| 1991 |
HuD contains three RNA recognition motif (RRM) domains and shows homology to Drosophila ELAV and Sex-lethal proteins, suggesting a role in neuron-specific RNA processing. |
cDNA library screening, sequence analysis |
Cell |
Medium |
1655278
|
| 1996 |
Purified HuD binds mRNAs containing AU-rich elements (AREs) with high affinity; only the first two RRM domains (RRM1 and RRM2) are essential for RNA binding, as shown by deletion analysis. |
Protein purification, RNA binding assays, deletion mutagenesis |
The Journal of biological chemistry |
High |
8626712
|
| 2000 |
All three RRM domains of HuD cooperate to bind AU-rich RNA: RRM1 is critical for affinity (deletion reduces Kd by ~100-fold), while RRM2 and RRM3 deletion increases both association and dissociation rates, suggesting a conformational change during binding that stabilizes the complex. |
Surface plasmon resonance (BIACORE), equilibrium and kinetic binding assays, deletion analysis |
Molecular and cellular biology |
High |
10848602
|
| 2001 |
Crystal structures of HuD RRM1 and RRM2 in complex with ARE RNA (c-fos ARE at 1.8 Å and TNFα ARE at 2.3 Å) reveal a consensus recognition sequence with preference for pyrimidine-rich sequences and a requirement for a central uracil in clustered AUUUA repeats; base recognition occurs via two pockets in conserved RNP motifs and C-terminal ends of RRM domains. |
X-ray crystallography (crystal structures to 1.8 Å and 2.3 Å resolution) |
Nature structural biology |
High |
11175903
|
| 2001 |
HuD overexpression increases the in vivo stability of MYCN mRNA by binding to AU-rich elements in the MYCN 3'-UTR, inhibiting decay mediated by cis-acting destabilizing elements. |
Ectopic overexpression, in vivo mRNA decay assays, reporter constructs |
The Journal of biological chemistry |
Medium |
11711535
|
| 2001 |
HuD overexpression in cortical neurons and retinoic acid-induced embryonic stem cells accelerates neurite outgrowth and increases GAP-43 mRNA levels, establishing HuD as a regulator of GAP-43 expression and neuronal differentiation. |
HSV-1 vector overexpression, immunocytochemistry, in situ hybridization, quantitative RT-PCR |
Experimental neurology |
Medium |
11259113
|
| 2002 |
HuD stabilizes GAP-43 mRNA through a mechanism dependent on poly(A) tail length: HuD delays mRNA degradation by decreasing deadenylation rate, and binds GAP-43 mRNAs with long poly(A) tails (A150) with ~10-fold higher affinity than short tails (A30). |
PC12 cell overexpression, polysome-based in vitro mRNA decay assay, recombinant HuD addition, RNA binding affinity measurements |
The Journal of biological chemistry |
High |
12034726
|
| 2002 |
HuD binds directly to AChE mRNA via AU-rich element in its 3'-UTR and regulates AChE mRNA abundance in neuronal cells; HuD overexpression stabilizes AChE transcripts while antisense HuD reduces them. |
RNA gel shift, Northwestern blot, immunoprecipitation, stable HuD overexpression and antisense PC12 cells, reporter assays |
The Journal of biological chemistry |
Medium |
12468554
|
| 2002 |
HuD binds three AU-rich sequences in the 3'-UTR of neuroserpin mRNA and stabilizes it; ectopic HuD expression in PC12 cells increases both neuroserpin mRNA and protein levels. |
Gel shift, supershift, T1 RNase assays, RNA binding, overexpression in PC12 cells |
Nucleic acids research |
Medium |
12000840
|
| 2003 |
HuD binds U-rich sequences with higher affinity than AU-rich sequences; all three RRM domains participate in binding AU-tracts as short as 13 residues; in vitro selection confirmed poly(U) preference for HuD. |
RNA binding analysis with deletion mutants, in vitro SELEX selection with randomized RNAs, equilibrium binding assays |
The Journal of biological chemistry |
High |
12900401
|
| 1999 |
Cytoplasmic localization of HuD is required for neuronal differentiation; the linker region between RBD2 and RBD3 contains a novel nuclear export signal (NES) required for nucleocytoplasmic shuttling and neurite-inducing activity in PC12 cells. |
Deletion mutant analysis, neurite outgrowth assay in PC12 cells, dominant negative mutants, P19 cell differentiation assay |
Genes to cells |
Medium |
10620013
|
| 2003 |
HuD and GAP-43 mRNA co-localize in cytoplasmic granules in growth cones of DRG neurons; GAP-43 mRNA-HuD granules are found in both central and peripheral domains of growth cones and co-localize with ribosomes; HuD granule distribution in growth cones depends on actin filaments but not microtubules. |
Immunofluorescence, in situ hybridization, confocal microscopy, actin/microtubule disruption experiments |
Experimental neurology |
Medium |
12957493
|
| 2004 |
TAP/NXF1, the primary mRNA export receptor, directly and specifically interacts with HuD (but not HuR); HuD forms a ternary complex with TAP and RNA, suggesting HuD acts as an adaptor for efficient ARE-mRNA nuclear export in neurons. |
In vitro binding with recombinant proteins, co-immunoprecipitation, ternary complex assay |
Biochemical and biophysical research communications |
Medium |
15358174
|
| 2004 |
HuD associates with tau mRNA in neurons; GST-HuD pulldown identified IMP-1 and G3BP-1 as proteins contained within the tau mRNA ribonucleoprotein complex; IMP-1 associates with HuD and G3BP-1 in an RNA-dependent manner. |
GST-HuD fusion protein pulldown, RNA-dependent co-immunoprecipitation, Western blot |
Journal of neurochemistry |
Medium |
15086518
|
| 2004 |
HuD is present in polysomal and cytosolic fractions of hippocampal neurons; it localizes to cytoplasmic granules in dendrites that co-stain with ribosomal marker Y10B; HuD protein levels increase in hippocampal hilus and CA3 after contextual fear conditioning. |
Subcellular fractionation, immunoprecipitation, confocal microscopy, immunohistochemistry after behavioral paradigm |
Neuroscience letters |
Medium |
15519747
|
| 2006 |
CARM1 (coactivator-associated arginine methyltransferase 1) directly methylates HuD in vitro and in vivo; methylation of HuD by CARM1 reduces its ability to stabilize p21(cip1/waf1) mRNA, thereby maintaining PC12 cells in a proliferative state; CARM1 knockdown elongates p21 mRNA half-life and promotes neuritogenesis. |
In vitro methylation assay with purified proteins, siRNA knockdown, mRNA half-life assay, methylation-resistant HuD mutant overexpression |
Molecular and cellular biology |
High |
16508003
|
| 2006 |
HuD overexpression in vivo in transgenic mice selectively increases GAP-43 mRNA stability (not pre-mRNA levels) in hippocampal dentate granule cells, amygdala, and cortex, confirmed by mRNA decay assays showing greater GAP-43 mRNA stability in brain extracts from HuD transgenic mice. |
Transgenic mouse model, quantitative in situ hybridization comparing mRNA and pre-mRNA, mRNA decay assays |
Journal of neurochemistry |
High |
16405504
|
| 2007 |
HuD directly binds AChE mRNA via its AU-rich 3'-UTR element in rat superior cervical ganglion neurons; after axotomy, HuD and its binding to AChE mRNA decrease, leading to reduced AChE mRNA stability; HSV-HuD infection maintains AChE and GAP-43 mRNA levels post-axotomy. |
In vitro mRNA decay assays, RNA-protein complex analysis, HSV-mediated HuD overexpression in vivo, RT-PCR, immunoprecipitation |
The Journal of neuroscience |
High |
17234598
|
| 2008 |
HuD shows activity-dependent dendritic localization following KCl stimulation in hippocampal neurons; HuD associates with mRNAs encoding neuritin, Homer1a, GAP-43, Neuroligins, Verge, and CAMKIIα; activity-dependent HuD expression requires NMDA receptor activation (reduced in NR1 knockout mice); HuD co-localizes with PABP and eIF4E in dendrites. |
Immunofluorescence, RNA immunoprecipitation, KCl stimulation, NMDAR1 knockout mice analysis |
RNA biology |
Medium |
18769135
|
| 2009 |
HuD stimulates cap-dependent translation requiring both a 3' poly(A) tail and 5' m7G cap; HuD directly interacts with eIF4A; both the eIF4A-interaction and poly(A)-binding activities of HuD are critical for its translational enhancer function and for HuD-induced neurite outgrowth in PC12 cells. |
In vitro translation assays with HCV IRES controls, co-immunoprecipitation with eIF4A, HuD binding mutants, neurite outgrowth assay |
Molecular cell |
High |
20064466
|
| 2009 |
Genome-wide identification of HuD targets by mRNP immunoprecipitation from brain and GST-HuD pulldown revealed novel recognition motifs including U-rich (motifs 2 and 3) and C-rich (motif 1) sequences; HuD targets are enriched in neuronal differentiation signaling, RBPs, translation factors, and actin-binding protein mRNAs. |
mRNP immunoprecipitation from brain, GST pulldown, microarray, in vitro binding assays |
Nucleic acids research |
Medium |
19846595
|
| 2010 |
SMN interacts with HuD in neurites of motor neurons; this interaction is mediated by the Tudor domain of SMN; patient-derived Tudor domain mutations causing severe SMA abrogate the interaction; CARM1 methylation of HuD reduces its interaction with p21 mRNA; HuD overexpression rescues SMA-like defects in a hypomorphic Smn knockdown cell line. |
Co-immunoprecipitation, pull-down with purified proteins, site-directed mutagenesis (Tudor mutations), methylation assay, siRNA knockdown, rescue overexpression |
Human molecular genetics |
High |
21088113
|
| 2010 |
miR-375 represses HuD expression through a specific, evolutionarily conserved site in the HuD 3' UTR by reducing both HuD mRNA stability and translation; miR-375 overexpression phenocopies HuD silencing in reducing dendrite density and levels of downstream targets (N-cadherin, PSD-95, RhoA, NCAM1, integrin α1); BDNF-induced neurite outgrowth increase is blocked by miR-375 and rescued by miR-375-refractory HuD. |
Heterologous reporter assays, miRNA overexpression in hippocampus, HuD silencing, rescue with refractory HuD construct |
Molecular and cellular biology |
High |
20584986
|
| 2010 |
Hu proteins (including HuD) promote inclusion of alternative exon 6 in their own pre-mRNA through conserved AU-rich sequences downstream of exon 6; this was confirmed by minigene reporter assays, Hu protein overexpression/knockdown, and in vitro splicing assays. |
Minigene reporter assay, Hu protein overexpression and RNAi knockdown, in vitro splicing assay |
Nucleic acids research |
High |
20159993
|
| 2011 |
SMN interacts with HuD in motor neuron axons in a Tudor domain-dependent manner; SMN knockdown in primary motor neurons reduces HuD protein and poly(A) mRNA levels in the axonal compartment; SMN and HuD co-transport in live motor neurons as shown by time-lapse microscopy and BiFC. |
Bimolecular fluorescence complementation (BiFC), pulldown assays, immunofluorescence, cell transfection, time-lapse microscopy, SMN knockdown |
The Journal of neuroscience |
High |
21389246
|
| 2011 |
SMN and HuD form a complex in spinal motor axons and both interact with cpg15 mRNA; SMN deficiency reduces cpg15 mRNA levels in neurons; cpg15 overexpression partially rescues the SMN-deficiency phenotype in zebrafish. |
Mass spectrometry protein identification, co-immunoprecipitation, mRNA quantification, zebrafish rescue experiments |
Proceedings of the National Academy of Sciences of the United States of America |
High |
21652774
|
| 2012 |
HuD is expressed in pancreatic β cells and binds a 22-nucleotide segment in the 5' UTR of Ins2 (preproinsulin) mRNA; HuD overexpression decreases Ins2 mRNA translation and insulin production without altering mRNA levels; HuD silencing enhances translation and insulin production; glucose treatment causes HuD to rapidly dissociate from Ins2 mRNA. |
RNA immunoprecipitation, HuD overexpression/silencing, insulin measurement, HuD-KO and HuD-OE mice, glucose treatment assays |
Molecular cell |
High |
22387028
|
| 2013 |
HuD interacts with the 3' UTRs of APP mRNA and BACE1 mRNA, increasing their half-lives; HuD also stabilizes lncRNA BACE1AS, which complements BACE1 mRNA and enhances BACE1 expression; HuD-overexpressing mice show higher APP, BACE1, BACE1AS, and Aβ levels in brain. |
RNA immunoprecipitation, mRNA stability assays, HuD-overexpressing mouse model, Western blot |
Cell reports |
High |
24857657
|
| 2013 |
mTORC1 inactivity promotes HuD binding to Kv1.1 mRNA and its translation; mTORC1 inhibition causes degradation of high-affinity HuD target mRNAs, freeing HuD to bind Kv1.1 mRNA; miR-129 represses Kv1.1 mRNA translation when mTORC1 is active. |
RNA immunoprecipitation, mTORC1 inhibition (rapamycin), miR-129 functional assays, HuD binding competition assays |
The Journal of cell biology |
Medium |
23836929
|
| 2013 |
HuD interacts with a conserved AU-rich element specifically in the BDNF long 3'UTR, selectively stabilizing long 3'UTR BDNF mRNA isoforms in vitro and in vivo; HuD transgenic mice show increased BDNF long 3'UTR mRNA in dentate granule cells and elevated BDNF in mossy fiber terminals. |
RNA immunoprecipitation, in vitro stability assays, HuD transgenic mouse model, in situ hybridization, Western blot |
PloS one |
High |
23383270
|
| 2013 |
HuD associates with ATG5 mRNA 3'-UTR in pancreatic β cells; HuD modulates ATG5 mRNA translation (not mRNA levels); HuD promotes autophagosome formation via ATG5-dependent LC3 lipidation; HuD-null mice show lower ATG5 and LC3 in β cells. |
RIP, biotin pulldown, HuD siRNA knockdown and overexpression, GFP-LC3 autophagosome assay, HuD-null mice |
The Journal of biological chemistry |
High |
24275661
|
| 2013 |
HuD and ZBP1 form an RNA-dependent co-immunoprecipitable complex; a HuD-ZBP1 ribonucleoprotein complex binds the AU-rich regulatory element (ARE) in GAP-43 3'UTR and this ARE is necessary and sufficient for axonal localization of GAP-43 mRNA. |
RNA immunoprecipitation, co-immunoprecipitation, reporter mRNA axonal localization assays, ARE deletion mutagenesis |
Journal of neurochemistry |
High |
23586486
|
| 2014 |
Loss of HuD in early development results in defective dendritic overgrowth, impaired neuron specification in lower neocortical layers, hippocampal CA3 dendritogenesis defects, impaired Morris water maze performance, lower anxiety, and increased susceptibility to auditory-induced seizures. |
HuD conditional knockout mice, histological analysis, dendrite morphometry, behavioral testing (Morris water maze, auditory seizure) |
The Journal of neuroscience |
High |
24599466
|
| 2015 |
HuD promotes neuronal differentiation of NSCs by stabilizing SATB1 mRNA; SATB1 in turn transcriptionally activates HuD, forming a positive feedback loop; NeuroD1 is a downstream target of SATB1 in this pathway; SATB1 overexpression rescues neuronal differentiation defects from HuD deficiency. |
HuD knockdown, SATB1 overexpression, mRNA stability assays, rescue experiments in adult SVZ NSCs |
Proceedings of the National Academy of Sciences of the United States of America |
High |
26305964
|
| 2015 |
mTOR activity promotes branch-specific dendritic expression of CaMKIIα by preventing deadenylation of its mRNA; HuD overexpression preserves branch-specific CaMKIIα expression when mTOR is inhibited; deletion of HuD's third RRM (poly(A)-binding domain) eliminates branch-specific expression, indicating HuD captures CaMKIIα mRNA via poly(A) tail binding. |
mTOR inhibition (rapamycin), HuD overexpression and RRM3 deletion mutants, dendritic branch-specific CaMKIIα imaging, poly(A) tail length assays |
The Journal of biological chemistry |
Medium |
25944900
|
| 2015 |
HuD binds directly to sequences in the long Bdnf 3'UTR and co-localizes with Bdnf mRNA in dendrites; PKC activation (at T149 and/or T165 phosphorylation sites) promotes dendritic translation of long Bdnf 3'UTR mRNAs in a HuD-dependent manner. |
In vivo RNA immunoprecipitation, co-localization by fluorescence microscopy, PKC activation, HuD phosphorylation site mutants, dendritic translation reporter assays |
PloS one |
Medium |
25692578
|
| 2015 |
HuD and ZBP1 both bind the β-actin mRNA zipcode element in the 3' UTR, but with different requirements: HuD prefers U-rich sequence, while ZBP1 requires proper spatial organization of a stem-loop structure; their binding sites overlap. |
Cell-free protein-RNA interaction assays, binding preference analysis with isolated cis-elements, mutagenesis |
Nucleic acids research |
Medium |
26152301
|
| 2016 |
HuD binds the 3'UTR of Insig1 mRNA and promotes INSIG1 translation in pancreatic β cells; HuD downregulation reduces INSIG1, facilitating nuclear SREBP1c localization and transcriptional activation of lipogenic genes, increasing triglyceride production; HuD-null mice show lower INSIG1 in islets. |
RIP, biotin pulldown, HuD siRNA and overexpression, SREBP1c nuclear localization assays, triglyceride measurement, HuD-null mice |
Biochimica et biophysica acta |
Medium |
26945853
|
| 2017 |
SMN and HuD interact in zebrafish motoneurons in vivo; zebrafish HuD mutants show decreased motor axon branches, fewer dendrites, movement defects, and reduced Gap43 mRNA; HuD transgenic expression in motoneurons of SMN mutants rescues motoneuron defects, movement defects, and Gap43 mRNA levels. |
Zebrafish SMN-HuD interaction (in vivo), zebrafish HuD loss-of-function mutants, transgenic rescue, mRNA quantification |
The Journal of neuroscience |
High |
29061699
|
| 2018 |
HuD acts as a translation enhancer for mTORC1-responsive mRNAs (ribosomal proteins and translation factors) in a mTORC1-independent fashion; the predominant HuD RNA target is the small non-coding RNA Y3 (70% of HuD interaction signal), which acts as a molecular sponge dynamically limiting HuD recruitment to polysomes and its activity as a translation and neuronal differentiation enhancer. |
CLIP-seq (nucleotide-resolution interactome mapping), polysome profiling, HuD overexpression/knockdown, translation efficiency assays, Y3 sponge functional assays |
Molecular cell |
High |
30029004
|
| 2019 |
Mutant FUS (ALS-linked) shifts binding from introns to 3'UTRs; ELAVL4 mRNA is a target of mutant FUS, leading to increased ELAVL4 protein levels in mutant motor neurons; ELAVL4/mutant FUS interact and co-localize in cytoplasmic speckles with altered biomechanical properties; upon oxidative stress they co-localize in stress granules; in FUS-ALS patient spinal cord, ELAVL4 is a component of FUS-positive cytoplasmic aggregates. |
CLIP-seq (wild-type and mutant FUS), iPSC-derived motor neurons, co-immunoprecipitation, co-localization, stress granule assays, patient tissue analysis |
Cell reports |
High |
31242416
|
| 2019 |
HuD promotes mitochondrial fusion in pancreatic β cells by binding to the 3'UTR of Mfn2 mRNA and positively regulating its expression; HuD knockdown increases mitochondrial fragmentation and reduces mitochondrial membrane potential and ATP production; Mfn2 overexpression rescues HuD-knockdown-induced mitochondrial dysfunction. |
RIP, HuD knockdown (shRNA), Mfn2 overexpression rescue, mitochondrial morphology imaging, membrane potential and ATP assays, HuD KO and db/db mice |
Cell death and differentiation |
High |
31659282
|
| 2020 |
Translation of distinct Elavl4 mRNA isoforms in radial glia progenitors and early neurons is regulated by alternative 5' UTRs; 5'UTR-driven Elavl4 isoform-specific translation depends on upstream regulation by another RBP, Celf1; Celf1 regulation of Elavl4 translation controls glutamatergic neuron development. |
RNA-seq of neocortical polysomes, reporter assays for 5'UTR activity, Celf1 manipulation, neuronal differentiation analysis |
Nature communications |
Medium |
32245946
|
| 2020 |
HuD specifically binds SOD1 mRNA ARE motifs and promotes its stabilization; oxidative stress increases HuD binding to SOD1 mRNA and causes alternative polyadenylation (APA) site shift to a longer variant bearing HuD binding sites; HuD siRNA knockdown prevents SOD1 upregulation during H2O2 treatment; in sALS motor cortex, HuD and SOD1 mRNAs and proteins are co-elevated with increased HuD-SOD1 mRNA binding. |
In vitro binding assays, mRNA decay assays, HuD overexpression and dominant negative, siRNA knockdown, H2O2 oxidative stress, APA analysis, RIP from patient tissues |
Neurobiology of disease |
Medium |
33271327
|
| 2021 |
ALS-causing mutant FUS leads to upregulation of HuD protein through competition with FMRP for binding to the HuD mRNA 3'UTR; increased HuD levels overly stabilize target transcripts NRN1 and GAP43, causing increased axon branching and growth that can be rescued by dampening NRN1 levels. |
iPSC-derived motor neurons and mouse models with FUS mutations, RIP, HuD and FMRP binding competition assays, axon growth measurements, NRN1 rescue experiments |
Communications biology |
High |
34471224
|
| 2022 |
ELAVL4 knockout in human iPSC-derived neurons increases APP isoform levels and intracellular phosphorylated tau; ELAVL4 overexpression reduces extracellular Aβ42/40 ratio; rescue experiments confirm ELAVL4 modulates APP and tau processing; pathway analysis suggests ELAVL4 expression is regulated by insulin receptor-FOXO1 signaling in neurons. |
ELAVL4 KO iPSC-derived neurons, overexpression, rescue experiments, transcriptomic and proteomic analysis, APP isoform quantification, Aβ ELISA, p-tau immunoassay |
Progress in neurobiology |
Medium |
35843356
|