| 2007 |
HIF-1 reciprocally regulates COX4-1 and COX4-2 isoform expression in response to hypoxia: under low O2, HIF-1 activates transcription of COX4-2 and LON (a mitochondrial protease required for COX4-1 degradation), thereby switching subunit composition to optimize respiration efficiency. Manipulating COX4 isoform expression alters COX activity, ATP production, O2 consumption, and ROS generation. |
Transcriptional reporter assays, siRNA knockdown, overexpression, O2 consumption and ATP measurement, ROS assay |
Cell |
High |
17418790
|
| 2007 |
Yeast Cox4 (ortholog of human COX4I1) binds Zn(II) via a single His and three conserved Cys residues; Cys-ligand substitutions abolish cytochrome oxidase assembly, demonstrating that Zn(II) binding is required for structural stability of the complex. NMR solution structure reveals a C-terminal globular domain with two β-sheets, the Zn buried within. |
NMR structure determination, site-directed mutagenesis of Zn-coordinating residues, yeast complementation / growth assays |
The Journal of biological chemistry |
High |
17215247
|
| 2006 |
Translation of yeast COX4 is repressed in the absence of phosphatidylglycerol and cardiolipin (pgs1Δ mutant). A 50-nucleotide fragment with two stem-loops in the 5′-UTR acts as a cis-element inhibiting COX4 translation; a cytoplasmic protein factor specifically binds this element in pgs1Δ cells, linking mitochondrial lipid composition to nuclear-gene translational control. |
mtGFP reporter fusions, 5′-UTR deletion analysis, RNA-binding protein pulldown from cytoplasmic extracts, genetic complementation |
Molecular and cellular biology |
High |
16428432
|
| 2009 |
Polyamines (spermidine) stimulate COX4 translation in yeast by promoting ribosome shunting over stem-loop (hairpin) structures in the COX4 mRNA 5′-UTR, identifying COX4 as the first member of the yeast 'polyamine modulon'. |
Polyamine-requiring spe1Δ mutant rescue, polysome profiling, 5′-UTR reporter assays |
The international journal of biochemistry & cell biology |
Medium |
19695341
|
| 2017 |
A K101N missense mutation in human COX4I1 causes decreased COX activity, impaired ATP production, elevated ROS, and undetectable COX4-1 protein in patient fibroblasts; lentiviral transduction with wild-type COX4I1 restored COX activity and ATP production, establishing COX4I1 as the first nuclear-encoded subunit whose mutation causes human mitochondrial disease via COX deficiency. |
Whole-exome sequencing, Sanger confirmation, enzymatic activity assays, ATP measurement, ROS assay, lentiviral complementation |
European journal of human genetics |
High |
28766551
|
| 2017 |
Chlorpromazine selectively inhibits cytochrome c oxidase (CcO) activity in chemoresistant glioma cells expressing COX4-1 but not in chemosensitive cells expressing COX4-2, and computer-docking shows tighter binding to COX4-1-containing CcO. COX4-1-expressing cells undergo selective cell-cycle arrest with chlorpromazine treatment in orthotopic mouse models. |
CcO enzymatic activity assays, in silico docking, cell cycle analysis, orthotopic mouse brain tumor model |
Oncotarget |
Medium |
28455961
|
| 2021 |
Complete knockout of COX4I1 (COX4 subunit) in HEK293 cells abolishes complex IV (cIV) and causes profound deficiency of complex I (cI), reducing cI subunit levels and assembled cI. Pulse-chase metabolic labeling shows decreased mitochondrial translation of both cIV and cI subunits, and complexome profiling reveals accumulation of cI assembly intermediates, indicating that COX4I1 loss impairs mitochondrial protein synthesis and cI biogenesis. |
CRISPR/Cas9 knockout, BN-PAGE complexome profiling, pulse-chase 35S-metabolic labeling of mtDNA-encoded proteins, Western blotting of OXPHOS subunits |
Cells |
High |
33578848
|
| 2020 |
Dynein light chain 1 (Dynll1) forms a persistent complex with mitochondrial Cox4i1; pathogen insult (Listeria monocytogenes) dissociates this complex, and dissociation is required for release of mitochondrial ROS that restrict intracellular bacterial proliferation. Thus Dynll1 acts as an inhibitor of mitochondrial ROS through its interaction with Cox4i1. |
Mass spectrometry of membrane proteins, co-immunoprecipitation, Listeria infection model in dendritic cells, ROS measurement |
Infection and immunity |
Medium |
32041786
|
| 2022 |
COX4-1 expression promotes assembly of CcO-containing mitochondrial supercomplexes (SCs) in GBM cells and reduces superoxide production; overexpression of COX4-1 in radiosensitive cells is sufficient to shift metabolism from glycolytic to oxidative and confer radioresistance, while silencing in radioresistant cells disassembles SCs and increases superoxide. |
Isogenic GBM cell lines (COX4-1 OE / silencing), BN-PAGE for supercomplex analysis, Seahorse metabolic profiling, ROS measurement, clonogenic radiation survival assay |
Cell stress |
High |
35478774
|
| 2018 |
HIF-1α regulates the COXIV-1/COXIV-2 ratio in neurons following microwave-induced mitochondrial ROS production: HIF-1α inhibition down-regulates COX4I1 expression, impairs mitochondrial membrane potential and ATP production, and increases ROS, indicating HIF-1α maintains COX4I1 levels as a protective response. |
In vivo microwave exposure model, HIF-1α inhibitor treatment, luciferase reporter for HIF-1α transcriptional activity, Western blot, ATP and ROS measurement, MMP assay |
Scientific reports |
Medium |
29991768
|
| 2021 |
miR-338 directly targets COX4I1; inhibition of miR-338 increases COX4I1 protein and CcO activity, improving ATP production and cell survival after ischemia/glucose deprivation in astrocytes and neurons. Concurrent siRNA knockdown of COX4I1 abolishes the protective effect, placing COX4I1 downstream of miR-338 in the ischemic injury pathway. |
miR-338 antagomir/mimic in vivo (MCAO model) and in vitro, CcO activity assay, ATP measurement, siRNA epistasis experiment, infarct size measurement |
Mitochondrion |
High |
33933660
|
| 2024 |
COX4I1 depletion in EVT trophoblast cells inhibits proliferation, increases migration and invasion, impairs mitochondrial respiration and glycolysis, and promotes mitochondrial fusion; MMP1 knockdown rescues the increased migration/invasion caused by COX4I1 silencing, placing MMP1 downstream of COX4I1 in trophoblast invasion control. |
siRNA knockdown, RTCA proliferation/migration/invasion assay, EdU, MitoTracker staining, Seahorse metabolic analysis, siRNA epistasis (MMP1) |
Placenta |
Medium |
38718733
|
| 2022 |
COX4-1 deficiency leads to replicative stress and impaired nuclear DNA damage response: patient fibroblasts and COX4I1-knockdown cells accumulate DNA damage preferentially in proliferating cells, show reduced DNA damage response pathway expression, impaired recovery from genotoxic insult, and decreased DNA repair capacity, leading to premature senescence. |
Patient fibroblasts (COX4I1 mutation), siRNA knockdown, γH2AX immunofluorescence, DNA damage response gene expression, genotoxin recovery assay |
International journal of molecular sciences |
Medium |
35456968
|
| 2024 |
CRISPR screen identified COX4I1 as a vulnerability in AML; COX4I1 depletion induces mitochondrial stress and ferroptosis, disrupts mitochondrial ultrastructure and OXPHOS, and synergizes with venetoclax. CRISPR tiling scans coupled with mitochondrial proteomics identified critical regions within COX4I1 essential for complex IV assembly. |
Cell signaling-focused CRISPR screen, COX4I1 KO/depletion, mitochondrial proteomics, CRISPR gene tiling, in vivo AML xenograft, drug synergy assay (venetoclax + chlorpromazine) |
Advanced science |
High |
39716856
|
| 2018 |
Human cytochrome c oxidase complex IV contains 14 subunits; cryo-EM structure at 3.3 Å of the human supercomplex I1III2IV1 assigned NDUFA4 as a subunit of complex IV occupying the dimeric interface, demonstrating that the intact complex IV is a monomer. COX4I1 (subunit IV-1) is resolved as part of the complete structure. |
Cryo-EM structure determination at 3.3 Å from human supercomplex |
Cell research |
High |
30030519
|
| 2012 |
COX4I1 (as an early-assembling, presequence-containing subunit) is integrated into cytochrome c oxidase assembly intermediates (MITRAC complexes) via TIM21, which links the TIM23 mitochondrial presequence translocase to respiratory-chain assembly; loss of TIM21 impairs integration of COX4I1-containing subunits into assembly intermediates and regulates mitochondrial protein synthesis in response to assembly state. |
Comprehensive co-IP/AP-MS of COX assembly intermediates, TIM21 knockdown, pulse-chase metabolic labeling, BN-PAGE |
Cell |
High |
23260140
|
| 2025 |
Arachidonoyl-phosphatidylethanolamine (AA-PE), accumulated in brown adipose tissue mitochondria during cold stress via LPCAT3, partitions at the COX4I1 interface of cytochrome c oxidase; lipid-based proteomics, MD simulations, and bioenergetic analyses show this interaction enhances electron transport chain efficiency and is required for respiratory-dependent thermogenesis. |
Lipid-based proteomics, molecular dynamics simulations, bioenergetic (ETC) analysis, fat-specific Lpcat3-KO mice, cold acclimation model |
bioRxivpreprint |
Medium |
bio_10.1101_2025.05.15.654206
|
| 2025 |
COX4I1-expressing (transmitochondrial) cybrid cells reconstituted with COX4-1-containing mitochondria restore CcO activity and confer resistance to erastin-induced ferroptosis, instead undergoing apoptosis; COX4-1 cybrids exhibit reduced labile iron, diminished cystine uptake, and low SLC7A11/GPX4 expression, demonstrating that mitochondrial COX4-1 rewires redox metabolism and diverts cell-death signaling from ferroptosis to apoptosis. |
CRISPR POLG-KO ρ0 cells, transmitochondrial cybrid reconstitution, CcO activity assay, cell death mode analysis, iron measurement, cystine uptake, Western blot for SLC7A11/GPX4 |
Antioxidants |
High |
41596099
|
| 2011 |
Cytochrome c oxidase (COX) activity and COX4 protein levels are regulated by reversible phosphorylation downstream of cAMP/PKA and tyrosine kinase signaling, linking cell signaling pathways to COX activity, mitochondrial membrane potential, and ROS/ATP production; identified phosphorylation sites on COX subunits including COX4I1. |
Phosphoproteomic analysis of COX, kinase/signaling inhibitor studies, crystal-structure mapping of phosphorylation sites |
Biochimica et biophysica acta |
Medium |
21771582
|
| 2025 |
A de novo nonsense COX4I1 variant in trans with a deep intronic variant (causing frameshift) primarily reduces COX4I1 protein levels, impairing complex IV assembly and activity. Proteomic analysis of patient fibroblasts also revealed decreased levels of mitoribosomal proteins, suggesting COX4I1 deficiency secondarily affects mitochondrial ribosome homeostasis. |
Short- and long-read NGS, functional studies in patient tissues and transfected cell lines, complex IV activity assay, mitochondrial proteomics |
Mitochondrion |
Medium |
41203052
|