Affinage

MBIP

MAP3K12-binding inhibitory protein 1 · UniProt Q9NS73

Length
344 aa
Mass
39.3 kDa
Annotated
2026-06-10
32 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MBIP is a dual-function protein that operates both as a structural component of the metazoan ATAC histone acetyltransferase complex and as a regulator of stress-activated MAP kinase signaling (PMID:18838386, PMID:22345504). It was first defined biochemically through its direct physical interaction with the leucine-zipper-like motif of the MAP3K MUK/DLK/ZPK (MAP3K12), where binding inhibits MAP3K12-driven JNK/SAPK activation in a kinase-specific manner (PMID:10801814). MBIP is a stable subunit of the human ATAC complex assembled around the GCN5/PCAF acetyltransferases, ADA2-A, ADA3, WDR5, and additional histone-fold subunits that engage TBP, and its N-terminal region is derived from the MoaE molybdopterin synthase subunit but has lost catalytic residues, repurposing this fold as a non-catalytic MAPK-regulatory module within ATAC (PMID:18838386, PMID:22345504). In cancer, MBIP acts as a pro-metastatic effector: in non-small-cell lung carcinoma it activates the JNK pathway and induces matrix metalloproteinase expression to drive proliferation, migration, invasion, and metastasis (PMID:32963352), and in esophageal squamous cell carcinoma it promotes JNK and p38 phosphorylation to trigger epithelial-mesenchymal transition and metastasis (PMID:38199596). Beyond these MAPK-linked roles and its ATAC membership, the biochemical mechanism by which MBIP integrates chromatin acetylation and kinase regulation has not been resolved in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2000 Medium

    Established MBIP's founding molecular activity by showing it directly binds a specific MAP3K and selectively dampens stress-induced JNK signaling, defining it as a kinase-binding inhibitory protein rather than a general signaling modulator.

    Evidence Co-immunoprecipitation and JNK/SAPK kinase activity assays in 293T cells with COT/Tpl-2 specificity control

    PMID:10801814

    Open questions at the time
    • Inhibition was only partial and tested by overexpression, not endogenous loss-of-function
    • No structural basis for leucine-zipper binding determined
    • Did not connect MBIP to any chromatin role
  2. 2008 High

    Reframed MBIP as a bona fide subunit of the ATAC histone acetyltransferase complex, revealing a chromatin-associated context independent of its prior MAPK role.

    Evidence Biochemical purification of human ATAC followed by mass spectrometry subunit identification and TBP interaction characterization

    PMID:18838386

    Open questions at the time
    • Did not define MBIP's specific contribution to ATAC acetyltransferase activity or assembly
    • Relationship between ATAC membership and MAP3K12 inhibition left unaddressed
  3. 2012 Medium

    Reconciled the two functions by mapping the MAPK-regulatory determinants to MBIP's MoaE-derived N-terminal region and showing the fold is catalytically dead, establishing a non-catalytic, repurposed domain within ATAC.

    Evidence Drosophila ortholog (CG10238/dMoaE) interaction assays, ATAC proteomics, and mutagenesis-based domain mapping with cross-metazoan sequence analysis

    PMID:22345504

    Open questions at the time
    • Mechanistic link between the MoaE-derived domain and JNK inhibition not biochemically resolved
    • Based on Drosophila ortholog
    • How ATAC incorporation gates MAPK regulation unknown
  4. 2018 Low

    Implicated MBIP in regulating expression of the neighboring gene NKX2-1, raising a possible chromatin/regulatory role in disease, though through indirect genetic evidence.

    Evidence Array CGH deletion mapping and transcript quantification in fibroblasts from a single benign hereditary chorea family

    PMID:29621620

    Open questions at the time
    • Single family with indirect transcript-level evidence only
    • Causality between MBIP deletion and NKX2-1 reduction not mechanistically established
    • Possible positional/regulatory artifact not excluded
  5. 2020 Medium

    Inverted the original inhibitory model in a disease context by showing MBIP drives, rather than suppresses, JNK signaling to promote an invasive MMP-dependent metastatic phenotype in lung cancer.

    Evidence Gain- and loss-of-function in NSCLC lines, in vivo metastasis assays, JNK and MMP readouts with rescue

    PMID:32963352

    Open questions at the time
    • Molecular basis for activating rather than inhibiting JNK not defined
    • Role of ATAC membership in this phenotype untested
    • Single cancer-type, single lab
  6. 2024 Medium

    Extended the pro-metastatic MAPK role to a second tumor type, showing MBIP activates both JNK and p38 to drive EMT, reinforcing a context-dependent activating function.

    Evidence RNA-seq, western blotting, Transwell assays, mouse xenografts, and pathway-inhibitor rescue in ESCC

    PMID:38199596

    Open questions at the time
    • Direct biochemical mechanism of JNK/p38 activation not shown
    • Does not reconcile activating versus inhibitory effects on the same pathway
    • Contribution of ATAC acetyltransferase activity not separated from MAPK effects

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unresolved how MBIP's MoaE-derived non-catalytic domain mechanistically toggles between inhibiting and activating stress MAPK signaling, and how this is coupled to its function within the ATAC histone acetyltransferase complex.
  • No structural or biochemical model explains the inhibitory-to-activating switch across cell contexts
  • The functional interplay between ATAC membership and MAP3K binding is uncharacterized
  • No defined substrate or chromatin target attributable specifically to MBIP

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-4839726 Chromatin organization 2
Partners
Complex memberships
ATAC histone acetyltransferase complex

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 MBIP (MUK-binding inhibitory protein) physically interacts with the leucine-zipper-like motif of MUK/DLK/ZPK (MAP3K12) and inhibits its ability to activate JNK/SAPK signaling. Overexpression of MBIP partially inhibits JNK activation by hyperosmotic stress (0.3 M sorbitol) in 293T cells. The inhibitory effect was specific to MUK/DLK/ZPK and was not observed with another JNK-activating MAPKKK, COT/Tpl-2. Co-immunoprecipitation/protein interaction assay, overexpression in 293T cells with JNK/SAPK activity assay, specificity controls with COT/Tpl-2 The Journal of biological chemistry Medium 10801814
2008 MBIP (MAP3K12 binding inhibitory protein) is a component of the human ATAC (Ada Two-A containing) histone acetyltransferase complex, which contains GCN5 or PCAF along with ADA2-A, ADA3, STAF36, WDR5, POLE3/CHRAC17, POLE4, TAK1/MAP3K7, YEATS2-NC2beta, and other subunits. The complex interacts with TBP via the YEATS2-NC2beta histone fold module. Biochemical purification of ATAC complex followed by mass spectrometry identification of subunits; functional characterization of TBP interaction The Journal of biological chemistry High 18838386
2012 The Drosophila homolog of MBIP (CG10238/dMoaE) functions as a subunit of the ATAC histone acetyltransferase complex and inhibits JNK activation. The MoaE-related N-terminal region of MBIP contains sequence determinants responsible for regulating MAPK signaling. MBIP protein sequences across metazoa have an N-terminal region derived from MoaE (molybdopterin synthase large subunit) but have lost residues responsible for catalytic activity, indicating a non-catalytic role in MAPK signaling as part of ATAC. Biochemical interaction assays (dMoaE with dMoaD and with itself), mass spectrometry-based proteomics of ATAC complex subunits, sequence analysis with mutagenesis-based functional mapping of MAPK regulatory determinants Molecular & cellular proteomics : MCP Medium 22345504
2020 MBIP expression in NSCLC cells promotes cellular proliferation, migration, invasion in vitro and metastasis in vivo. Mechanistically, MBIP mediates activation of the JNK pathway and induces expression of matrix metalloproteinases (MMPs), which are required for the invasive and metastatic phenotype. Gain-of-function and loss-of-function experiments in NSCLC cell lines (migration/invasion assays), in vivo metastasis assays, JNK pathway activation assays, MMP expression analysis, rescue experiments Oncogene Medium 32963352
2024 MBIP promotes metastasis in esophageal squamous cell carcinoma (ESCC) by activating the MAPK pathway, specifically through phosphorylation of JNK and p38, leading to epithelial-mesenchymal transition (EMT). MBIP is a component of the ATAC (Ada2A-containing) complex. RNA-seq, qRT-PCR, western blotting, Transwell migration/invasion assays, mouse xenograft assay, rescue experiments with pathway inhibitors Cellular signalling Medium 38199596
2018 MBIP deletion (without deletion of NKX2-1) in a three-generation family with benign hereditary chorea leads to reduced NKX2-1 transcript levels in patient fibroblasts compared to controls, suggesting MBIP deletion affects NKX2-1 expression and mimics NKX2-1 haploinsufficiency. Array CGH for genomic deletion mapping, RT-PCR/transcript quantification in patient fibroblasts versus controls European journal of medical genetics Low 29621620
2008 Mbip expression in the developing mouse forebrain is enriched in the medial ganglionic eminence (MGE) progenitor population. This expression is lost when MGE cells are propagated as neurospheres, indicating that the forebrain-extrinsic signals are required for this expression pattern. In situ hybridization in wild-type and mutant (Pax6Sey/Sey, Shh-/-, Gli3XtJ/XtJ) forebrain tissue; neurosphere assay comparison The Journal of neuroscience : the official journal of the Society for Neuroscience Low 18799682

Source papers

Stage 0 corpus · 32 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 Long-term caloric restriction ameliorates the decline in diastolic function in humans. Journal of the American College of Cardiology 278 16412867
2013 A 12-gene set predicts survival benefits from adjuvant chemotherapy in non-small cell lung cancer patients. Clinical cancer research : an official journal of the American Association for Cancer Research 252 23357979
2008 Human ATAC Is a GCN5/PCAF-containing acetylase complex with a novel NC2-like histone fold module that interacts with the TATA-binding protein. The Journal of biological chemistry 176 18838386
2014 Comprehensive genotyping and clinical characterisation reveal 27 novel NKX2-1 mutations and expand the phenotypic spectrum. Journal of medical genetics 74 24714694
2018 Genome-Wide Association Studies of Autoimmune Thyroid Diseases, Thyroid Function, and Thyroid Cancer. Endocrinology and metabolism (Seoul, Korea) 68 29947174
2008 Molecular specification and patterning of progenitor cells in the lateral and medial ganglionic eminences. The Journal of neuroscience : the official journal of the Society for Neuroscience 42 18799682
2010 Both gene amplification and allelic loss occur at 14q13.3 in lung cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 40 21148747
2000 MAPK upstream kinase (MUK)-binding inhibitory protein, a negative regulator of MUK/dual leucine zipper-bearing kinase/leucine zipper protein kinase. The Journal of biological chemistry 38 10801814
2023 Fathers' preconception smoking and offspring DNA methylation. Clinical epigenetics 32 37649101
2001 Identification of target genes within an amplicon at 14q12-q13 in esophageal squamous cell carcinoma. Genes, chromosomes & cancer 31 11550278
2004 The mouse FKBP23 binds to BiP in ER and the binding of C-terminal domain is interrelated with Ca2+ concentration. FEBS letters 30 14960307
2016 Papillary Thyroid Carcinoma: Association Between Germline DNA Variant Markers and Clinical Parameters. Thyroid : official journal of the American Thyroid Association 29 27342578
2014 Fabrication of DNA, o-phenylenediamine, and gold nanoparticle bioimprinted polymer electrochemical sensor for the determination of dopamine. Biosensors & bioelectronics 24 25499662
2022 Comparative Studies on DNA-Binding Mechanisms between Enantiomers of a Polypyridyl Ruthenium(II) Complex. The journal of physical chemistry. B 16 35731588
2020 MBIP (MAP3K12 binding inhibitory protein) drives NSCLC metastasis by JNK-dependent activation of MMPs. Oncogene 16 32963352
2007 The binding of FKBP23 to BiP modulates BiP's ATPase activity with its PPIase activity. Biochemical and biophysical research communications 14 17223077
2018 Genome-Wide Association Study Reveals Distinct Genetic Susceptibility of Thyroid Nodules From Thyroid Cancer. The Journal of clinical endocrinology and metabolism 13 30099483
2017 A further case of brain-lung-thyroid syndrome with deletion proximal to NKX2-1. European journal of medical genetics 13 28286255
2014 Genome-wide pathway analysis of breast cancer. Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 13 24805830
2018 Benign hereditary chorea and deletions outside NKX2-1: What's the role of MBIP? European journal of medical genetics 9 29621620
2012 A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component. Molecular & cellular proteomics : MCP 9 22345504
2021 Gene network and biological pathways associated with susceptibility to differentiated thyroid carcinoma. Scientific reports 8 33903625
2019 Modified benzoxazolone (ABO-AA) based single photon emission computed tomography (SPECT) probes for 18 kDa translocator protein. Drug development research 7 31184784
2020 Pathway-Affecting Single Nucleotide Polymorphisms (SNPs) in RPS6KA1 and MBIP Genes are Associated with Breast Cancer Risk. Asian Pacific journal of cancer prevention : APJCP 6 32711446
2017 Association of Established Thyroid-stimulating Hormone and Free Thyroxine Genetic Variants with Hashimoto's Thyroiditis. Immunological investigations 6 28753406
2015 Systemic gene transfer of binding immunoglobulin protein (BiP) prevents disease progression in murine collagen-induced arthritis. Clinical and experimental immunology 5 25228326
2014 Electrochemical detection of DNA binding by tumor suppressor p53 protein using osmium-labeled oligonucleotide probes and catalytic hydrogen evolution at the mercury electrode. Analytical and bioanalytical chemistry 4 25056872
2022 Risk genetic polymorphism and haplotype associated with papillary thyroid cancer and their relation to associated diseases in Slovak population. Bratislavske lekarske listy 3 35907052
2018 Dual redox labeling of DNA as a tool for electrochemical detection of p53 protein-DNA interactions. Analytica chimica acta 3 30661579
2024 MBIP promotes ESCC metastasis by activating MAPK pathway. Cellular signalling 1 38199596
2026 Multicenter Retrospective Study of Musculoskeletal Bacterial Infections of the Pelvis in Children and Factors Associated With the Formation of an Abscess. The Pediatric infectious disease journal 0 41728860
2025 Proteomic landscape of porcine induced neural stem cell reprogramming and differentiation. PeerJ 0 41059408

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