Affinage

IGSF5

Immunoglobulin superfamily member 5 · UniProt Q9NSI5

Length
407 aa
Mass
44.6 kDa
Annotated
2026-06-10
21 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

IGSF5 (JAM4) is an immunoglobulin-superfamily cell adhesion molecule that organizes epithelial junctions and the glomerular slit diaphragm through its two extracellular Ig-loops and a C-terminal PDZ-binding motif (PMID:12773569, PMID:16155592). It mediates calcium-independent homophilic adhesion and recruits the junctional scaffolds MAGI-1, ZO-1, and occludin to sites of cell contact, with MAGI-1 binding through the JAM4 carboxyl terminus and reinforcing adhesion and paracellular barrier sealing (PMID:12773569). The two Ig-loops are functionally divided: the first Ig-loop directs tight-junction localization and supports cis interactions, while both loops are required for trans homophilic adhesion, and JAM4 in turn dictates the subcellular distribution of MAGI-1 (PMID:12940823). In the kidney, JAM4 forms a tripartite complex with MAGI-1 and nephrin at the glomerular slit diaphragm, a localization that is disrupted in proteinuric injury where JAM4 redistributes apically and loses MAGI-1 colocalization (PMID:16155592, PMID:16118391). Beyond static adhesion, JAM4 signals to promote epithelial remodeling: it activates Rac GTPase to augment HGF-induced branching and scattering (PMID:15330858), and its surface levels are controlled by an LNX1–Numb scaffold that drives JAM4 endocytosis, contributing to TGF-β-induced receptor redistribution (PMID:16832352). Knockout mice lack overt histological defects in tissues where JAM4 is expressed, indicating functional redundancy with other adhesion molecules (PMID:16982697).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2003 High

    Establishing that JAM4 is an adhesion molecule that nucleates a junctional scaffold answered whether it does more than mediate contact — it physically organizes the tight-junction protein network.

    Evidence In vitro binding assays, COS-7 coexpression, L-cell adhesion assays, and CHO monolayer permeability assays

    PMID:12773569

    Open questions at the time
    • Does not define the structural basis of MAGI-1 binding
    • Physiological tissue context of the adhesion not addressed in this study
  2. 2003 Medium

    Domain dissection answered which parts of JAM4 carry out localization versus adhesion, separating tight-junction targeting and cis interactions (first Ig-loop) from trans adhesion (both loops).

    Evidence Deletion/domain mutant analysis with immunofluorescence and adhesion assays in MDCK cells

    PMID:12940823

    Open questions at the time
    • No structural model of the Ig-loops
    • Single-lab domain mapping without orthogonal validation
  3. 2004 Medium

    Linking JAM4 to Rac activation answered whether it has a signaling role beyond adhesion, showing it augments HGF-driven epithelial branching and scattering.

    Evidence JAM4-overexpressing MDCK cells with HGF, GST-CRIB pulldown for active Rac, and dominant-negative Rac in COS-7 morphology assays

    PMID:15330858

    Open questions at the time
    • Mechanism coupling JAM4 to Rac GEFs unidentified
    • Relevance to endogenous JAM4 levels not established
  4. 2005 High

    Placing JAM4 in a nephrin–MAGI-1 complex answered where it acts in vivo, localizing it to the glomerular slit diaphragm.

    Evidence Yeast two-hybrid, in vitro tripartite complex reconstitution, and immunoelectron microscopy

    PMID:16155592

    Open questions at the time
    • Functional consequence of the tripartite complex for filtration not tested
    • Stoichiometry and direct vs bridged interactions unresolved
  5. 2005 Medium

    Examining injured podocytes answered whether JAM4 localization is dynamic in disease, revealing apical redistribution and loss of MAGI-1 colocalization in proteinuria.

    Evidence Immunoelectron microscopy and detergent-extraction fractionation in rat PAN nephropathy

    PMID:16118391

    Open questions at the time
    • Causal role of JAM4 redistribution in foot-process effacement unknown
    • Correlative disease-model observation
  6. 2006 High

    Identifying the LNX1–Numb scaffold answered how JAM4 surface levels are controlled, defining an endocytic regulatory mechanism tied to TGF-β signaling.

    Evidence Yeast two-hybrid, co-IP from kidney lysates, in vitro tripartite binding, RNAi and dominant-negative endocytosis assays

    PMID:16832352

    Open questions at the time
    • Trigger linking TGF-β to LNX1-Numb recruitment unresolved
    • In vivo consequence of JAM4 endocytosis not tested
  7. 2006 Medium

    Knockout mice answered whether JAM4 is individually required in its expressing tissues, showing no overt defect and implying redundancy.

    Evidence Signal sequence trap cloning, immunolocalization, and phenotypic analysis of JAM4-knockout mice (histology, flow cytometry)

    PMID:16982697

    Open questions at the time
    • Redundant adhesion molecules not identified
    • Subtle functional or stress-dependent phenotypes not probed
  8. 2021 Medium

    Quantitative binding measurements answered whether JAM4 prefers homotypic or heterotypic partners, showing heterotypic JAM-family interactions can dominate.

    Evidence Surface plasmon resonance of recombinant MBP-fused extracellular domains

    PMID:33801758

    Open questions at the time
    • Cellular relevance of heterotypic JAM4 interactions untested
    • Specific JAM4 heterotypic partner affinities not detailed in context

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether JAM4 adhesion, Rac signaling, and slit-diaphragm assembly are integrated into a single regulatable pathway, and what physiological process specifically requires JAM4, remains open.
  • No integrated in vivo loss-of-function phenotype defined
  • Redundant partners and disease relevance unestablished

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0098631 cell adhesion mediator activity 2
Localization
GO:0005886 plasma membrane 3
Complex memberships
JAM4-LNX1-Numb endocytic complexJAM4-MAGI-1-nephrin slit diaphragm complex

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 JAM4 (IGSF5) directly binds MAGI-1 (but not ZO-1) through its carboxyl terminus, and when coexpressed in COS-7 cells, JAM4 and MAGI-1 interact and form clusters at cell contacts. JAM4 mediates calcium-independent homophilic adhesion in L cells and recruits MAGI-1, ZO-1, and occludin to JAM4-based cell contacts. MAGI-1 strengthens JAM4-mediated cell adhesion and barrier sealing effects in CHO cell monolayers. Biochemical in vitro binding assays, coexpression in COS-7 cells, cell adhesion assays in L cells, permeability assays in CHO monolayers Molecular and cellular biology High 12773569
2003 JAM4 localization to tight junctions depends on the first Ig-loop, not the MAGI-1-interacting region. Both Ig-loops are necessary for homophilic trans interactions, while cis interactions depend only on the first Ig-loop. JAM4 determines the subcellular localization of MAGI-1 in MDCK cells. Deletion/domain mutant analysis in MDCK cells, immunofluorescence localization, cell adhesion assays Genes to cells : devoted to molecular & cellular mechanisms Medium 12940823
2005 MAGI-1 forms a tripartite complex with nephrin and JAM4 in vitro, and MAGI-1 is localized at the glomerular slit diaphragm where it interacts with both nephrin and JAM4 in vivo. JAM4 is also distributed on apical membranes of podocytes beyond the slit diaphragm. Yeast two-hybrid screening, in vitro biochemical pulldown for tripartite complex, immunoelectron microscopy Laboratory investigation; a journal of technical methods and pathology High 16155592
2004 JAM4 overexpression in MDCK cells enhances HGF-induced branching and scattering. JAM4 activates Rac GTPase (demonstrated by pull-down with CRIB domain of PAK and protrusion formation suppressed by dominant-negative Rac in COS-7 cells), suggesting JAM4 augments HGF-mediated Rac activation. JAM4-overexpressing MDCK cells treated with HGF; COS-7 cell morphology assay; dominant-negative Rac construct; GST-CRIB pulldown assay for active Rac Genes to cells : devoted to molecular & cellular mechanisms Medium 15330858
2006 LNX1 (LNXp70 isoform) directly binds the C-terminal PDZ-binding motif of JAM4 via its second PDZ domain, forming a tripartite complex with JAM4 and Numb. LNX1 facilitates endocytosis of JAM4, and this endocytosis requires Numb (shown by dominant-negative constructs and RNAi). LNX1 is involved in TGF-β-induced redistribution of JAM4 in mammary epithelial cells. Yeast two-hybrid screening, immunoprecipitation from kidney lysates, in vitro biochemical binding assays, dominant-negative constructs, RNA interference, endocytosis assays Oncogene High 16832352
2006 JAM4 protein is localized to the plasma membrane of male germ cells and is expressed in stem cell and progenitor cell populations in male germ cell and hematopoietic lineages. JAM4-deficient mice show no obvious histological abnormalities in testes, liver, or kidney, and hematopoietic stem cell numbers are normal, suggesting functional redundancy with other cell adhesion molecules. Signal sequence trap cloning, immunolocalization, JAM4-knockout mouse generation and phenotypic analysis (histology, flow cytometry) Molecular and cellular biology Medium 16982697
2005 In injured podocytes (PAN nephropathy model), JAM4 expression and subcellular localization are altered — JAM4 is focally increased at the apical membrane of podocytes with effaced foot processes, while its colocalization with MAGI-1 is disrupted. JAM4 remains colocalized with ezrin at the apical membrane in PAN nephropathy. Immunomicroscopy and immunoelectron microscopy in rat proteinuric models; selective detergent extraction to assess subcellular compartmentalization American journal of physiology. Renal physiology Medium 16118391
2021 Surface plasmon resonance of recombinant extracellular domains shows that heterotypic interactions among JAM family members (including JAM4) can be greatly favored over homotypic interactions, and JAM family members have unique tertiary structures despite similar secondary structures. Recombinant protein expression (MBP fusion), surface plasmon resonance (SPR), structural characterization International journal of molecular sciences Medium 33801758

Source papers

Stage 0 corpus · 21 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 JAM4, a junctional cell adhesion molecule interacting with a tight junction protein, MAGI-1. Molecular and cellular biology 142 12773569
2014 JAM-related proteins in mucosal homeostasis and inflammation. Seminars in immunopathology 88 24667924
2005 MAGI-1 is a component of the glomerular slit diaphragm that is tightly associated with nephrin. Laboratory investigation; a journal of technical methods and pathology 55 16155592
2006 Ligand-of-Numb protein X is an endocytic scaffold for junctional adhesion molecule 4. Oncogene 36 16832352
2013 Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. Frontiers in genetics 32 24376456
2010 Up-regulation of the homophilic adhesion molecule sidekick-1 in podocytes contributes to glomerulosclerosis. The Journal of biological chemistry 29 20562105
2006 A CTX family cell adhesion molecule, JAM4, is expressed in stem cell and progenitor cell populations of both male germ cell and hematopoietic cell lineages. Molecular and cellular biology 23 16982697
2024 The MIND diet, brain transcriptomic alterations, and dementia. Alzheimer's & dementia : the journal of the Alzheimer's Association 19 39129336
2004 A high proportion of chromosome 21 promoter polymorphisms influence transcriptional activity. Gene expression 17 15200235
2003 Roles of immunoglobulin-like loops of junctional cell adhesion molecule 4; involvement in the subcellular localization and the cell adhesion. Genes to cells : devoted to molecular & cellular mechanisms 15 12940823
2021 Dietary supplementation of β-conglycinin, with or without sodium butyrate on the growth, immune response and intestinal health of hybrid grouper. Scientific reports 11 34453080
2021 Molecular Characterization of the Extracellular Domain of Human Junctional Adhesion Proteins. International journal of molecular sciences 9 33801758
2013 Germline variants and advanced colorectal adenomas: adenoma prevention with celecoxib trial genome-wide association study. Clinical cancer research : an official journal of the American Association for Cancer Research 9 24084763
2004 JAM4 enhances hepatocyte growth factor-mediated branching and scattering of Madin-Darby canine kidney cells. Genes to cells : devoted to molecular & cellular mechanisms 9 15330858
2021 Novel Methods of Risk Stratifying Patients for Metachronous, Pre-Malignant Colorectal Polyps: A Systematic Review. Critical reviews in oncology/hematology 8 34246774
2005 Altered expression of junctional adhesion molecule 4 in injured podocytes. American journal of physiology. Renal physiology 8 16118391
2023 Bovine Milk Proteome: Milk Fat Globule Membrane Protein Is the Most Sensitive Fraction in Response to High Somatic Cell Count. Journal of agricultural and food chemistry 6 37816197
2022 Burden of rare coding variants reveals genetic heterogeneity between obese and non-obese asthma patients in the African American population. Respiratory research 5 35524249
2020 Homozygous deletion of 21q22.2 in a patient with hypotonia, developmental delay, cortical visual impairment, and retinopathy. American journal of medical genetics. Part A 4 33170561
2024 [Mechanobiological Mechanisms Involved in the Regualation of the Blood-Brain Barrier by Fluid Shear Force]. Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition 1 38322523
2023 Genome-wide identification, evolution and expression analysis of tight junction gene family and the immune roles of claudin5 gene in turbot (Scophthalmus maximus L.). Gene 1 37301449

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