Affinage

COMMD5

COMM domain-containing protein 5 · UniProt Q9GZQ3

Length
224 aa
Mass
24.7 kDa
Annotated
2026-06-09
14 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

COMMD5 (HCaRG) is an intracellular adaptor protein that couples endosomal trafficking to growth-factor receptor regulation and renal epithelial homeostasis (PMID:30021164). Mechanistically, its N-terminal domain binds the endosomal GTPase Rab5 while its C-terminal COMMD domain engages cytoskeletal scaffolding, enabling long-range endosomal transport, vesicle scission into sorting endosomes, and EGFR recycling; loss of COMMD5 reorganizes the actin and microtubule networks (PMID:30021164). Consistent with a role in restraining receptor signaling, COMMD5 drives dephosphorylation of ErbB2 and promoter methylation–dependent silencing of EGFR and ErbB3, inactivating downstream ERK, AKT, and mTOR signaling (PMID:29050225). At the cellular level it imposes G2/M arrest with p53-independent upregulation of p21 and downregulation of p27, and promotes a differentiated epithelial phenotype (PMID:12620924, PMID:24515317). In the kidney, COMMD5 accelerates re-differentiation and repair of proximal tubular epithelium after ischemia/reperfusion injury and protects tubular cells from cisplatin-induced oxidative stress by sustaining autophagy flux and limiting JNK/caspase-3–dependent apoptosis (PMID:21921141, PMID:39298552). An extracellular form of COMMD5 additionally induces ANP and eNOS in endothelial cells to promote endothelium-dependent vasodilation (PMID:36804542).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2000 Medium

    Established COMMD5/HCaRG as a nuclear protein that restrains cell proliferation, framing it as a candidate growth regulator.

    Evidence Nuclear fractionation/immunostaining and overexpression proliferation assays in HEK293 cells

    PMID:10918053

    Open questions at the time
    • No molecular partner or mechanism for proliferation control identified
    • Functional domains assigned by sequence only, not validated
  2. 2002 Medium

    Linked the anti-proliferative effect to a defined cell-cycle checkpoint by showing G2/M arrest with p21 up- and p27 downregulation and an epithelial differentiation program.

    Evidence Stable transfection with flow cytometry, Western blot, and differentiation/junction readouts in renal epithelial cells

    PMID:12620924

    Open questions at the time
    • Did not establish how COMMD5 transactivates p21
    • Mechanism connecting cell-cycle arrest to differentiation unresolved
  3. 2005 Medium

    Connected COMMD5 to growth-factor signaling by showing it drives an autocrine TGF-alpha/EGFR loop that promotes migration.

    Evidence Conditioned-medium transfer with EGFR pathway blockade, microarray, and migration assays in HEK293/MDCK-C7

    PMID:16033922

    Open questions at the time
    • Direct molecular link between COMMD5 and TGF-alpha induction not defined
    • Receptor-level effects only partially blocked
  4. 2011 Medium

    Demonstrated physiological relevance in vivo by showing COMMD5 overexpression accelerates tubular re-differentiation and repair after ischemic injury.

    Evidence Transgenic mouse ischemia/reperfusion model with E-cadherin, vimentin, Ki67 and macrophage readouts

    PMID:21921141

    Open questions at the time
    • Molecular mechanism of accelerated re-differentiation not dissected
    • Single transgenic gain-of-function model
  5. 2014 Low

    Specified that COMMD5-driven p21 induction operates through a p53-independent pathway during repair.

    Evidence p21 promoter assays and transgenic ischemia/reperfusion model

    PMID:24515317

    Open questions at the time
    • Reported in a review/summary with limited methodological detail
    • p53-independent effector linking COMMD5 to p21 unidentified
  6. 2017 Medium

    Revealed COMMD5 as a suppressor of ErbB receptor signaling through ErbB2 dephosphorylation and epigenetic silencing of EGFR/ErbB3.

    Evidence Overexpression in RCC cells and homograft model with phospho-Western, methylation assays, and tumor measurement

    PMID:29050225

    Open questions at the time
    • Phosphatase and methyltransferase machinery recruited by COMMD5 not identified
    • Single lab
  7. 2018 High

    Defined the core molecular mechanism: COMMD5 is a bipartite adaptor linking Rab5-positive endosomes to the cytoskeleton, governing long-range trafficking and EGFR recycling.

    Evidence Reciprocal domain-mapping pulldowns, live-cell trafficking imaging, EGFR recycling and siRNA cytoskeletal imaging

    PMID:30021164

    Open questions at the time
    • Specific cytoskeletal scaffolding partner(s) of the COMMD domain not fully named
    • Link between endosomal adaptor function and nuclear/cell-cycle roles unresolved
  8. 2023 Medium

    Uncovered an extracellular, endothelium-dependent vasodilatory activity of COMMD5 acting through ANP and eNOS.

    Evidence Ex vivo vascular ring assays with denuded controls and HUVEC siRNA/stimulation with ANP/eNOS readouts

    PMID:36804542

    Open questions at the time
    • Receptor or surface mechanism for extracellular COMMD5 unknown
    • Relationship between intracellular adaptor role and secreted activity unclear
  9. 2024 Medium

    Showed COMMD5 protects tubular epithelium from oxidative injury by sustaining autophagy flux and suppressing JNK/caspase-3 apoptosis.

    Evidence PT-specific transgenic mouse cisplatin model plus TEC siRNA with ROS, mitochondrial, autophagy and apoptosis readouts

    PMID:39298552

    Open questions at the time
    • Mechanism by which COMMD5 enhances autophagy flux not defined
    • Direct effector linking COMMD5 to JNK regulation unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the endosomal/cytoskeletal adaptor function mechanistically integrates with the nuclear cell-cycle, epigenetic ErbB-silencing, and extracellular vasodilatory roles remains unresolved.
  • No unifying mechanism connecting trafficking, transcriptional, and secreted activities
  • Cytoskeletal binding partner and putative phosphatase/methyltransferase effectors unidentified
  • No structural model of the bipartite domain architecture

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 1 GO:0060090 molecular adaptor activity 1
Localization
GO:0005634 nucleus 1 GO:0005768 endosome 1 GO:0005856 cytoskeleton 1
Pathway
R-HSA-162582 Signal Transduction 1 R-HSA-1640170 Cell Cycle 1 R-HSA-5653656 Vesicle-mediated transport 1

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 HCaRG (COMMD5) protein localizes to the nucleus, contains a mutated EF-hand calcium-binding motif, four putative leucine zipper motifs, and a nuclear receptor-binding domain. Stable overexpression in HEK293 cells significantly reduced cell proliferation as measured by cell count and [3H]thymidine incorporation. Subcellular localization by nuclear fractionation/immunostaining; functional overexpression with proliferation assays ([3H]thymidine incorporation, cell count); sequence/domain analysis The Journal of biological chemistry Medium 10918053
2002 COMMD5/HCaRG overexpression in renal epithelial HEK293 cells causes G2/M cell cycle arrest associated with upregulation of p21(Cip1/WAF1) and downregulation of p27(Kip1), and promotes a more differentiated phenotype (larger cell size, enhanced junctions, increased ANP-like immunoreactivity release). Stable transfection; cell cycle analysis by flow cytometry; Western blot for p21 and p27; [3H]thymidine incorporation; ANP immunoreactivity assay; electron microscopy for junctions American journal of physiology. Renal physiology Medium 12620924
2005 COMMD5/HCaRG overexpression increases renal cell migration via an autocrine TGF-alpha/EGF receptor signaling loop: HCaRG-expressing cells show elevated TGF-alpha synthesis and secretion, and conditioned medium from these cells stimulates migration and morphological changes in control cells, partially through EGF receptor activation. Stable transfection in HEK293 and MDCK-C7 cells; wound-healing/migration assays; expression microarrays; ELISA/Western blot for TGF-alpha; conditioned medium transfer experiments with EGF receptor pathway blockade American journal of physiology. Renal physiology Medium 16033922
2011 COMMD5/HCaRG overexpression in transgenic mice accelerates renal repair after ischemia/reperfusion injury: it reduces proximal tubular cell proliferation, hastens recovery of E-cadherin expression, attenuates vimentin induction, and reduces macrophage infiltration, consistent with facilitation of re-differentiation of tubular epithelial cells. Transgenic mouse model (human HCaRG overexpression); survival analysis; immunohistochemistry for E-cadherin, vimentin, Ki67; macrophage infiltration assays; renal function measurements Journal of the American Society of Nephrology : JASN Medium 21921141
2014 COMMD5/HCaRG facilitates p21 transactivation through a p53-independent signaling pathway in renal proximal tubular cells, contributing to cell cycle regulation during repair. Cell culture overexpression with p21 promoter assays; transgenic mouse model showing p53-independent p21 induction after ischemia/reperfusion injury Journal of nephrology Low 24515317
2017 COMMD5/HCaRG promotes de-phosphorylation of ErbB2/HER2 and causes epigenetic silencing (promoter methylation) of EGFR and ErbB3 gene expression, leading to inactivation of downstream ERK, AKT, and mTOR signaling in renal cell carcinoma cells. Overexpression in RCC cells and mouse homograft tumor model; Western blot for pErbB2, ERK, AKT, mTOR; bisulfite sequencing/methylation-specific PCR for EGFR and ErbB3 promoters; tumor size measurement in vivo Oncotarget Medium 29050225
2018 COMMD5 acts as an adaptor protein linking endosomes to the cytoskeleton: its N-terminal domain binds the endosomal GTPase Rab5, while its C-terminal COMMD domain binds cytoskeletal scaffolding components. COMMD5 is required for long-range endosomal transport, EGFR recycling, and assists vesicle scission into sorting endosomes. Silencing COMMD5 causes major reorganization of actin and microtubule networks. Co-immunoprecipitation/pulldown of N-terminus with Rab5 and C-terminus/COMMD domain with cytoskeletal proteins; domain deletion mapping; live-cell imaging of endosomal trafficking; EGFR recycling assays; siRNA silencing with cytoskeletal imaging Cell reports High 30021164
2023 Extracellular COMMD5 protein inhibits vasoconstriction in vascular rings with intact endothelium (but not in endothelium-denuded rings), and stimulates upregulation of ANP and eNOS expression in human umbilical vein endothelial cells, indicating a vasodilatory function dependent on endothelial signaling. Ex vivo vascular ring tension assays with intact vs. denuded endothelium; siRNA knockdown and COMMD5 stimulation in HUVECs; Western blot/qPCR for ANP and eNOS European journal of pharmacology Medium 36804542
2024 COMMD5 protects renal proximal tubular epithelial cells from cisplatin-induced oxidative stress by maintaining tubular epithelial integrity, reducing intracellular ROS and mitochondrial dysfunction, increasing autophagy flux through the autophagy/lysosome pathway, and decreasing JNK/caspase-3-dependent apoptosis. siRNA knockdown of COMMD5 reduced TEC resistance to cisplatin cytotoxicity. Transgenic mouse model (PT-specific COMMD5 overexpression) with cisplatin nephrotoxicity; siRNA knockdown in TECs; ROS measurement; mitochondrial function assays; autophagy flux assays (LC3, p62); Western blot for JNK and caspase-3; cell viability assays American journal of physiology. Renal physiology Medium 39298552

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 HCaRG, a novel calcium-regulated gene coding for a nuclear protein, is potentially involved in the regulation of cell proliferation. The Journal of biological chemistry 38 10918053
2002 HCaRG is a novel regulator of renal epithelial cell growth and differentiation causing G2M arrest. American journal of physiology. Renal physiology 23 12620924
2018 COMMD5/HCaRG Hooks Endosomes on Cytoskeleton and Coordinates EGFR Trafficking. Cell reports 21 30021164
2005 HCaRG increases renal cell migration by a TGF-alpha autocrine loop mechanism. American journal of physiology. Renal physiology 18 16033922
2017 HCaRG/COMMD5 inhibits ErbB receptor-driven renal cell carcinoma. Oncotarget 17 29050225
2008 Rosiglitazone suppresses gastric carcinogenesis by up-regulating HCaRG expression. Oncology reports 11 18949406
2011 HCaRG accelerates tubular repair after ischemic kidney injury. Journal of the American Society of Nephrology : JASN 10 21921141
2002 Chromosomal mapping of HCaRG, a novel hypertension-related, calcium-regulated gene. Folia biologica 7 11871861
2024 COMMD5 counteracts cisplatin-induced nephrotoxicity by maintaining tubular epithelial integrity and autophagy flux. American journal of physiology. Renal physiology 6 39298552
2014 Hypertension-related, calcium-regulated gene (HCaRG/COMMD5) and kidney diseases: HCaRG accelerates tubular repair. Journal of nephrology 6 24515317
2021 COMMD5 Inhibits Malignant Behavior of Renal Cancer Cells. Anticancer research 4 34083270
2023 COMMD5 is involved in the mechanisms of hypotension after parathyroidectomy in patients receiving hemodialysis. European journal of pharmacology 3 36804542
2021 Does Subtelomeric Position of COMMD5 Influence Cancer Progression? Frontiers in oncology 3 33768002
2025 Contrasting Role of COMMD5 in Renal Cell Carcinoma: Tumor Suppression and Metastatic Enhancement. Anticancer research 0 40155026

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