to promote colorectal cancer malignance. Journal of experimental & clinical cancer research : CR 11 30477538
2023 Epigenetic upregulation of MNAT1 by SMYD2 is linked to PI3K/AKT activation and tumorigenesis of pancreatic adenocarcinoma. Histology and histopathology 7 37232506
1998 Mapping of the human genes encoding cyclin H (CCNH) and the CDK-activating kinase (CAK) assembly factor MAT1 (MNAT1) to chromosome bands 5q13.3-q14 and 14q23, respectively. Genomics 6 9465303
2014 An intragenic deletion of the gene MNAT1 in a family with pectus deformities. American journal of medical genetics. Part A 4 24664931
2025 Long-read RNA sequencing unveils a novel cryptic exon in MNAT1 along with its full-length transcript structure in TDP-43 proteinopathy. Communications biology 3 40670663
2019 [MNAT1 expression in non-small cell lung cancer and its biological cellular impact]. Zhonghua bing li xue za zhi = Chinese journal of pathology 2 31422594
2025 Mitochondrial apoptosis induced by MNAT1 in laryngeal squamous cell carcinoma cells reverses drug resistance. Translational oncology 0 40651179
2025 Integrating scRNA-seq and machine learning identifies MNAT1 as a therapeutic target in OSCC. Frontiers in immunology 0 41235252

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