| 2003 |
Human Drosha, a nuclear RNase III enzyme, is the core nuclease that executes the initiation step of miRNA processing: immunopurified Drosha cleaved pri-miRNA to release pre-miRNA in vitro, and RNAi-mediated depletion of Drosha caused accumulation of pri-miRNA and reduction of pre-miRNA and mature miRNA in vivo. |
In vitro cleavage assay with immunopurified Drosha; RNA interference knockdown with Northern blot/RT-PCR readout |
Nature |
High |
14508493
|
| 2004 |
Drosha's two RNase III domains (A and B) form an intramolecular dimer and cleave the 3' and 5' strands of the pri-miRNA stem respectively, mirroring the mechanism of Dicer. Drosha functions in a ~650 kDa complex and requires DGCR8 (which contains two dsRNA-binding domains) as an essential partner for pri-miRNA processing, demonstrated by RNAi depletion of DGCR8 and biochemical reconstitution. |
Mutational analysis of RNase III domains; size-exclusion fractionation; co-immunoprecipitation; RNAi knockdown of DGCR8; biochemical reconstitution of processing complex |
Genes & development |
High |
15574589
|
| 2004 |
Drosha selectively cleaves RNA hairpins bearing a large (≥10 nt) terminal loop, measuring ~two helical RNA turns (~22 nt) from the loop-stem junction into the stem to produce pre-miRNA; approximately one helical turn of stem extension beyond the cleavage site is also essential for efficient processing. |
In vitro cleavage assays with systematic mutant pri-miRNA substrates; measurement of cleavage site positions relative to structural features |
The EMBO journal |
High |
15565168
|
| 2007 |
The DEAD-box RNA helicases p68 (DDX5) and p72 (DDX17) are subunits of the mouse Drosha complex; both are required for processing of a subset of pri-miRNAs and for 5.8S rRNA processing. The purified mouse Drosha large complex generates pre-miRNA and 5.8S rRNA in vitro, and the ATPase activity of p72 is required for its function. |
Genetic knockout of p68 and p72 in mice; microarray miRNA profiling; in vitro processing assay with purified Drosha complex; ATPase-dead mutant rescue experiment |
Nature cell biology |
High |
17435748
|
| 2008 |
TGF-β/BMP-specific SMAD signal transducers are recruited to pri-miR-21 RNA in a complex with the RNA helicase p68 (DDX5), a component of the DROSHA microprocessor complex, promoting rapid post-transcriptional processing of pri-miR-21 into pre-miR-21 without requiring the shared cofactor SMAD4. |
RNA immunoprecipitation showing SMAD association with pri-miR-21 and DROSHA complex; Western blot and Northern blot for miR-21 processing; siRNA knockdown; SMAD4-null cell line experiments |
Nature |
High |
18548003
|
| 2009 |
Drosha and DGCR8 post-transcriptionally regulate each other: the Drosha-DGCR8 complex cleaves hairpin structures embedded in DGCR8 mRNA to destabilize it, while DGCR8 stabilizes the Drosha protein via direct protein-protein interaction, forming a homeostatic feedback loop. Additionally, the Microprocessor can downregulate a subset of cellular mRNAs in a miRNA-independent manner. |
Reporter assays with DGCR8 mRNA hairpins; co-immunoprecipitation; Western blot for Drosha and DGCR8 protein levels under reciprocal knockdown; microarray analysis of mRNA targets |
Cell |
High |
19135890
|
| 2009 |
Drosha/Pasha (DGCR8) complex cleaves hairpin structures in pasha/DGCR8 mRNA 5' UTR in a negative feedback loop; genome-wide tiling array identifies >100 additional non-miRNA Drosha-regulated transcripts containing evolutionarily conserved hairpins, distinct from dicer-1-regulated targets. |
Tiling microarray after Drosha RNAi in Drosophila S2 cells; comparison with Dicer-1 knockdown; bioinformatic evofold analysis for conserved hairpins |
RNA (New York, N.Y.) |
Medium |
19223442
|
| 2010 |
Drosha nuclear localization requires phosphorylation at Serine300 or Serine302 in its N-terminal domain (aa 270–390). Double S300A/S302A mutations completely abolish nuclear localization, while phosphomimetic S300E/S302D mutations restore it; phosphorylation at either site alone is sufficient. |
Truncation constructs to map nuclear localization domain; mass spectrometry identification of phosphorylation sites; site-directed mutagenesis (alanine and phosphomimetic substitutions); subcellular fractionation and immunofluorescence |
Nucleic acids research |
High |
20554852
|
| 2010 |
NMR solution structure of the Drosha C-terminal double-stranded RNA-binding domain (dsRBD) reveals an αβββα fold with a unique extended loop; the domain retains structural features consistent with RNA binding and may contribute to substrate recognition within the Microprocessor complex. |
NMR spectroscopy; structural comparison with other dsRBDs |
Silence |
Medium |
20226070
|
| 2012 |
DROSHA and DICER generate site-specific small RNAs (DDRNAs) at DNA double-strand break sites that are required for activation of the DNA damage response (DDR); depletion of DROSHA impairs DDR foci formation and checkpoint activation, and in vitro-generated DROSHA/DICER cleavage products restore DDR in RNase A-treated cells. |
siRNA knockdown of DROSHA/DICER; DDR foci immunofluorescence; RNase A treatment; RNA deep sequencing at single inducible DSB; chemically synthesized and in vitro generated DDRNAs used for rescue |
Nature |
High |
22722852
|
| 2012 |
BRCA1 directly associates with DROSHA, DDX5 (p68), Smad3, p53, and DHX9 within the DROSHA microprocessor complex, and directly binds primary miRNA transcripts via its DNA-binding domain; BRCA1 enhances processing of let-7a-1, miR-16-1, miR-145, and miR-34a pri-miRNAs. |
Co-immunoprecipitation; in vitro processing assay; Northern blot for pre-miRNA and mature miRNA levels; direct RNA-binding assay |
The Journal of cell biology |
Medium |
22492723
|
| 2012 |
Drosha directly cleaves stem-loop structures within Neurogenin 2 (Ngn2) mRNA in neural progenitors in a miRNA-independent manner, destabilizing the transcript and thereby maintaining neural stem cell character; this is distinct from Dicer function, as Dicer deficiency does not phenocopy Drosha loss in this context. |
Conditional knockout of Drosha and DGCR8 (but not Dicer) in mouse forebrain neural progenitors; RNA immunoprecipitation showing Neurog2 mRNA association with Microprocessor; forced Ngn2 expression phenocopy; evolutionary conservation analysis of hairpins in Neurog2 mRNA |
Nature neuroscience |
High |
22706270
|
| 2013 |
DGCR8 protein sequestration by expanded CGG RNA repeats (FXTAS) co-sequesters its partner DROSHA within nuclear CGG RNA aggregates, reducing miRNA processing and mature miRNA levels in neuronal cells; overexpression of DGCR8 rescues neuronal cell death induced by expanded CGG repeats. |
Immunofluorescence co-localization; DGCR8 overexpression rescue assay; miRNA profiling by qRT-PCR; analysis of FXTAS patient brain tissue |
Cell reports |
Medium |
23478018
|
| 2013 |
Drosha cleavage site selection is determined by measuring distances from both the lower stem–ssRNA (basal) junction (~11 nt) and upper stem–ssRNA (apical loop) junction (~22 nt); non-optimal distances cause Drosha to cleave at multiple sites, generating multiple 5' isomiR variants. |
miRNA-offset RNA assay to define cleavage sites; systematic mutation of lower and upper junctions; in-cell processing assays in human cells |
Proceedings of the National Academy of Sciences of the United States of America |
High |
24297910
|
| 2013 |
Ubiquitination and acetylation oppositely regulate Drosha protein stability: acetylation at the N-terminus by p300, CBP, or GCN5 competes with ubiquitination and inhibits proteasomal degradation of Drosha; H. pylori infection promotes ubiquitination and reduction of Drosha protein without affecting mRNA levels. |
Deacetylase inhibitor treatment (TSA, NIA); proteasome inhibitor treatment (MG132); co-immunoprecipitation for acetylation; Western blot; miRNA sensor assay and qPCR for miR-143 |
PloS one |
Medium |
24009686
|
| 2014 |
DROSHA RNase IIIB domain missense mutations in Wilms tumors act via a dominant-negative mechanism to globally inhibit miRNA biogenesis, distinct from DICER1 mutations which preferentially impair 5'-arm miRNA processing; demonstrated by in vitro processing assays and genomic editing in human cell lines. |
Whole-exome sequencing; in vitro pri-miRNA processing assays with mutant DROSHA; CRISPR/genomic editing to introduce mutations; miRNA expression profiling |
Nature communications |
High |
25190313
|
| 2014 |
The recurrent DROSHA E1147K mutation (affecting a metal-binding residue in the RNase IIIb domain) predominantly downregulates a subset of mature miRNAs without affecting pri-miRNA levels, confirming that this mutation specifically impairs pri-miRNA processing activity. |
Whole-exome sequencing; targeted sequencing; miRNA expression profiling; cell lines expressing mutant DROSHA; confirmation that pri-miRNA levels are unchanged |
Nature communications |
High |
24909261
|
| 2014 |
MeCP2 directly binds DGCR8 and interferes with assembly of the Drosha-DGCR8 complex, suppressing nuclear miRNA processing; gain-of-function MeCP2 inhibits dendritic and spine growth through this DGCR8-interaction-dependent mechanism. |
Co-immunoprecipitation of MeCP2 with DGCR8; in vitro binding assay; miRNA processing assay; neuronal morphology analysis with MeCP2-DGCR8 interaction mutants |
Developmental cell |
Medium |
24636259
|
| 2014 |
Drosha has a cleavage-independent role in promoting splicing of the alternatively spliced exon 5 of eIF4H, which contains a hairpin resembling a Drosha substrate; Drosha binds this exon and enhances its splicing in a structure-dependent but cleavage-independent manner. |
In vitro cleavage assay; splicing reporter assays in cells; Drosha knockdown; catalytic mutant Drosha constructs to separate cleavage from binding function |
PLoS genetics |
Medium |
24786770
|
| 2015 |
mTORC1 activation increases expression of Mdm2, which functions as the ubiquitin E3 ligase for Drosha, promoting its ubiquitination and degradation; conversely, nutrient/energy deprivation (which suppresses mTORC1) stabilizes Drosha. TSC1 mutation (activating mTORC1) reduces miRNA levels via Drosha degradation, while Raptor mutation increases miRNA biogenesis. |
Genetic mutation of Tsc1 and Raptor; Mdm2 identified as necessary and sufficient E3 ligase by knockdown/overexpression; ubiquitination assays; high-throughput miRNA library screen |
Molecular cell |
High |
25639470
|
| 2015 |
Under stress, p38 MAPK directly phosphorylates Drosha at its N-terminus, reducing its interaction with DGCR8, promoting nuclear export of Drosha, and leading to its degradation by calpain, thereby inhibiting Drosha-mediated miRNA biogenesis and sensitizing cells to stress-induced death. |
Kinase assay showing direct p38 phosphorylation of Drosha; co-immunoprecipitation for Drosha-DGCR8 interaction; subcellular fractionation; calpain inhibitor experiments; cell death assays with Drosha overexpression/depletion |
Molecular cell |
High |
25699712
|
| 2015 |
Drosha directly cleaves stem-loop structures within mRNAs encoding two inhibitors of myelopoiesis in early hematopoietic progenitors in a miRNA-independent manner, and this mRNA degradation is necessary for dendritic cell development and myelopoiesis; Drosha deficiency completely halted DC development, a more severe phenotype than Dicer deficiency. |
Conditional knockout of Drosha and Dicer in hematopoietic progenitors; in vitro cleavage assays showing direct Drosha cleavage of target mRNA stem-loops; mRNA expression analysis |
Nature immunology |
High |
26437240
|
| 2016 |
DROSHA is essential for canonical miRNA production: DROSHA knockout in human cells completely abolishes canonical miRNA biogenesis, while only a few DROSHA-independent non-canonical miRNAs persist. In contrast, XPO5 knockout has only modest effects on most miRNAs, indicating complementary nuclear export mechanisms exist. |
CRISPR knockout of DROSHA, XPO5, and DICER in the same human cell line; small RNA sequencing; northern blotting |
Proceedings of the National Academy of Sciences of the United States of America |
High |
26976605
|
| 2016 |
SRSF3 (SRp20) recruits DROSHA to the basal junction of pri-miRNAs by binding the CNNC motif located ~17 nt from the Microprocessor cleavage site; this stimulation of processing efficiency only occurs when CNNC is at this precise position, establishing a distance-dependent mechanism for cofactor-assisted DROSHA recruitment. |
In vitro processing assays with CNNC-mutant pri-miRNA substrates; co-immunoprecipitation of SRSF3 with DROSHA; CNNC position-scanning substrates; SRSF3 knockdown |
RNA (New York, N.Y.) |
High |
29615481
|
| 2016 |
Alternative splicing of Drosha produces isoforms lacking part of the arginine/serine-rich (RS) domain that localize to both nucleus and cytoplasm, in contrast to full-length isoforms which are exclusively nuclear; cytoplasmic isoforms retain pri-miRNA processing activity and cofactor binding. Endogenous mRNA isoform expression correlates with subcellular distribution of Drosha protein. |
RT-PCR identification of splice isoforms; subcellular fractionation; immunofluorescence; processing activity assays with isoform-specific constructs; correlation of endogenous isoform mRNA with protein localization |
Nucleic acids research |
Medium |
27185895
|
| 2016 |
A cytoplasmic Drosha isoform generated by alternative splicing (lacking the nuclear localization signal) can process pri-miRNAs in the cytoplasm in a DGCR8-dependent manner; in vitro-transcribed pri-miRNAs transfected into cells are processed to mature miRNAs in the cytoplasm. |
Identification of cytoplasmic Drosha isoforms; Drosha/DGCR8 knockout cell reporter assay; cytoplasmic cleavage assay with truncated Drosha mutant; transfection of in vitro-generated pri-miRNA into cells |
Nucleic acids research |
Medium |
27471035
|
| 2017 |
fCLIP-seq (formaldehyde crosslinking, immunoprecipitation, and sequencing) maps DROSHA cleavage sites at single-nucleotide resolution genome-wide, revealing widespread end modifications during miRNA maturation, alternative processing yielding multiple miRNA isoforms, and dozens of DROSHA cleavage substrates on non-miRNA loci that may serve as cis-regulatory elements. |
fCLIP-seq (formaldehyde crosslinking + IP + sequencing); single-nucleotide resolution cleavage site mapping; comparison with canonical and non-canonical substrates |
Molecular cell |
High |
28431232
|
| 2017 |
Heme bound to DGCR8 is critical for Microprocessor to process pri-miRNAs with high fidelity; heme induces a conformational change in DGCR8 (rather than altering its oligomerization state) that enables it to correct erroneous Drosha binding events on pri-miRNAs, specifically by recognizing the terminal loop near the 3' single-stranded segment. |
In vitro processing assays with heme-depleted/reconstituted DGCR8; heme-binding mutant DGCR8; FRET/structural assays for DGCR8 conformational change; processing fidelity assays with multiple pri-miRNA substrates |
Nature communications |
High |
29170488
|
| 2017 |
DROSHA targets a conserved hairpin structure spanning an exon-intron junction in its own pre-mRNA to promote skipping of the overlapping exon, regulating its own alternative splicing independently of its cleavage activity; this autoregulation is present in human but not murine cells. |
Minigene splicing reporter assays; catalytic-dead DROSHA mutant; endogenous DROSHA mRNA analysis; DROSHA knockdown; evolutionary conservation analysis |
RNA (New York, N.Y.) |
Medium |
28400409
|
| 2017 |
GSK3β associates with DGCR8 and p72 within the Microprocessor complex in an RNA-dependent manner, phosphorylates Drosha at S300 and/or S302, and thereby promotes Drosha activity, cofactor interactions, and pri-miRNA binding. Inhibition of GSK3β reduces Drosha activity toward pri-miRNAs, accumulating unprocessed pri-miRNAs without altering Drosha protein levels or localization. |
Co-immunoprecipitation of GSK3β with Microprocessor components; kinase assay; phosphomimetic Drosha mutants (S300E/S302D); pri-miRNA accumulation by RT-PCR; pharmacological GSK3β inhibition |
Nucleic acids research |
High |
27907888
|
| 2018 |
Drosha controls formation of DNA:RNA hybrids (R-loops) around DNA double-strand break sites; depletion of Drosha reduces DNA repair by both homologous recombination and non-homologous end joining, and is required within minutes of break induction. Removal of the RNA component of these DNA:RNA hybrid structures impairs repair. |
siRNA/shRNA depletion of Drosha; HR and NHEJ repair assays; DNA:RNA hybrid sequencing (DRIP-seq) around DSB sites; RNase H treatment to remove R-loops; kinetics of Drosha requirement after break induction |
Nature communications |
High |
29416038
|
| 2018 |
In response to RNA virus infection, Drosha undergoes exportin 1 (XPO1/CRM1)-dependent translocation from the nucleus to the cytoplasm independently of de novo protein synthesis or type I IFN signaling; cytoplasmic Drosha correlates with cleavage of viral genomic RNA and modulation of the host transcriptome, contributing to antiviral defense. |
Drosha deletion cells infected with diverse RNA viruses; CRM1 inhibitor (leptomycin B) blocking nuclear export; cycloheximide to exclude new protein synthesis; viral RNA quantification; Drosha localization by immunofluorescence |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
24778219
|
| 2018 |
TDP-43 and FUS proteins interact with Drosha and stabilize it; phosphomimetic TDP-43 (S409/410E) disrupts FUS-Drosha protein-protein interaction, reducing Drosha stability and inducing cytotoxicity in neuronal cells. |
Co-immunoprecipitation of TDP-43/FUS with Drosha; cycloheximide chase for protein stability; gain- and loss-of-function of TDP-43/FUS; site-directed phosphomimetic mutagenesis; cell viability assay |
Biochemical and biophysical research communications |
Low |
26102026
|
| 2020 |
Cryo-EM structure of human Drosha-DGCR8 Microprocessor with pri-miRNA docked in the active site reveals that the basal junction is recognized by a four-way intramolecular junction in Drosha via Belt and Wedge regions that clamp over ssRNA; two dsRBDs act as a molecular ruler measuring stem length between the two dsRNA-ssRNA junctions. A second structure (partially docked state) shows the apical junction dsRBD organization is independent of Drosha core domains. |
Cryo-electron microscopy structure determination; mutagenesis of Belt and Wedge regions; pri-miRNA processing fidelity assays |
Molecular cell |
High |
32220646
|
| 2020 |
Cryo-EM structure of Drosha-DGCR8 without and with pri-miRNA shows that a helix hairpin in the extended PAZ domain and the mobile basic (MB) helix in the RNase IIIa domain coordinate to recognize the ssRNA-dsRNA basal junction; the dsRBD makes extensive contacts with the RNA stem. An autoinhibitory conformation of the PAZ helix hairpin is revealed in the apo structure. |
Cryo-electron microscopy structure determination of RNA-bound and apo Drosha-DGCR8 complex; structure-guided mutagenesis |
Molecular cell |
High |
32220645
|
| 2020 |
DROSHA interacts with β-Catenin to transactivate STC1 in an RNA cleavage-independent manner, contributing to breast cancer stem-like cell properties. DROSHA mRNA is stabilized by AURKA-promoted m6A methylation (via METTL14 stabilization) and IGF2BP2-mediated recognition of m6A-modified DROSHA transcript. |
Co-immunoprecipitation of DROSHA with β-Catenin; DROSHA m6A methylation-deficient mutant; AURKA overexpression/knockdown; ChIP for β-Catenin at STC1 promoter; IGF2BP2 pulldown |
Cell research |
Medium |
32859993
|
| 2013 |
c-Myc directly binds the E-box of the Drosha promoter (confirmed by ChIP) and transactivates Drosha mRNA expression, thereby upregulating Drosha protein levels and promoting miRNA processing both in vitro and in vivo. |
Chromatin immunoprecipitation (ChIP) at Drosha promoter; reporter assay; Western blot for Drosha protein; in vitro and in vivo miRNA processing assays |
Scientific reports |
Medium |
23735886
|
| 2013 |
FMRP (Fragile X mental retardation protein) binds Drosha mRNA and enhances its translation without affecting mRNA stability, thereby promoting pri-miRNA processing; loss of FMRP in Fmr1-knockout mice reduces Drosha protein (not mRNA) and causes accumulation of pri-miRNAs with reduced pre-miRNA and mature miRNA. |
Co-immunoprecipitation and polysome analysis showing FMRP binding to Drosha mRNA; Western blot for Drosha protein vs mRNA in FMRP-KO mice; FMRP overexpression/knockdown; miRNA Northern blot |
Molecular neurobiology |
Medium |
26993298
|
| 2011 |
Drosha knockdown in human mesenchymal stem cells causes G1 phase cell cycle arrest via a miRNA-independent mechanism, with increased p15 and p16 CDK inhibitors, reduced pRB, and significantly reduced 28S and 18S rRNA levels; Dicer knockdown does not phenocopy these effects, implicating Drosha in rRNA processing. |
Lentiviral inducible shRNA knockdown of Drosha and Dicer; cell cycle analysis by flow cytometry; ELISA for pRB; RT-PCR for rRNA transcripts; comparison of Drosha vs Dicer knockdown |
The international journal of biochemistry & cell biology |
Medium |
21794839
|
| 2016 |
DICER and DROSHA are required for secondary recruitment of DDR mediators MDC1 and 53BP1 to DNA damage sites but are dispensable for primary recruitment of the DDR sensor NBS1; DDRNAs are specifically required for this secondary amplification step. |
DICER/DROSHA inactivation; immunofluorescence for NBS1 (primary sensor) vs MDC1 and 53BP1 (secondary mediators); RNase A treatment; rescue with purified DDRNAs |
Journal of cell science |
High |
26906421
|
| 2018 |
Drosha mislocalization to neuronal cytoplasmic inclusions occurs specifically in C9orf72 mutation FTLD-TDP and ALS cases (not cases without C9orf72 mutation), where it co-localizes with dipeptide-repeat protein aggregates (p62+, ubiquilin-2+) but rarely with TDP-43 pathology, suggesting a sequestration mechanism. |
Immunohistochemistry and immunofluorescence co-localization in patient brain tissues (hippocampus, frontal cortex, cerebellum) with multiple antibodies |
Journal of neuropathology and experimental neurology |
Low |
25756586
|