Affinage

DENND1B

DENN domain-containing protein 1B · UniProt Q6P3S1

Length
775 aa
Mass
86.6 kDa
Annotated
2026-04-28
10 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

DENND1B is a DENN-domain guanine nucleotide exchange factor (GEF) for Rab35 that, in complex with AP-2, drives clathrin-mediated internalization of surface receptors including the T-cell receptor (TCR) in TH2 cells, thereby restraining TCR signaling and effector cytokine production in allergic immune responses (PMID:26774822). Beyond immune regulation, DENND1B controls melanocortin 4 receptor (MC4R) signaling and trafficking, linking it to energy homeostasis and obesity (PMID:40048553). Its C-terminal region directs localization to basal microtubule-associated structures at spreading lamellipodia edges, implicating DENND1B in EGF-stimulated cell migration (PMID:33135087).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2016 High

    The central question of how TH2-specific TCR downmodulation is controlled was resolved by demonstrating that DENND1B functions as a Rab35 GEF and, together with AP-2 and Rab35, drives receptor-induced TCR internalization to limit TH2 effector cytokine production.

    Evidence Dennd1b knockout mice, genetic epistasis with AP-2 and Rab35 loss, TCR downmodulation and cytokine assays, replication in human TH2 cells carrying asthma-associated variants

    PMID:26774822

    Open questions at the time
    • Structural basis of DENND1B selectivity for Rab35 over other Rabs is undefined
    • Whether DENND1B regulates internalization of receptors other than TCR in immune cells was untested
    • Downstream effectors of Rab35 in TCR endocytic trafficking are uncharacterized
  2. 2020 Medium

    The subcellular site of DENND1B action outside the immune system was identified when its C-terminal region was shown to direct it to basal microtubule-associated 'gathered line' structures at spreading lamellipodia, linking DENND1B to EGF-stimulated cell migration.

    Evidence Live-cell imaging, deletion mutant analysis, fluorescence microscopy of cytoskeletal markers in adherent cells stimulated with EGF

    PMID:33135087

    Open questions at the time
    • Single-lab observation not yet independently replicated
    • Whether Rab35 GEF activity is required at these basal structures is untested
    • The molecular identity and function of 'gathered line' structures remain poorly defined
  3. 2025 Medium

    DENND1B's functional repertoire was expanded beyond immunity when cross-species studies demonstrated that it regulates MC4R signaling and trafficking, establishing a mechanistic link between DENND1B and energy homeostasis.

    Evidence Canine GWAS with cross-species validation; functional assays measuring MC4R signaling and trafficking

    PMID:40048553

    Open questions at the time
    • Whether Rab35 mediates DENND1B's effects on MC4R trafficking is not established
    • The specific trafficking step (internalization, recycling, degradation) controlled by DENND1B for MC4R is unresolved
    • In vivo metabolic phenotyping of DENND1B loss in the context of MC4R-driven energy homeostasis has not been reported

Open questions

Synthesis pass · forward-looking unresolved questions
  • A unifying model of how DENND1B coordinates Rab35-dependent trafficking across its diverse receptor substrates (TCR, MC4R, and potentially others) and how its C-terminal domain-directed localization integrates with its GEF activity at distinct subcellular sites remains to be constructed.
  • No structural data for DENND1B or its complex with Rab35/AP-2 exist
  • Systematic identification of DENND1B cargo receptors has not been performed
  • The relative contributions of GEF-dependent versus GEF-independent functions of DENND1B are unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2
Localization
GO:0005829 cytosol 1 GO:0005856 cytoskeleton 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 2 R-HSA-162582 Signal Transduction 1 R-HSA-168256 Immune System 1
Partners

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2016 DENND1B acts as a guanine nucleotide exchange factor (GEF) for Rab35, and interacts with AP-2 and Rab35 to regulate TCR downmodulation specifically in TH2 cells. Loss of DENND1B, AP-2, or Rab35 causes delayed receptor-induced TCR internalization, enhanced TCR signaling, and increased effector cytokine production in TH2 cells. Dennd1b knockout mouse generation; genetic epistasis with AP-2 and Rab35 knockouts; TCR downmodulation assay; cytokine production assays; human TH2 cell phenotyping with asthma-associated variants Cell High 26774822
2020 DENND1B localizes to novel 'gathered line' structures at the basal side of adherent cells in a manner dependent on its C-terminal region. These structures associate with microtubules (but not F-actin) and appear at spreading lamellipodia edges during EGF-stimulated cell migration, implicating DENND1B in cell motility regulation. Live-cell imaging, subcellular fractionation/localization, deletion mutant analysis, EGF stimulation assay, fluorescence microscopy of cytoskeletal markers Histochemistry and cell biology Medium 33135087
2025 DENND1B regulates signaling and trafficking of melanocortin 4 receptor (MC4R), a critical controller of energy homeostasis, establishing a role for DENND1B in obesity beyond immune function. Canine GWAS cross-species validation; functional assays demonstrating MC4R signaling and trafficking regulation Science Medium 40048553

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 Variants of DENND1B associated with asthma in children. The New England journal of medicine 252 20032318
2016 Regulation of T Cell Receptor Signaling by DENND1B in TH2 Cells and Allergic Disease. Cell 55 26774822
2014 Reduced expression of TLR3, TLR10 and TREM1 by human macrophages in Chronic cavitary pulmonary aspergillosis, and novel associations of VEGFA, DENND1B and PLAT. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 33 24712925
2021 CircNFIC Balances Inflammation and Apoptosis by Sponging miR-30e-3p and Regulating DENND1B Expression. Genes 17 34828435
2017 Polymorphisms in DENND1B gene are associated with asthma and atopy phenotypes in Brazilian children. Molecular immunology 10 28668455
2025 Canine genome-wide association study identifies DENND1B as an obesity gene in dogs and humans. Science (New York, N.Y.) 9 40048553
2013 DENND1B gene variants associate with elevated exhaled nitric oxide in healthy high-risk neonates. Pediatric pulmonology 9 24347560
2022 circRNA DENND1B inhibits tumorigenicity of clear cell renal cell carcinoma via miR-122-5p/TIMP2 axis. Open medicine (Warsaw, Poland) 3 36578555
2020 A novel DENND1B-localized structure found at the basal side of adherent cells. Histochemistry and cell biology 2 33135087
2019 Variation at DENND1B and Asthma on the Island of Tristan da Cunha. Twin research and human genetics : the official journal of the International Society for Twin Studies 1 31608842