| 1994 |
ID4 protein contains an HLH dimerization domain but lacks the DNA-binding basic region, functioning as a dominant-negative inhibitor of bHLH transcription factors; ID4 inhibits DNA-binding of E47 homodimers and E47/MyoD heterodimers in vitro. |
In vitro DNA-binding assay (gel shift/EMSA) with recombinant proteins |
Nucleic acids research |
High |
8139914
|
| 1995 |
Enforced expression of ID4 (Id-4H) inhibits trans-activation of the muscle creatine kinase E-box enhancer by MyoD in transfection experiments, confirming dominant-negative function. |
Transient transfection reporter assay (E-box/MCK enhancer-luciferase) in mammalian cells |
Genomics |
Medium |
7665172
|
| 1998 |
The human ID4 promoter is regulated by two functional elements: (1) an E-box bound by the bHLH-zip protein USF1 that stimulates transcription (enforced USF1 increases E-box-mediated promoter activity), and ID4 itself blocks this stimulation via heterodimerization with bHLH factors; (2) a downstream GA motif recognized by Sp1 and Sp3 that represses ID4 transcription ~20-fold. |
Transient transfection reporter assay, gel mobility shift assay (EMSA), transfection into Drosophila SL2 cells |
The Journal of biological chemistry |
High |
9516472
|
| 1999 |
The cAMP-dependent signaling pathway (activated by dibutyryl-cAMP, forskolin, or pentoxifylline) selectively and dramatically decreases Id4 gene expression in primary astrocytes; overexpression of Id4 in an astrocyte-derived cell line induces apoptosis (cells round up and die). |
Pharmacological treatment of primary astrocyte cultures, Northern blot, overexpression by transfection with morphological/apoptosis readout |
Experimental cell research |
Medium |
10066362
|
| 2000 |
Enforced expression of Id4 in oligodendrocyte precursor cells (OPCs) stimulates proliferation and blocks differentiation induced by mitogen withdrawal or thyroid hormone; Id4 mRNA and protein decrease together under pro-differentiation conditions, indicating transcriptional control as part of a differentiation-timing mechanism. |
Retroviral overexpression in OPC cultures, differentiation induction by mitogen withdrawal and thyroid hormone treatment, Northern and Western blot for Id4 |
The EMBO journal |
High |
10790366
|
| 2001 |
Id4 expression in Sertoli cells is induced by FSH or cAMP (mimicking FSH via PKA pathway), whereas Id1 is downregulated by FSH; antisense to Id4 had no effect on FSH-mediated transferrin promoter activation in Sertoli cells, unlike Id1 and Id2. |
Immunoprecipitation with isoform-specific antibodies, RT-PCR, Northern blot, antisense oligonucleotide transfection with transferrin promoter reporter assay |
Endocrinology |
Medium |
11316735
|
| 2001 |
Ribozyme-mediated knockdown of ID4 upregulates BRCA1 expression in human ovarian cancer cells (identified by inverse genomics), and increased ID4 expression correlates with anchorage-independent growth; ID4 acts as a negative regulator of BRCA1 promoter activity. |
Randomized ribozyme gene library screen with EGFP reporter under BRCA1 promoter, target gene identification and modulation experiments |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
11136250
|
| 2003 |
ID4 promoter hypermethylation silences ID4 expression in gastric cancer; treatment with DNA methyltransferase inhibitor 5-aza-2'-deoxycytidine (with or without trichostatin A) restores ID4 expression and is accompanied by promoter demethylation. ID4 promoter methylation significantly associates with hMLH1 methylation and microsatellite instability. |
Bisulfite genomic sequencing, methylation-specific PCR, RT-PCR, pharmacological demethylation |
Oncogene |
Medium |
14534543
|
| 2003 |
Id4 overexpression in HC11 mammary epithelial cells increases cell proliferation, inhibits lactogenic hormone-mediated differentiation (reduces beta-casein promoter activity and expression), and induces anchorage-independent growth in soft agar. |
Transient and stable transfection of Id4, proliferation assay, beta-casein promoter reporter assay, soft agar colony assay |
The American journal of pathology |
Medium |
14633621
|
| 2003 |
Xenopus Id4 can inhibit the neurogenic activity of neurogenin and neuroD and the myogenic activity of MyoD in animal cap and in vivo overexpression assays, whereas Id2 inhibits only MyoD and neuroD, and Id3 blocks only neuroD—demonstrating differential substrate specificity among Id proteins. |
Animal cap explant assay, in vivo overexpression in Xenopus embryos, reporter assay |
Developmental biology |
Medium |
14651922
|
| 2004 |
Id4 is required for normal G1-S transition in early cortical progenitors; Id4-null mice show reduced proliferation of ventricular zone stem cells and premature neuronal differentiation, demonstrating that Id4 regulates neural progenitor proliferation and differentiation in vivo. |
Id4-knockout mouse analysis, BrdU incorporation, immunohistochemistry, in vitro neurosphere cultures |
Development (Cambridge, England) |
High |
15469968
|
| 2005 |
Id4 deficiency in mice leads to precocious oligodendrocyte differentiation both in vitro and in vivo; overexpression of Id4 in OPC progenitors prevents differentiation and decreases myelin gene expression (MBP, CGT but not PLP promoters), and Id4 differentially regulates myelin protein expression and subcellular distribution. |
Id4-knockout mouse analysis, overexpression via retroviral transduction, luciferase reporter assay for CGT/MBP/PLP promoters, immunohistochemistry |
Glia |
High |
16862533
|
| 2005 |
Id4 deficiency causes premature neuronal differentiation resulting in a thicker neocortex with more early-born neurons; adult Id4-/- brains are smaller with depleted late-born cortical neurons and astrocytes, and neurosphere proliferation is impaired; BMP2-mediated astrocyte differentiation is accelerated in Id4-/- NPCs. |
Id4-knockout mouse analysis, immunohistochemistry, neurosphere culture, BMP2 treatment assay |
Developmental biology |
High |
15882580
|
| 2006 |
All four ID genes (ID1-4) are neuronal targets repressed by MeCP2; chromatin immunoprecipitation confirmed MeCP2 binding near/within ID1, ID2, ID3 promoters; ID4 mRNA and protein are increased in Mecp2-deficient mouse brain. |
Chromatin immunoprecipitation (ChIP), quantitative RT-PCR, immunofluorescence, laser scanning cytometry in Mecp2-deficient mouse and human RTT brain |
Human molecular genetics |
Medium |
16682435
|
| 2009 |
The protein complex mutant p53-E2F1 assembles on specific regions of the ID4 promoter and positively controls ID4 transcription; ID4 protein then binds to and stabilizes mRNAs encoding pro-angiogenic factors IL8 and GRO-alpha, increasing angiogenic potential in mutant p53-expressing cancer cells. |
Chromatin immunoprecipitation (ChIP) of mutant p53-E2F1 on ID4 promoter; RNA immunoprecipitation (RIP) and mRNA stability assays for IL8/GRO-alpha; siRNA knockdown of mutant p53; angiogenesis assays |
Nature structural & molecular biology |
High |
19783986
|
| 2009 |
Ectopic Id4 expression in DU145 prostate cancer cells increases apoptosis and decreases proliferation (S-phase arrest), associated with increased androgen receptor (AR), p21, p27, and p53 expression; Id4 promoter is hypermethylated in DU145 cells. |
Ectopic expression by transfection, cell cycle analysis (3H-thymidine, FACS), RT-PCR, real-time PCR, Western blot, immunocytochemistry, MSP |
BMC cancer |
Medium |
19500415
|
| 2010 |
ID4 is required for adipocyte differentiation: Id4-/- mice have reduced body fat; MEFs from Id4-/- mice have reduced adipogenic potential with decreased C/EBPα and PPARγ expression; ID4 is induced during 3T3-L1 adipocyte differentiation. |
Id4-knockout mouse analysis, MEF isolation and adipogenic differentiation assay, Western blot for C/EBPα and PPARγ |
The Journal of biological chemistry |
High |
20460371
|
| 2010 |
Id4 promotes osteoblast differentiation via an Id4-Hes1-Hey2 mechanism: Id4 releases Hes1 from Hes1-Hey2 repressor complexes, and free Hes1 increases stability and transcriptional activity of Runx2, a key osteoblast differentiation factor. Loss of Id4 (Id4-/- mice) drastically reduces osteoblast differentiation and drives MSC differentiation toward adipocytes instead. |
Id4-knockout mouse analysis, ST2 cell line Id4 knockdown, genome-wide expression analysis, co-immunoprecipitation for Hes1-Hey2 interaction, Runx2 activity assays |
PLoS genetics |
High |
20628571
|
| 2011 |
ID4 enhances SOX2 protein expression by suppressing miR-9* (which targets SOX2 3'-UTR), leading to SOX2-mediated induction of ABC transporters ABCC3 and ABCC6 and chemoresistance in glioma stem-like cells. |
shRNA knockdown, microRNA overexpression, luciferase 3'-UTR reporter assay, RT-PCR, Western blot, drug resistance assay |
Cancer research |
High |
21531766
|
| 2011 |
ID4 regulates mammary gland ductal expansion by suppressing p38MAPK activity; p38MAPK is activated in Id4-null mammary cells and after siRNA-mediated knockdown; this p38MAPK activation is required for the reduced proliferation and increased apoptosis in Id4-ablated mammary glands. |
Id4-knockout mouse mammary analysis, siRNA knockdown in transformed mammary cells, p38MAPK phosphorylation Western blot, p38MAPK inhibitor treatment |
Development (Cambridge, England) |
High |
22069192
|
| 2013 |
Id4 interacts directly with Twist1 (a bHLH transcription factor) to suppress Twist1-mediated MMP2 expression, thereby inhibiting invasiveness of glioblastoma cells; Id4 expression inversely correlates with MMP2 in GBM patient data. |
Co-immunoprecipitation of Id4 with Twist1, MMP2 reporter assay, invasion assay, siRNA knockdown, TCGA bioinformatic correlation |
Oncogene |
Medium |
24413082
|
| 2013 |
ID4 forms a physical complex with mutant p53 and the acetyltransferase CBP/p300, resulting in acetylation of mutant p53 at K373; this acetylation restores mutant p53 DNA binding and transcriptional activity (BAX, PUMA, p21 expression and apoptosis). Loss of ID4 in LNCaP cells abrogates wild-type p53 DNA binding. |
Co-immunoprecipitation of ID4-p53-CBP/p300 complex, p53 acetylation Western blot, EMSA for p53 DNA binding, luciferase reporter for p53 transcriptional activity, apoptosis assay |
Molecular cancer |
High |
24330748
|
| 2014 |
ID4 is a transcriptional target of gain-of-function p53 mutants (R175H, R273H, R280K); the mutant p53-E2F1 protein complex assembles on the ID4 promoter and positively controls ID4 expression. (Note: this finding was established in 2009; the 2014 review paper [PMID:25512197] elaborates on this but the original data is from PMID:19783986.) |
ChIP, reporter assay, siRNA depletion of mutant p53 |
Proceedings of the National Academy of Sciences of the United States of America |
High |
19783986
|
| 2014 |
EZH2-dependent H3K27me3 initiates ID4 promoter silencing in prostate cancer; EZH2 and H3K27me3 are enriched at the ID4 promoter along with DNMT1 in ID4-negative cell lines; EZH2 knockdown in DU145 leads to re-expression of ID4 with concomitant loss of EZH2, H3K27me3, and DNMT1 at the promoter. |
Chromatin immunoprecipitation (ChIP) for EZH2, H3K27me3, DNMT1 on ID4 promoter; siRNA knockdown of EZH2; RT-PCR for ID4 re-expression |
Oncotarget |
High |
25115397
|
| 2014 |
ID4 heterodimerizes with ID1, ID2, and ID3 via its HLH domain, acting as an inhibitor of inhibitors; ID4 promotes E47 (bHLH) DNA binding by sequestering ID1 (demonstrated by EMSA); the N-terminal alanine-stretch unique to ID4's HLH domain is required for optimal ID-ID interaction; ID4 and ID1 co-localize in prostate cancer cells. |
Co-immunoprecipitation, EMSA (electrophoretic mobility shift assay) for E47 DNA binding competition, co-localization by immunofluorescence, domain deletion mutagenesis |
Biochimie |
High |
25778840
|
| 2014 |
Id4 acts as a downstream target of Notch2 signaling and maintains hippocampal neural stem cell (NSC) quiescence; Id4 knockdown rescues Notch2-induced inhibition of NSC proliferation; Id4 deletion activates NSC proliferation in the dentate gyrus without evoking neurogenesis; Id4 overexpression increases NSC maintenance and promotes astrogliogenesis at the expense of neurogenesis. |
Conditional Id4 knockout, lentiviral shRNA knockdown, Notch2 gain-of-function, BrdU proliferation assay, immunofluorescence, neurosphere assay |
Cell reports |
High |
31390563
|
| 2014 |
Id4 chromatin immunoprecipitation confirmed Id4 binding to the Esr1 and Foxa1 promoter regions in mammary cells; Id4 deficiency leads to striking increases in ERα (Esr1), PR, and FoxA1 expression in both basal and luminal mammary subsets, indicating that Id4 is a negative transcriptional regulator of the ERα signaling axis. |
Conditional MMTV-Cre/K14-Cre Id4 knockout mouse model, ChIP for Id4 on Esr1/Foxa1 promoters, RT-PCR/Western blot for target gene expression |
Development (Cambridge, England) |
High |
25038044
|
| 2014 |
Loss of ID4 in LNCaP prostate cancer cells (L-ID4) promotes castration-resistant prostate cancer (CRPC) through constitutive AR activation and de novo steroidogenesis; RNA-seq revealed a gene expression signature mimicking constitutively active AR in L-ID4 cells; PSA expression persisted in castrated conditions in L-ID4 but not control cells. |
Stable shRNA silencing of ID4 in LNCaP, RNA-seq, xenograft in castrated vs. non-castrated mice, PSA expression assay |
Molecular endocrinology |
High |
24921661
|
| 2015 |
ID4 controls mammary stem cell self-renewal by suppressing key factors required for luminal differentiation; in an ID4-GFP knock-in reporter mouse, ID4 marks a stem cell-enriched basal mammary cell subset; single-cell transcriptomics revealed ID4-high cells have a distinct stem cell transcriptional signature. |
ID4-GFP knock-in reporter mouse, single-cell transcriptomics, FACS, mammary reconstitution assay |
Nature communications |
High |
25813983
|
| 2016 |
ID4 directly interacts with FKBP52 (FK506-binding protein 52) in vitro (but not directly with AR); loss of ID4 increases FKBP52-dependent AR transcriptional activity and promotes CRPC; pharmacological inhibition of FKBP52-AR signaling with MJC13 attenuates tumor growth in L-ID4 xenografts. |
Proteomic analysis (proteomics of L-ID4 vs. L+ns), co-immunoprecipitation/protein interaction studies for ID4-FKBP52, in vitro binding assay, AR reporter assay, MJC13 pharmacological inhibition in xenograft |
Molecular oncology |
High |
28252832
|
| 2017 |
Mutant p53 and ID4 delocalize lncRNA MALAT1 from nuclear speckles and favor its association with chromatin by recruiting MALAT1 via splicing factor SRSF1; this enables aberrant recruitment of MALAT1 on VEGFA pre-mRNA and modulation of VEGFA isoform expression in breast cancer cells. |
RNA immunoprecipitation (RIP), co-immunoprecipitation, RNA FISH for MALAT1 localization, VEGFA isoform analysis by RT-PCR, shRNA knockdown |
EMBO reports |
High |
28652379
|
| 2017 |
ID4 level dictates spermatogonial stem cell (SSC) vs. progenitor state: the ID4-EGFPBright population functions as SSCs, whereas ID4-EGFPDim cells are transitioning to progenitors; conditional overexpression of Id4 blocks transition from SSC to progenitor state. |
Id4-eGFP reporter mouse, conditional Id4 overexpression mouse model, RNA-seq, FACS, transplantation assay |
Development (Cambridge, England) |
High |
28087628
|
| 2017 |
ID4 regulates wild-type and mutant p53 transcriptional activity by promoting acetylation at K373 (and to a lesser extent K320) via CBP/p300 interaction; acetylation-mimic (K373Q) and non-acetylation mimic (K373R) p53 mutants confirmed K373 as the critical residue mediating ID4-dependent p53 activation and downstream cell cycle arrest/apoptosis. |
Ectopic expression in p53-null prostate cancer cells, acetylation-mimic/non-mimic p53 mutants, p53 DNA-binding assay, target gene expression (RT-PCR, Western blot), apoptosis/cell cycle assay |
Oncotarget |
High |
27911860
|
| 2019 |
Id4 promotes elimination of the pro-activation bHLH factor Ascl1 protein in hippocampal neural stem cells (NSCs) by sequestering Ascl1's heterodimerization partner E47, thereby promoting Ascl1 protein degradation and maintaining NSC quiescence; Id4 deletion causes abnormal Ascl1 protein accumulation and premature stem cell activation. |
Id4 conditional knockout in adult hippocampus, Id4 overexpression in NSC cultures, Ascl1 protein level analysis by Western blot, E47-Ascl1-Id4 interaction studies by Co-IP, BrdU proliferation assay |
eLife |
High |
31552825
|
| 2020 |
ID4 interacts with mediator of DNA damage checkpoint protein 1 (MDC1) and, through MDC1, also with DNA repair proteins γH2AX and BRCA1 at fragile chromatin sites; ID4 binds to chromatin following DNA damage but does not affect transcription at these sites, suggesting a role in DNA damage response rather than transcription per se. |
RIME (Rapid Immunoprecipitation Mass spectrometry of Endogenous proteins), ChIP-seq, RNA-seq, immunoprecipitation |
Breast cancer research : BCR |
High |
32527287
|
| 2021 |
ID4 interacts with the bHLH protein HEB (detected by mass spectrometry); ID4 antagonizes HEB transcriptional activity, preventing HEB from binding E-box motifs in regulatory elements of myoepithelial developmental genes (extracellular matrix, contractile cytoskeleton); loss of ID4 in mammary organoids/in vivo allows HEB-dependent myoepithelial differentiation. |
Mass spectrometry (proteomics) for ID4 interactome, ChIP-seq for HEB genomic binding, mammary organoid culture, conditional Id4 knockout mouse, RNA-seq |
iScience |
High |
33554073
|
| 2021 |
CRISPR/dCas9-DNMT3a-targeted methylation of the Id2 and Id4 promoters drives oligodendrocyte precursor cell (OPC) differentiation, confirming that DNA methylation-mediated suppression of ID4 (and ID2) is a direct epigenetic mechanism controlling OPC differentiation. |
Epigenetic editing with CRISPR/dCas9-DNMT3a for targeted methylation of Id4 promoter, OPC differentiation assay |
Cellular and molecular life sciences : CMLS |
High |
34482420
|
| 2024 |
ID4 expression in breast cancer cells promotes VEGFA secretion, which stimulates VEGFR2-integrin β3 interaction in a paracrine fashion; this interaction activates the focal adhesion pathway, promotes migration/invasion/stress fiber formation, and drives nuclear translocation and activation of YAP and TAZ. |
Overexpression and knockdown of ID4, conditioned media paracrine experiments, co-immunoprecipitation of VEGFR2-integrin β3, VEGFA ELISA, YAP/TAZ nuclear localization assay, invasion/migration assay |
Cell death & disease |
Medium |
38321003
|