Affinage

KNOP1

Lysine-rich nucleolar protein 1 · UniProt Q1ED39

Length
458 aa
Mass
51.6 kDa
Annotated
2026-06-10
9 papers in source corpus 3 papers cited in narrative 3 extracted findings
Cross-family judge faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

KNOP1 (TSG118) is a nucleolar protein that undergoes cell-cycle-dependent redistribution, occupying the dense fibrillar component of the nucleolus in interphase—where it co-localizes with fibrillarin—and relocating to the surface of condensed chromosomes during mitosis (PMID:10430019). Within the nucleolus it serves as a retention factor for ZFP106, binding the C-terminal WD40 repeat domain of ZFP106 and being required for its nucleolar localization (PMID:15833274). Beyond this structural role, KNOP1 has a metabolic function in breast cancer cells, where it directly interacts with NMNAT1 to sustain intracellular NAD+ levels; this NAD+ homeostasis suppresses FoxO1 phosphorylation and promotes FoxO1 nuclear retention, driving GPX4 transcription and thereby suppressing ferroptosis (PMID:40784594). KNOP1 loss reduces NAD+, drives FoxO1 nuclear export, downregulates GPX4, and sensitizes cells to ferroptosis (PMID:40784594).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 1999 Medium

    Established KNOP1 as a nucleolar protein with a dynamic, cell-cycle-coupled localization, raising the possibility of distinct interphase and mitotic functions.

    Evidence Indirect immunofluorescence with affinity-purified antibody, co-localization with fibrillarin in interphase and with condensed chromosomes in mitosis

    PMID:10430019

    Open questions at the time
    • Molecular function within the nucleolus not defined
    • Mechanism driving chromosome surface relocalization at mitosis unknown
    • Single lab, antibody-based localization only
  2. 2005 Medium

    Assigned KNOP1 a concrete molecular role as a nucleolar retention factor for ZFP106, answering what protein partner it acts upon in the nucleolus.

    Evidence Yeast two-hybrid, ZFP106 domain deletion mapping, co-localization, and an in vitro differentiation assay linking KNOP1 loss to loss of nucleolar ZFP106

    PMID:15833274

    Open questions at the time
    • Functional consequence of ZFP106 nucleolar retention not defined
    • Interaction not confirmed by reciprocal endogenous co-IP or structure
    • Biological role of the differentiation-coupled downregulation unresolved
  3. 2025 Medium

    Revealed a metabolic axis linking KNOP1 to NAD+ homeostasis and ferroptosis resistance, defining a disease-relevant function distinct from its nucleolar role.

    Evidence Co-IP, ChIP, NAD+ quantification, ROS detection, proliferation/migration assays, xenografts, and rescue/epistasis with Ferrostatin-1 and NMNAT1 in breast cancer cells

    PMID:40784594

    Open questions at the time
    • Single lab, not independently replicated
    • Whether the NMNAT1 axis connects to the nucleolar/ZFP106 functions is unknown
    • Direct biochemical basis for how KNOP1 sustains NMNAT1-dependent NAD+ output not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How KNOP1's nucleolar structural role relates to its metabolic NAD+/ferroptosis function, and whether either represents a unified molecular activity, remains unresolved.
  • No structural or enzymatic activity defined for KNOP1
  • No mechanism connecting the ZFP106 and NMNAT1 interactions
  • Physiological role outside cancer cells uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 1
Localization
GO:0005730 nucleolus 2 GO:0005694 chromosome 1
Partners

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 TSG118 (KNOP1) localizes to the dense fibrillar component of the nucleolus during interphase (co-localizing with fibrillarin) and re-localizes to the surface of condensed chromosomes during mitosis, indicating cell-cycle-dependent subcellular redistribution. Indirect immunofluorescence microscopy with affinity-purified anti-Tsg118 serum; co-localization with fibrillarin as nucleolar marker European journal of cell biology Medium 10430019
2005 TSG118 (KNOP1) physically interacts with the C-terminal WD40 repeat domain of ZFP106 and co-localizes with ZFP106 in the nucleolus; rapid downregulation of TSG118 during terminal differentiation in vitro coincides with loss of nucleolar ZFP106, indicating TSG118 is required for nucleolar retention of ZFP106. Yeast two-hybrid, co-localization by immunofluorescence, deletion analysis of ZFP106 domains, in vitro differentiation assay The international journal of biochemistry & cell biology Medium 15833274
2025 KNOP1 directly interacts with NMNAT1 to maintain intracellular NAD+ homeostasis, which inhibits FoxO1 phosphorylation and promotes FoxO1 nuclear retention, thereby facilitating GPX4 transcription and suppressing ferroptosis in breast cancer cells; KNOP1 knockdown reduces NAD+ levels, induces FoxO1 nuclear export, downregulates GPX4, and enhances ferroptosis, all reversible by Ferrostatin-1 treatment or NMNAT1 overexpression. Co-immunoprecipitation (co-IP), ChIP assay, NAD+ quantification, CCK-8/EdU/transwell assays, ROS detection, tumor xenograft models, rescue experiments with Ferrostatin-1 and NMNAT1 overexpression, NMNAT1 knockdown epistasis Cellular signalling Medium 40784594

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Genome-wide association study in obsessive-compulsive disorder: results from the OCGAS. Molecular psychiatry 234 24821223
2021 Multi-tissue neocortical transcriptome-wide association study implicates 8 genes across 6 genomic loci in Alzheimer's disease. Genome medicine 57 33947463
2005 Subcellular recruitment by TSG118 and TSPYL implicates a role for zinc finger protein 106 in a novel developmental pathway. The international journal of biochemistry & cell biology 27 15833274
2021 Transcriptome-wide association study identifies multiple genes associated with childhood body mass index. International journal of obesity (2005) 13 33627773
1999 Characterization of a novel nucleolar protein that transiently associates with the condensed chromosomes in mitotic cells. European journal of cell biology 13 10430019
2022 EARS2 significantly coexpresses with PALB2 in breast and pancreatic cancer. Cancer treatment and research communications 8 35779338
2024 Identification of JAZF1, KNOP1, and PLEKHA1 as causally associated genes and drug targets for Alzheimer's disease: a summary data-based Mendelian randomization study. Inflammopharmacology 2 39455528
2025 KNOP1 interacts with NMNAT1 to govern ferroptosis and tumor growth in breast cancer via regulating FoxO1-dependent GPX4 transcription. Cellular signalling 1 40784594
2025 Comprehensive Genome-Wide Analysis of Shared Genetic Factors in Gastrointestinal and Neurodegenerative Diseases. Brain and behavior 1 41277170

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