| 1995 |
CLCN3 encodes a 760-amino-acid protein belonging to the voltage-gated chloride channel (ClC) family, with high sequence similarity to GEF1 (a yeast integral membrane protein involved in respiration and iron-limited growth), indicating conserved fundamental function; the gene is expressed primarily in neuroectoderm-derived tissues, with high hippocampal, olfactory cortex, and olfactory bulb expression. |
Molecular cloning, sequence analysis, Northern blot/in situ hybridization |
Genomics |
Medium |
7665160
|
| 1999 |
ClC-3 volume-regulated chloride channel activity is controlled by phosphorylation/dephosphorylation: PKC activation closes the channel, PKC inhibition opens it, and serine51 in the intracellular N-terminus (within a consensus PKC phosphorylation site) is the critical volume sensor residue. |
Site-directed mutagenesis, patch-clamp electrophysiology in cardiac cells and NIH/3T3 cells overexpressing ClC-3 |
The Journal of general physiology |
High |
9874688
|
| 2000 |
When expressed in CHO-K1 cells, ClC-3 produces Cl->I- selective, extremely outward-rectifying currents insensitive to NPPB, DIDS, and phorbol esters and not activated by osmotic swelling—properties identical to ClC-5 and distinct from endogenous swelling-activated channels, demonstrating ClC-3 is not the swelling-activated channel under all conditions. |
Transient transfection of rat ClC-3 into CHO-K1 cells, whole-cell patch-clamp electrophysiology, pharmacological profiling |
The Journal of biological chemistry |
High |
10973952
|
| 2001 |
CaMKII phosphorylation regulates the plasma membrane expression and activity of hCLC-3: intracellular infusion of autonomously active CaMKII increased ClC-3 currents ~22-fold in stably transfected tsA cells, and mutation of glycine 280 to glutamic acid in the pore region changed anion selectivity from I->Cl- to Cl->I-. |
Stable transfection of hCLC-3 in tsA cells, whole-cell patch-clamp with CaMKII infusion, AIP inhibitor, pore-region mutagenesis, surface biotinylation |
The Journal of biological chemistry |
High |
11274166
|
| 2001 |
Intracellular dialysis of anti-ClC-3 antibody completely abolished expressed ClC-3 currents and native volume-sensitive outwardly rectifying anion channel (VSOAC) currents in guinea-pig cardiac cells, canine pulmonary arterial smooth muscle cells, and Xenopus oocytes, establishing ClC-3 as a major molecular entity of VSOACs in these cell types. |
Intracellular dialysis of polyclonal anti-ClC-3 antibody during whole-cell patch-clamp recording; antigen preabsorption controls |
The Journal of physiology |
High |
11230516
|
| 2002 |
Heterologous ClC-3 expression in CHO-K1 and Huh-7 cells promotes lysosomal acidification: overexpression creates large acidic vesicles co-labeled with LAMP-1, LAMP-2, and cathepsin D; vesicle formation requires both V-ATPase proton pumping and ClC-3 Cl- channel activity (blocked by E224A mutant), consistent with ClC-3 providing charge neutralization for lysosomal acidification. |
Heterologous overexpression, bafilomycin treatment, E224A mutagenesis, organelle pH measurement, co-localization with lysosomal markers |
American journal of physiology. Cell physiology |
High |
11997263
|
| 2002 |
CLC-3-deficient (Clcn3-/-) mice exhibit elevated endosomal pH, progressive neurodegeneration of hippocampus and retina, and lysosomal accumulation of mitochondrial F1F0 ATPase subunit c, phenocopying neuronal ceroid lipofuscinosis, establishing ClC-3 as required for endosomal acidification and lysosomal protein degradation. |
Targeted gene disruption (Clcn3-/- mice), endosomal pH measurement, immunohistochemistry, Western blot, histological analysis |
Genes to cells |
High |
12059962
|
| 2002 |
ClC-3 antisense oligonucleotides significantly reduce volume-sensitive osmolyte and anion channel (VSOAC) density and impair regulatory volume decrease in HeLa cells and Xenopus oocytes, supporting ClC-3 as a fundamental molecular component of VSOACs. |
ClC-3 antisense transfection/injection, semi-quantitative and real-time PCR, immunoblot, hypotonic whole-cell recording, cell volume measurement |
The Journal of biological chemistry |
Medium |
12183454
|
| 2002 |
ClC-3 is sorted to synaptic vesicles via an AP-3-dependent trafficking pathway; ClC-3 levels in synaptic vesicles and hippocampal mossy fiber terminals are reduced in AP-3-deficient mocha mice; in PC-12 cells ClC-3 trafficking to synaptic-like microvesicles is brefeldin A-sensitive; increased ClC-3 expression enhances vesicular zinc transport in concert with ZnT3, with which it co-segregates. |
AP-3-deficient mocha mouse model, subcellular fractionation, immunohistochemistry, brefeldin A treatment, ZnT3 co-fractionation and functional zinc transport assay |
The Journal of biological chemistry |
High |
15073168
|
| 2002 |
ClC-3B, a novel C-terminal splice variant of ClC-3, interacts with the PDZ domain of EBP50 via a C-terminal PDZ-binding motif; co-transfection of ClC-3B with EBP50 redistributes ClC-3B to the leading edge of membrane ruffles and produces a remarkable increase in ORCC currents that can be activated by CFTR via PKA-dependent pathway. |
Cloning, in vitro and in vivo binding assays (GST pulldown, co-IP), immunofluorescence, whole-cell patch-clamp |
FASEB journal |
High |
11967229
|
| 2004 |
CaMKII phosphorylates the N-terminus of CLC-3 in vitro, and serine 109 (S109) in the N-terminal CaMKII consensus sequence is critical for CaMKII-dependent Cl- conductance at the plasma membrane; S109A mutation abolishes the CaMKII-activated current. |
In vitro kinase phosphorylation assay, site-directed mutagenesis (S109A), whole-cell patch-clamp with CaMKII infusion in smooth muscle cells and HT29 cells, CLC-3-/- cells as negative control |
The Journal of physiology |
High |
14754994
|
| 2004 |
Neuronal excitability is modulated by CLC-3 at postsynaptic sites: CaMKII-activated CLC-3 Cl- conductance enhances NMDA receptor-mediated miniature EPSPs in a Cl--dependent fashion; CLC-3 co-immunoprecipitates with NMDA receptors and is localized at postsynaptic sites by electron microscopy and surface biotinylation; this conductance is absent in clc-3-/- mice. |
Patch-clamp electrophysiology in hippocampal neurons, surface biotinylation, immunohistochemistry, electron microscopy, co-immunoprecipitation, clc-3-/- knockout comparison |
Neuron |
High |
17046694
|
| 2007 |
ClC-3 overexpression in HEK293T cells induces pH-dependent outwardly rectifying currents with reversal potential shifts of ~10 mV/decade pH change and ~48 mV/decade Cl- change (non-Nernstian), indicating coupled Cl-/H+ antiport; E224A mutation removes pH sensitivity and restores Nernstian Cl- dependence, identifying E224 as the extracellular glutamate gate governing coupling. |
Heterologous overexpression in HEK293T, whole-cell patch-clamp, extracellular pH manipulation, E224A mutagenesis, reversal potential analysis |
American journal of physiology. Cell physiology |
High |
17977943
|
| 2007 |
ClC-3 is primarily an intracellular transport protein that traffics through the plasma membrane via clathrin-mediated endocytosis; the N-terminal dileucine acidic cluster (amino acids 13-19) interacts directly with clathrin (demonstrated by co-IP and GST pulldown), and alanine replacement of this motif reduces endocytosis, increases plasma membrane expression, and abolishes clathrin binding. |
Pulse-labeling, surface biotinylation, immunofluorescence, co-immunoprecipitation, GST pulldown, alanine-substitution mutagenesis |
The Journal of biological chemistry |
High |
17652080
|
| 2007 |
In vascular smooth muscle cells, Nox1 (NADPH oxidase subunit) and p22phox co-immunoprecipitate with early endosomal markers; ClC-3 co-localizes with Nox1 in early endosomes and is required for cytokine (TNF-α, IL-1β)-induced intraendosomal ROS production and subsequent NF-κB activation, functioning as a charge compensator for Nox1-generated electron flow across the endosomal membrane. |
Co-immunoprecipitation, co-localization by confocal microscopy, ROS measurement, NF-κB reporter assay, shRNA knockdown of ClC-3 |
Circulation research |
High |
17673675
|
| 2007 |
Hypotonic activation of the short ClC-3 isoform (sClC-3) requires direct interaction between its cytosolic C-terminal tail and filamentous (F-) actin, but not G-actin; the F-actin binding region maps to amino acids 690-760, and peptides disrupting this interaction reduce VSOAC current density by ~40-60% upon intracellular dialysis. |
GST pulldown/co-sedimentation assays with F-actin, truncation mapping, synthetic peptide competition, intracellular dialysis with peptides + patch-clamp |
The Journal of biological chemistry |
High |
17442672
|
| 2008 |
ClC-3 is required for CaMKII-dependent Cl- currents in glioma cells; CaMKII co-localizes and co-immunoprecipitates with ClC-3 in glioma cells and in GBM patient biopsies; shRNA knockdown of ClC-3 eliminates CaMKII-dependent currents, and inhibition of CaMKII reduces glioma invasion to the same extent as direct ClC-3 inhibition. |
Co-immunoprecipitation, whole-cell patch-clamp with CaMKII infusion, shRNA knockdown, AIP inhibitor, invasion assay |
The Journal of biological chemistry |
High |
20139089
|
| 2008 |
ClC-3 channels are required for premitotic cytoplasmic condensation (PMC) during cell division: patch-clamp shows upregulation of Cl- currents at M phase; ClC-3 is present on the plasma membrane and at the mitotic spindle (co-localization and co-IP); shRNA knockdown of ClC-3 reduces M-phase Cl- currents, slows PMC rate, and impairs DNA condensation. |
Patch-clamp electrophysiology at defined cell cycle stages, co-immunoprecipitation, immunofluorescence co-localization, shRNA knockdown |
The Journal of neuroscience |
High |
18784301
|
| 2008 |
Ins(3,4,5,6)P4 inhibits ClC-3-mediated Cl- conductance at the plasma membrane and raises intra-endosomal pH (inhibits ClC-3 Cl-/H+ exchange in endosomes), and also inhibits endogenous ClC-3 conductance in postsynaptic membranes of neonatal hippocampal neurons, identifying Ins(3,4,5,6)P4 as a physiological regulator of ClC-3. |
Heterologous expression in HEK293 cells, whole-cell patch-clamp, fluorescence ratio imaging of endosomal pH with FITC-transferrin, cell-permeant Ins(3,4,5,6)P4 analog |
Current biology |
High |
18951024
|
| 2008 |
ClC-3 localizes to endosomes and synaptic-like microvesicles (not large dense-core vesicles) in adrenal chromaffin and pancreatic beta cells; Clcn3-/- chromaffin cells show decreased exocytosis of large dense-core vesicles (capacitance measurements and amperometry), indicating an indirect role of ClC-3 in LDCV exocytosis through endosomal trafficking steps. |
Immunohistochemistry, subcellular fractionation, capacitance measurements, carbon-fiber amperometry, Clcn3-/- knockout mice |
The Journal of neuroscience |
High |
18923035
|
| 2009 |
ClC-3 Cl-/H+ exchange becomes uncoupled at low extracellular pH: between pH 8.2-6.2 protons shift the reversal potential, but below pH 6.2 Cl- transport and H+ transport uncouple; at pH 4.0 ClC-3 behaves as a purely anion-selective channel; extracellular cysteine residues (103-130 region) mediate MTSES-sensitivity; an E224A mutant lacks pH sensitivity and restores Nernstian Cl- dependence. |
Adenoviral ClC-3 expression in HEK293, whole-cell patch-clamp, pH and Cl- concentration manipulation, MTSES modification, mutagenesis (E224A, C103_P130del), shRNA knockdown of endogenous ClC-3 |
The Journal of biological chemistry |
High |
19926787
|
| 2009 |
ClC-3 is expressed on insulin secretory granules in pancreatic beta cells and is required for granule priming: Clcn3-/- beta cells show >60% reduction in glucose- and sulfonylurea-evoked insulin secretion, ~80% reduction in depolarization-evoked exocytosis (capacitance measurements), and 44% reduction in proton transport across granule membranes; ClC-3 on LDCVs was confirmed by immunoblot, immunostaining, and immunoelectron microscopy. |
Clcn3-/- knockout mice, insulin secretion assay, single-cell capacitance measurements, vesicle proton transport assay, immunoblot/immunostaining/immuno-EM of purified LDCVs |
Cell metabolism |
High |
19808023
|
| 2010 |
ClC-3 is a Cl-/H+ antiporter with biophysical properties similar to ClC-4 and ClC-5; an N-terminal retention signal keeps endogenous ClC-3 off the plasma membrane; N-terminal mutation (ClC-313-19A) allows surface expression and reveals outwardly rectifying coupled Cl-/H+ exchange; ClC-3 also exhibits large voltage-dependent nonlinear capacitance exceeding that of ClC-4 and ClC-5, and mutations of the proton glutamate decrease transport but increase capacitance. |
Electrophysiology combined with fluorescence pH measurements, N-terminal mutagenesis, proton glutamate mutagenesis, mathematical modeling |
ACS chemical neuroscience |
High |
23509947
|
| 2010 |
TNF-α activates swelling-activated Cl- current (ICl,swell) in vascular smooth muscle cells via ClC-3-dependent endosomal H2O2 production: ICl,swell was absent in ClC-3 null cells, was activated by H2O2, was blocked by catalase, and was abolished by dominant-negative Rab5 or Rab11 (disrupting endosome trafficking), establishing a mechanistic link between ClC-3 endosomal ROS generation and ICl,swell activation. |
Perforated patch-clamp, ClC-3 null mouse VSMCs, catalase treatment, dominant-negative Rab5/Rab11 expression, H2O2 challenge |
The Journal of biological chemistry |
High |
20479003
|
| 2011 |
Presynaptic CLC-3 on GABAergic synaptic vesicles is required for normal inhibitory transmission in hippocampus: Clcn3-/- slices show decreased amplitude and frequency of miniature IPSCs; CLC-3 co-localizes with VGAT in CA1; Cl--dependent acidification of inhibitory synaptic vesicles is markedly reduced in Clcn3-/- neurons, indicating CLC-3 enables neurotransmitter loading by supporting vesicle acidification. |
Hippocampal slice electrophysiology, immunofluorescence co-localization with VGAT, vesicle acidification assay with Cl- dependence, Clcn3-/- knockout |
Nature neuroscience |
High |
21378974
|
| 2011 |
CaMKII-dependent kinase activation of ClC-3 drives cytoplasmic condensation (PMC) during mitotic cell rounding in human glioma cells; time-lapse microscopy shows PMC is reduced by ClC-3 shRNA knockdown or KN-93 (CaMKII inhibitor); CaMKII activates ClC-3 Cl- currents in dividing cells, leading to Cl- efflux-driven volume decrease. |
Time-lapse microscopy, patch-clamp electrophysiology at mitosis, shRNA knockdown of ClC-3, CaMKII inhibitor KN-93 |
American journal of physiology. Cell physiology |
High |
22049206
|
| 2011 |
CLC-3 co-localizes with NMDA receptors at postsynaptic sites and its phosphorylation by CaMKII is required for its regulatory function in long-term potentiation (LTP): CLC-3 knockout increases LTP by ~40% above wild type; a decoy peptide of the CaMKII phosphorylation site on CLC-3 mimics the knockout effect on LTP, demonstrating that phosphorylated CLC-3 limits synaptic potentiation. |
Hippocampal slice LTP recordings, CLC-3 knockout mice, decoy phosphorylation peptide intracellular infusion |
The Journal of physiology |
High |
23165767
|
| 2012 |
ClC-3 deficiency results in larger synaptic vesicles and increased amplitude/frequency of miniature EPSCs and action-potential-evoked EPSCs in hippocampal neurons; low-affinity AMPA receptor antagonist γ-DGG reduces quantal size more in WT than Clcn3-/- neurons, indicating ClC-3 controls glutamate loading into synaptic vesicles and affects release probability, with excessive glutamate release as a likely basis of neurodegeneration. |
Whole-cell patch-clamp in cultured hippocampal neurons from Clcn3-/- mice, γ-DGG and NBQX receptor antagonism, electron microscopy of synaptic vesicle size, measurement of readily releasable pool |
Frontiers in cellular neuroscience |
High |
24904288
|
| 2013 |
Bradykinin-induced glioma chemotaxis requires CaMKII-dependent activation of ClC-3: bradykinin raises intracellular Ca2+, activates Ca2+-dependent Cl- currents via CaMKII→ClC-3 and KCa3.1; pharmacological CaMKII inhibition or shRNA knockdown of ClC-3 each inhibit Ca2+-activated Cl- currents and abolish bradykinin-induced chemotaxis; ClC-3 and KCa3.1 co-localize to invading processes of glioma cells. |
Fura-2 Ca2+ imaging, perforated patch-clamp electrophysiology, CaMKII inhibition, ClC-3 shRNA knockdown, brain slice invasion assay, immunofluorescence co-localization |
The Journal of neuroscience |
High |
23345219
|
| 2014 |
ClC-3 deficiency promotes intestinal epithelial cell apoptosis via the mitochondrial pathway and impairs Paneth cell function; ClC-3 interacts with voltage-dependent anion channel 1 (VDAC1, a regulator of mitochondrial cytochrome c release) by co-immunoprecipitation; DSS treatment decreases the ClC-3/VDAC1 interaction; ClC-3-/- mice show increased susceptibility to experimental colitis. |
Clcn3-/- knockout mice, dextran sulfate sodium/TNBS colitis models, co-immunoprecipitation of ClC-3 with VDAC1, apoptosis assays, Paneth cell counting, antimicrobial peptide expression |
Gut |
High |
24440986
|
| 2015 |
Three ClC-3 splice variants (ClC-3a, -3b, -3c) differ in subcellular targeting but mediate identical Cl-/H+ exchange: ClC-3a/b target to late endosomes/lysosomes via N-terminal dileucine-like motifs; ClC-3c targets to recycling endosomes via a novel N-terminal isoleucine-proline (IP) motif; all three produce equivalent outwardly rectifying Cl- currents with capacitive components. |
Identification of splice variants in mouse brain, immunofluorescence co-localization with compartment markers, site-directed mutagenesis of trafficking motifs, whole-cell patch-clamp |
The Journal of biological chemistry |
High |
26342074
|
| 2016 |
Angiotensin II-induced Cl- current in vascular smooth muscle cells requires ClC-3 channel phosphorylation at threonine 532 by Rho-kinase 2 (ROCK2): ROCK2 co-immunoprecipitates with ClC-3 N- and C-termini; ROCK2 siRNA abolishes AngII-induced current; T532D phosphomimetic mutant potentiates, while T532A abolishes, AngII-induced current and VSMC migration; AngII-induced cerebrovascular remodeling is reduced in ClC-3 null mice. |
Co-immunoprecipitation, N/C-terminal truncation constructs, site-directed mutagenesis (T532D, T532A), ROCK2 siRNA, whole-cell patch-clamp, transwell migration assay, ClC-3 null mice |
British journal of pharmacology |
High |
26562480
|
| 2017 |
ClC-4 sorting to endosomal compartments depends on its preferred heterodimerization with ClC-3: ClC-4 expressed alone is retained in ER; co-expression with ClC-3 splice variants redirects ClC-4 to late endosomes/lysosomes or recycling endosomes depending on which ClC-3 isoform is present; in Clcn3-/- astrocytes, ClC-4 is retained in the ER; high-resolution clear native PAGE shows ClC-3-ClC-4 heterodimers are more stable than ClC-4 homodimers. |
Heterologous co-expression, immunofluorescence co-localization, Clcn3-/- astrocytes, high-resolution clear native gel electrophoresis for oligomeric state analysis |
The Journal of biological chemistry |
High |
28972156
|
| 2018 |
Detailed mechanistic analysis of ClC-3 Cl-/H+ exchange: the external gating glutamate E224 and central tyrosine anion gate Y572 act as anion barriers and interact to form a 'closed gate' conformation that maintains coupling; Y572S removal increases uncoupled anion current and impairs coupling; M531A mutation predicted to improve water-wire H+ supply improves exchange efficiency; external protons (pH 5.0) inhibit transport and shift gating charge; ClC-3 has lower transport efficiency but identical coupling ratio compared to ClC-5. |
Plasma membrane-localized ClC-3, whole-cell patch-clamp, pH manipulation, gating charge (Q) analysis, cytoplasmic alkalization rate measurement, multiple mutagenesis (E224A, Y572S, Y572F, M531A) |
The Journal of physiology |
High |
29917234
|
| 2018 |
ClC-3 Cl-/H+ transporter regulates HER2 transcription in HER2-positive breast cancer cells through STAT3 signaling: ClC-3 siRNA knockdown in MDA-MB-453 cells markedly represses HER2 transcription and decreases STAT3 phosphorylation while increasing AKT phosphorylation. |
siRNA knockdown of ClC-3, qPCR and Western blot for HER2, phospho-AKT and phospho-STAT3 analysis, kinase inhibitors (AZD5363, everolimus, 5,15-DPP) |
Cancer science |
Medium |
29949674
|
| 2018 |
ClC-3 promotes angiotensin II-induced NADPH oxidase activation and ROS production in endothelial cells by facilitating Nox2/p22phox expression and p38 MAPK-dependent phosphorylation and membrane translocation of p47phox/p67phox to form the Nox2 NADPH oxidase complex. |
ClC-3 knockdown/overexpression in HUVECs, NADPH oxidase activity assay, ROS measurement, p47phox/p67phox membrane fractionation, p38 MAPK inhibitor SB203580, Western blot for complex components |
Acta pharmacologica Sinica |
Medium |
29977005
|
| 2021 |
De novo heterozygous missense variants and homozygous loss-of-function variants in CLCN3 cause neurodevelopmental disorders with GDD/ID and structural brain abnormalities; two missense variants (p.Ile607Thr and p.Thr570Ile) show increased currents at negative cytoplasmic voltages and loss of inhibition by luminal acidic pH in Xenopus oocytes and mammalian cells, demonstrating gain-of-function alterations in Cl-/H+ exchange gating. |
Whole-exome sequencing, electrophysiological characterization of variants in Xenopus oocytes and mammalian cells, clinical neuroimaging (MRI) |
American journal of human genetics |
High |
34186028
|
| 2012 |
VSMC migration requires ClC-3-dependent Ca2+-activated Cl- current (ICl.Ca): ICl.Ca is reduced ~50% in ClC-3 null VSMCs; the ClC-3-dependent component is activated by CaMKII (inhibited by KN-93) and inhibited by Ins(3,4,5,6)P4; ClC-3 null VSMCs show ~50% reduced migration in transwell assays; wild-type cell migration is reduced by niflumic acid, KN-93, or Ins(3,4,5,6)P4 but not in ClC-3 null cells. |
Whole-cell patch-clamp in WT and ClC-3 null VSMCs, CaMKII inhibitor, Ins(3,4,5,6)P4, transwell migration assay, Clcn3-/- genetic knockout |
Hypertension |
High |
23150504
|
| 2008 |
Cardiac-specific inducible ClC-3 knockout eliminates native VSOAC currents in atrial and ventricular myocytes and causes myocardial hypertrophy and heart failure, establishing ClC-3 as the key molecular component of native VSOACs in mammalian heart and demonstrating a cardioprotective role. |
Inducible cardiac-specific Cre/lox ClC-3 knockout mice, echocardiography, patch-clamp of isolated cardiomyocytes, qRT-PCR and Western blot for ClC-3 loss |
Journal of molecular and cellular cardiology |
High |
19615374
|
| 2022 |
HNRNPK is identified as a transcription factor that directly binds the CLCN3 promoter (binding motif 'GCGAGG', binding site -538/-248 bp) and drives CLCN3 transcription; HNRNPK knockdown suppresses CLCN3 promoter activity and mRNA/protein expression; reduced extracellular ClC-3 secretion from HNRNPK-silenced cells inhibits cancer-associated fibroblast (CAF) activation and TGF-β1 production. |
5'-biotin-labeled promoter pulldown assay to identify HNRNPK, promoter activity reporter assays, shRNA knockdown, RNA-seq, xenograft mouse model, CAF isolation and functional assays |
International journal of biological sciences |
Medium |
36439880
|