| 2007 |
Crystal structure of archaeal Hel308 (Sulfolobus solfataricus) reveals a five-domain architecture with a central pore lined with essential DNA-binding residues; domain V acts as an autoinhibitory 'molecular brake' that clamps single-stranded DNA extruded through the central pore, limiting helicase processivity. Hel308 can displace streptavidin from biotinylated DNA, and this protein-displacement activity is only partially inhibited by RPA or Alba1 pre-bound to DNA, while RadA pre-binding has no effect. |
X-ray crystallography (high-resolution crystal structure), in vitro helicase/protein-displacement assays |
The Journal of biological chemistry |
High |
18056710
|
| 2007 |
Mutagenesis of three arginine residues in domain V of archaeal Hel308 demonstrates that domain V couples DNA binding to ATP hydrolysis and positions single-stranded DNA relative to the helicase ratchet domain IV for efficient fork unwinding. |
Site-directed mutagenesis, in vitro ATPase assay, DNA-binding and unwinding assays |
Journal of molecular biology |
High |
17991488
|
| 2005 |
Archaeal Hel308 targets stalled replication forks in vivo (introduction into E. coli dnaE strains causes synthetic lethality, phenocopying RecQ) and in vitro specifically displaces lagging strands from fork structures; it also targets the invading strand of D-loops. |
In vivo genetic complementation (E. coli dnaE conditional lethality), in vitro helicase assays on replication fork and D-loop substrates |
Nucleic acids research |
High |
15994460
|
| 2011 |
Human HEL308 (HELQ) localizes to damaged replication forks after camptothecin treatment, co-localizing with RAD51 and FANCD2. Purified HEL308 requires a 3′ single-stranded overhang to load onto DNA, preferentially unwinds the parental strands of a model stalled fork with a nascent lagging strand, and its unwinding activity is specifically stimulated by human RPA. |
GFP-tag live-cell imaging and co-localization, in vitro helicase assays with purified proteins, RPA stimulation assay |
The Journal of biological chemistry |
High |
21398521
|
| 2010 |
Archaeal Hel308 physically interacts with RPA (but not SSB); interaction requires a conserved amino acid motif at the Hel308 C-terminus. RPA modestly stimulates Hel308 helicase activity (1.5–2 fold), supporting a model in which RPA loads Hel308 onto ssDNA at blocked replication forks rather than directly stimulating its unwinding mechanism. |
Co-immunoprecipitation / pulldown assays, deletion/mutation mapping, in vitro helicase stimulation assays |
DNA repair |
Medium |
21195035
|
| 2013 |
HELQ directly interacts with the RAD51 paralogue complex BCDX2 and functions in parallel to the Fanconi anaemia pathway to promote homologous recombination at damaged replication forks. Helicase-deficient Helq mice show subfertility, germ cell attrition, ICL sensitivity and tumour predisposition. |
Co-immunoprecipitation (direct interaction with BCDX2), mouse knockout phenotyping, epistasis with FA pathway |
Nature |
High |
24005329
|
| 2013 |
Human HELQ is associated with RAD51 paralogs RAD51B/C/D and XRCC2, and with the DNA damage-responsive kinase ATR, as revealed by proteomic analysis. HELQ knockout in human cells enhances sensitivity to mitomycin C and chromosome radial formation, and reduces CHK1 phosphorylation after MMC treatment, indicating HELQ participates in ATR-CHK1 signaling in response to ICL. |
Proteomic analysis (co-IP/MS), HELQ knockout in human cells, MMC sensitivity assay, immunoblot for CHK1 phosphorylation |
Nature communications |
High |
24005565
|
| 2013 |
Helq acts in parallel (non-epistatic) to Fancc in suppressing spontaneous chromosome instability (micronuclei, 53BP1 nuclear bodies) and ICL sensitivity in mice; Helq-deficient cells have intact FANCD2 mono-ubiquitination and focus formation, placing HELQ outside the canonical FA core complex pathway. |
Mouse double mutant (Helqgt/gt; Fancc−/−) epistasis analysis, FANCD2 ubiquitination assay, cytogenetic analysis |
Nucleic acids research |
High |
24005041
|
| 2017 |
The winged helix domain (WHD) of Hel308 promotes DNA binding and unwinding: mutations in a solvent-exposed α-helix of the WHD reduce DNA binding and unwinding. Isolated WHD binds duplex DNA but not ssDNA, and disrupting the interface between the WHD and the RecA-like domain abolishes ATPase and helicase activities. The isolated WHD of human HelQ also binds duplex DNA. |
Site-directed mutagenesis, in vitro DNA-binding assays, ATPase assay, helicase assay with isolated domain constructs |
DNA repair |
High |
28738244
|
| 2019 |
Single-molecule nanopore tweezers (SPRNT) reveal that DNA bases at two specific sites within Hel308 control the kinetics of an ATP-independent step in the ATP hydrolysis cycle, demonstrating sequence-specific translocation kinetics during ssDNA translocation. |
Single-molecule SPRNT (picometer-resolution nanopore tweezers) |
Nucleic acids research |
Medium |
30649515
|
| 2021 |
HELQ possesses both helicase and DNA strand annealing activities that are differentially regulated: RAD51 forms a complex with HELQ and strongly stimulates its translocation/unwinding activity, whereas RPA inhibits DNA unwinding but strongly stimulates DNA strand annealing. HELQ can capture RPA-bound ssDNA strands and displace RPA to facilitate annealing of complementary sequences. HELQ deficiency impairs single-strand annealing (SSA) and microhomology-mediated end-joining (MMEJ) pathways and biases towards long-tract gene conversion during homologous recombination. |
Biochemical reconstitution, single-molecule imaging, HELQ-deficient cell lines with specific pathway assays (SSA, MMEJ, gene conversion tract analysis) |
Nature |
High |
34937945
|
| 2021 |
The N-terminal non-catalytic region of human HelQ contains a PWI-like domain that mediates interaction with RPA to orchestrate loading of HelQ helicase domains onto ssDNA. Once loaded, HelQ translocates along ssDNA as a dimer, activated by ATP-Mg2+ binding at the catalytic site. Specific HelQ-ssDNA interactions critical for the translocation mechanism were identified. |
Domain characterization with deletion constructs, RPA interaction assays (pulldown), in vitro helicase/translocation assays, mutagenesis of ssDNA contact residues |
NAR cancer |
High |
34316696
|
| 2022 |
In Drosophila, HELQ, BLM, and FANCM helicases play distinct roles during synthesis-dependent strand annealing (SDSA): double mutants (blm helq and helq fancm) show more severe SDSA defects than single mutants, and HELQ and FANCM act early to promote formation of recombination intermediates that are then processed by BLM to prevent deletion-prone repair. |
Drosophila genetic double-strand gap repair assay, double mutant epistasis analysis |
Genes |
Medium |
35328029
|
| 2023 |
Human HelQ halts DNA synthesis by DNA polymerase delta (Pol δ) and Pol δ-PCNA-RPA holoenzyme; this inhibition is independent of HelQ DNA binding and maps to a 70-amino-acid intrinsically disordered region of HelQ. POLD3 subunit of Pol δ physically interacts with HelQ via this intrinsically disordered region and strongly stimulates HelQ DNA strand annealing activity. HelQ cannot inhibit the isolated POLD1 catalytic subunit alone. |
In vitro DNA synthesis inhibition assays, novel HelQ mutant proteins, pulldown/Co-IP (POLD3-HelQ interaction), DNA strand annealing assays |
Nucleic acids research |
High |
36718939
|
| 2023 |
HELQ helicase activity is required for EXO1-mediated DNA end resection at double-strand breaks (DSBs), while the ssDNA-binding capacity of HELQ is required for its recruitment to stalled replication forks, where it facilitates fork protection and prevents chromosome aberrations. HELQ synergizes with CtIP (but not BRCA1 or BRCA2) to protect stalled forks. |
HELQ knockout/mutant cells, resection assays (RPA/ssDNA accumulation), replication fork protection assays (DNA fiber), epistasis with CtIP/BRCA1/BRCA2, chromosome aberration analysis |
Nucleic acids research |
Medium |
37897354
|
| 2023 |
A conserved motif IVa (F/YHHAGL) in the RecA2 domain of archaeal Hel308/HELQ acts as a catalytic switch modulating both DNA unwinding and strand annealing: a single amino acid substitution in motif IVa produces hyper-active helicase and annealase activities in vitro and causes a 160,000-fold increase in gene conversion (non-crossover) recombination in archaeal cells, while crossover recombination is unaffected. |
Site-directed mutagenesis, in vitro helicase and strand-annealing assays, all-atom molecular dynamics simulations, in vivo recombination assay in archaea |
Nucleic acids research |
High |
37409572
|
| 2023 |
FANCD2-driven mitotic DNA synthesis (MiDAS) in untransformed human cells requires HELQ, which functions at an early step of this pathway; FANCD2 mono-ubiquitination by FA proteins is a prerequisite step upstream. |
HELQ-deficient cell analysis, MiDAS assay (EdU incorporation on metaphase chromosomes), genetic epistasis with FA pathway components |
Journal of molecular biology |
Medium |
37777152
|
| 2024 |
In C. elegans, HELQ (hel-308) participates in end-joining during ICL repair, contributing to deletion formation at psoralen ICL sites; this is distinct from translesion synthesis-driven SNV formation mediated by POLH/REV1/3. |
C. elegans mutant analysis, whole-genome sequencing of repair products, epistasis with FA pathway (FANCD2, FANCI), TRAIP and FAN1 genetic analysis |
Nature communications |
Medium |
40082407
|
| 2024 |
HELQ specifically suppresses cisplatin sensitivity caused by PRIMPOL-generated ssDNA gaps, with this suppression associated with reduced ssDNA accumulation. RAD52 acts as a mediator downstream; RAD52 promotes ssDNA gap accumulation through a BRCA-mediated mechanism, defining a HELQ–RAD52–BRCA axis in ssDNA gap processing. |
CRISPR genome-wide knockout screens, PRIMPOL-overexpression model, ssDNA accumulation assays, genetic epistasis (HELQ/RAD52/BRCA) |
Nucleic acids research |
Medium |
39530221
|
| 2025 |
HELQ is recruited by RPA at R-loops and resolves R-loops in a manner dependent on its ATPase/helicase catalytic activity. HELQ functionally interacts with the nuclear 5'–3' exoribonuclease XRN2, coordinating R-loop unwinding (by HELQ) with RNA digestion (by XRN2). |
Cell-based R-loop assays (S9.6 immunofluorescence), in vitro R-loop resolution assay with purified proteins, co-IP (HELQ–XRN2 interaction), catalytic-dead HELQ mutant |
Open biology |
Medium |
39965657
|
| 2025 |
HELQ interacts with the H3K9me3 demethylase KDM4B in primordial germ cells (PGCs); HELQ deficiency increases total and chromatin-bound KDM4B levels, reducing H3K9me3 at LINE-1 retrotransposon regions, which triggers LINE-1 expression and DNA damage accumulation in PGCs. Retrotransposition inhibition rescues the developmental defects of HELQ-deficient PGCs. |
Mouse Helq knockout, Co-IP (HELQ–KDM4B interaction), ChIP (H3K9me3 at LINE-1), retrotransposition inhibitor rescue experiment, PGC proliferation assays |
FASEB journal |
Medium |
40542648
|
| 2025 |
HELQ promotes replication fork reversal: HELQ and BCDX2 act epistatically to slow replication fork progression under replication stress (DNA fiber assay), and electron microscopy shows that reversed fork structures are reduced in HELQ-knockout cells. Biochemical reconstitution demonstrates HELQ is stimulated by RPA on fork substrates containing a leading-strand gap. HELQ deletion suppresses nascent strand degradation when BRCA2- or FANCD2-dependent fork protection is lost. |
DNA fiber assay, electron microscopy of replication intermediates, biochemical reconstitution with fork substrates, HELQ-KO epistasis with BRCA2/FANCD2 |
Nucleic acids research |
High |
42055550
|
| 2008 |
In C. elegans, hel-308 functions in ICL repair via a Fanconi anemia-dependent pathway, genetically distinct from polq-1/POLQ which operates through a brc-1 (CeBRCA1)-dependent pathway; epistatic and cytological analyses establish these as parallel mechanisms. |
C. elegans mutant survival assays, checkpoint/apoptosis cytology, genetic epistasis (hel-308 vs. FA pathway vs. polq-1/brc-1) |
DNA repair |
Medium |
18472307
|
| 2016 |
HELQ overexpression or knockdown in osteosarcoma cells alters expression of CHK1 and RAD51 proteins, with HELQ overexpression increasing CHK1 and RAD51 levels and reducing invasion/migration, while knockdown has the opposite effects. The antitumor activities of HELQ are associated with upregulation of CHK1-RAD51 signaling. |
shRNA knockdown and lentiviral overexpression, western blot, Transwell invasion, wound healing, Comet assay |
Oncology reports |
Low |
28000895
|
| 2025 |
HELQ promotes OC platinum resistance by upregulating PARP1 expression; HELQ overexpression increases PARP1 levels, and PARP1 downregulation reverses the HELQ-mediated resistance. HELQ overexpression also sensitizes OC cells to PARP inhibitors. |
HELQ overexpression/knockdown in cell lines, western blot (PARP1, γH2AX, RPA1, 53BP1), PARP1 knockdown rescue, CCK8 viability assay, in vivo xenograft |
Translational oncology |
Low |
40381483
|