Affinage

LYZ

Lysozyme C · UniProt P61626

Length
148 aa
Mass
16.5 kDa
Annotated
2026-06-10
12 papers in source corpus 3 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

LYZ (lysozyme) is classically a secretory antimicrobial muramidase, but the available corpus characterizes additional muramidase-independent activities in cancer and host-pathogen interactions (PMID:37428911, PMID:40253018). In hepatocellular carcinoma, LYZ promotes tumor cell proliferation and migration in both autocrine and paracrine fashion independently of its enzymatic activity, signaling through cell-surface GRP78 (csGRP78) to activate pro-tumoral pathways; its expression in this context is driven by STAT3 activation (PMID:37428911). In the antiviral setting, LYZ acts as a pro-viral host factor: it binds porcine epidemic diarrhea virus NSP8 via its N-terminal domain and downregulates RIG-I transcripts through the m6A reader YTHDF2, thereby blunting IRF3 phosphorylation and nuclear translocation and suppressing IFN-β production (PMID:40253018). Consistent with its classical antibacterial role, host DNA damage responses during typhoid fever trigger LYZ secretion, and secreted LYZ inhibits Salmonella virulence effector secretion and induces bacterial spheroplast formation. Beyond these contexts, no further mechanistic detail has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2020 Low

    Linked intestinal LYZ levels to Paneth cell integrity and gut homeostasis, establishing that LYZ expression tracks with Paneth cell populations and influences microbiota and inflammation under estrogen deficiency.

    Evidence Ovariectomy rat osteoporosis model with Paneth cell histology, LYZ quantification, and gut microbiota/cytokine profiling

    PMID:33382620

    Open questions at the time
    • Associative rodent model with no direct reconstitution of LYZ function
    • Does not establish whether LYZ is causal versus a marker of Paneth cell loss
    • No molecular mechanism linking LYZ to microbiota or inflammation
  2. 2023 Medium

    Revealed a non-canonical, enzyme-independent pro-tumoral function of LYZ, answering whether lysozyme acts only as a muramidase or also as a signaling ligand in cancer.

    Evidence Knockdown/knockout and overexpression in HCC cells with subcutaneous and orthotopic xenografts in NOD/SCID mice; pathway placement through csGRP78 and STAT3-regulated expression

    PMID:37428911

    Open questions at the time
    • Downstream csGRP78-activated signaling effectors not fully resolved
    • Single lab; muramidase-independence shown but structural basis of csGRP78 binding undefined
    • Generality beyond HCC not established
  3. 2025 Medium

    Defined LYZ as a pro-viral host factor that suppresses innate immune signaling, addressing how a viral protein might co-opt LYZ to evade interferon responses.

    Evidence IP-MS and reciprocal co-IP with PEDV NSP8, confocal colocalization, domain-deletion mapping, and viral replication/IRF3 phosphorylation/IFN-β readouts

    PMID:40253018

    Open questions at the time
    • Mechanism by which LYZ-NSP8 interaction triggers YTHDF2-mediated RIG-I transcript degradation not resolved
    • Single lab; whether endogenous LYZ recapitulates the effect in vivo unclear
    • Relevance to human viral infections not tested
  4. 2024 Medium

    Connected host DNA damage signaling to LYZ secretion and demonstrated a direct antibacterial action against Salmonella, clarifying how the classical antimicrobial role is regulated during systemic infection.

    Evidence Plasma proteomics from bacteraemic participants, recombinant typhoid toxin treatment, and recombinant LYZ bacterial morphology and effector-secretion assays (preprint)

    Open questions at the time
    • Preprint; not yet peer-reviewed
    • ATM/ATR-to-secretion signaling steps not mechanistically dissected
    • Whether spheroplast formation reflects muramidase activity or another mechanism not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How LYZ's muramidase-independent signaling functions mechanistically integrate with its classical enzymatic antimicrobial role across tissues remains unresolved.
  • No unifying model linking enzymatic and non-enzymatic activities
  • Structural basis of csGRP78 and NSP8 binding undefined
  • Tissue- and context-specific regulation of LYZ secretion not characterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 1 GO:0140096 catalytic activity, acting on a protein 1
Localization
GO:0005576 extracellular region 1 GO:0005886 plasma membrane 1
Pathway
R-HSA-168256 Immune System 2
Partners

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 LYZ promotes HCC cell proliferation and migration in both autocrine and paracrine manners independent of its muramidase (enzymatic) activity, acting through cell surface GRP78 (csGRP78) to activate downstream pro-tumoral signaling pathways. LYZ expression in HCC cells is regulated by STAT3 activation. Loss-of-function (knockdown/knockout), overexpression, subcutaneous and orthotopic xenograft tumor models in NOD/SCID mice, mechanistic pathway analysis via csGRP78 Proceedings of the National Academy of Sciences of the United States of America Medium 37428911
2025 LYZ interacts with PEDV non-structural protein NSP8 (identified by IP-MS and confirmed by co-immunoprecipitation and laser confocal microscopy). LYZ promotes PEDV replication by downregulating RIG-I transcript levels through the m6A reader YTHDF2, thereby inhibiting IRF3 phosphorylation, nuclear translocation, and IFN-β production. The N-terminal domain of LYZ is required for this pro-viral function. Immunoprecipitation-mass spectrometry (IP-MS), co-immunoprecipitation, laser confocal microscopy, overexpression/knockdown with viral replication readout, domain deletion analysis, IRF3 phosphorylation and nuclear translocation assays International journal of biological macromolecules Medium 40253018
2024 During typhoid fever, typhoid toxin-induced ATM/ATR-dependent DNA damage responses stimulate secretion of LYZ from host cells. Secreted LYZ alone inhibited secretion of Salmonella virulence effector proteins SipB and SopE, and caused loss of Salmonella morphology characterized by spheroplast formation; this spheroplast formation was enhanced by lactoferrin. Quantitative proteomic analysis of plasma from bacteraemic participants, recombinant typhoid toxin treatment and infection of cultured cells, bacterial morphology assays, virulence effector secretion assays bioRxivpreprint Medium
2020 Estrogen deficiency causes shedding of Paneth cells, leading to decreased LYZ expression in the gut; restoration of Paneth cell populations by arecanut seed polyphenol (ACP) increased LYZ expression, which was associated with regulation of gut microbiota composition and reduction of inflammatory reactions in an osteoporosis rat model. Ovariectomy rat model, histological analysis of Paneth cells, LYZ quantification, gut microbiota profiling, cytokine and macrophage infiltration measurement Journal of agricultural and food chemistry Low 33382620

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Arecanut (Areca catechu L.) Seed Polyphenol-Ameliorated Osteoporosis by Altering Gut Microbiome via LYZ and the Immune System in Estrogen-Deficient Rats. Journal of agricultural and food chemistry 53 33382620
2023 Aberrant LYZ expression in tumor cells serves as the potential biomarker and target for HCC and promotes tumor progression via csGRP78. Proceedings of the National Academy of Sciences of the United States of America 35 37428911
2016 Molecular cloning, inducible expression and antibacterial analysis of a novel i-type lysozyme (lyz-i2) in Pacific white shrimp, Litopenaeus vannamei. Fish & shellfish immunology 25 27074443
2011 Shrimp invertebrate lysozyme i-lyz: gene structure, molecular model and response of c and i lysozymes to lipopolysaccharide (LPS). Fish & shellfish immunology 24 22080112
2022 Determination of deleterious single-nucleotide polymorphisms of human LYZ C gene: an in silico study. Journal, genetic engineering & biotechnology 20 35776277
2016 Variability of lysozyme and lactoferrin bioactive protein concentrations in equine milk in relation to LYZ and LTF gene polymorphisms and expression. Journal of the science of food and agriculture 13 27611486
2024 D-Xylose Ameliorates Non-Alcoholic Fatty Liver Disease by Targeting Macrophage-expressed LYZ Gene. Cell biochemistry and biophysics 2 39379786
2011 ¹H, ¹³C and ¹⁵N NMR assignments of inactive form of P1 endolysin Lyz. Biomolecular NMR assignments 2 21822941
2025 Lysozyme (LYZ) promotes PEDV replication via degrading m6A methylation of RIG-I transcripts through YTHDF2. International journal of biological macromolecules 1 40253018
2026 Cross-scale causal inference integrated with single-cell profiling and molecular simulations reveals a macrophage CSF1R-CD68-LYZ axis linking benzo[a]pyrene to erectile dysfunction. Reproductive toxicology (Elmsford, N.Y.) 0 41548764
2025 SPP1, LYZ, and MCM5: potential diagnostic biomarkers for rheumatoid arthritis and cervical cancer comorbidity. Frontiers in medicine 0 41384115
2025 LYZ Gene as a Novel Therapeutic Target and Diagnostic Biomarker in Glioblastoma: Insights from Multi-Omics Analysis and Functional Validation. Biology 0 41514850

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