| 2010 |
VDAC1 is a target for Parkin-mediated Lys27 poly-ubiquitylation during PINK1/Parkin-directed mitophagy; PINK1 kinase activity and mitochondrial localization are prerequisites for Parkin translocation to depolarized mitochondria, after which Parkin ubiquitylates VDAC1 to recruit the autophagic adaptor p62/SQSTM1 for mitochondrial clearance. |
siRNA knockdown, co-immunoprecipitation, ubiquitin chain-linkage analysis, cell-based mitophagy assays in non-neuronal and neuronal cells |
Nature cell biology |
High |
20098416
|
| 2020 |
VDAC1 can be either mono- or poly-ubiquitinated by Parkin in a PINK1-dependent manner; poly-ubiquitination is required for mitophagy induction, whereas mono-ubiquitination at K274 suppresses apoptosis by limiting mitochondrial calcium uptake through the MCU channel. VDAC1 K274R mutation (blocking monoubiquitination) promotes apoptosis and Parkinson disease-related phenotypes in Drosophila. |
Ubiquitin mutant expression, transgenic Drosophila genetics, mitochondrial calcium measurements, MCU suppression epistasis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
32047033
|
| 2005 |
Influenza virus PB1-F2 protein physically interacts with VDAC1 on the outer mitochondrial membrane (and with ANT3 on the inner membrane), triggering mitochondrial permeability transition, cytochrome c release, and enhancement of tBid-induced membrane permeabilization; permeability transition pore blockers inhibit PB1-F2-induced permeabilization. |
GST pulldown with mass spectrometry, purified mitochondria permeabilization assay, pharmacological PTPC inhibition |
PLoS pathogens |
High |
16201016
|
| 2009 |
Nek1 kinase physically associates with VDAC1 and phosphorylates it on serine 193; this phosphorylation is required to maintain normal mitochondrial membrane permeability and prevent excessive cell death. A phospho-mimetic S193E mutant rescues exaggerated MMP after DNA damage, while a non-phosphorylatable S193A mutant induces cell death. |
Yeast two-hybrid, GST pulldown, reciprocal immunoprecipitation, kinase-dead mutant expression, siRNA knockdown, mitochondrial membrane permeability assays, VDAC1 phospho-mutant rescue experiments |
Cell cycle (Georgetown, Tex.) |
High |
19158487
|
| 2014 |
TSPO binds VDAC1 on the outer mitochondrial membrane; this interaction reduces mitochondrial coupling, promotes ROS overproduction, and thereby counteracts PARK2-mediated ubiquitination of proteins, inhibiting PINK1-PARK2-dependent mitophagy and abolishing SQSTM1/p62 and LC3 recruitment to mitochondria. |
Co-immunoprecipitation, VDAC1 knockdown/overexpression, mitophagy flux assays, ROS measurements, PARK2-ubiquitination assays |
Autophagy |
Medium |
25470454
|
| 2008 |
In cisplatin-induced apoptosis, VDAC1 acts downstream of Bak and upstream of Bax in a hierarchical pathway governing mitochondrial membrane permeabilization; VDAC1 knockdown or chemical inhibition prevents Bax conformational activation without affecting Bak activation. |
siRNA screen, VDAC1 chemical inhibition (DIDS), Bax/Bak knockdown epistasis, mitochondrial membrane potential assay, plasma membrane permeabilization assay |
Oncogene |
Medium |
18362892
|
| 2012 |
Bcl-xL directly interacts with VDAC1; the interaction requires specific VDAC1 residues including the N-terminal domain, reduces VDAC1 channel conductance in bilayer reconstitution, and mediates Bcl-xL antiapoptotic activity, since Bcl-xL fails to protect against apoptosis in cells expressing VDAC1 mutants that cannot bind Bcl-xL. |
Microscale thermophoresis, bilayer-reconstituted conductance assay, surface plasmon resonance, site-directed mutagenesis, cell viability assays with staurosporine |
The Journal of biological chemistry |
High |
22589539
|
| 2003 |
VDAC1 expressed in the plasma membrane functions as a NADH-ferricyanide reductase; purified VDAC1 from both plasma membrane and mitochondria fractions exhibits this enzymatic activity, and targeting VDAC1 to the plasma membrane via an N-terminal signal peptide significantly increases cellular NADH-ferricyanide reductase activity. |
Subcellular fractionation, immunoprecipitation of enzymatic activity, VDAC1-GFP plasma-membrane targeting construct, confocal microscopy, FACS, enzymatic activity assay |
The Journal of biological chemistry |
Medium |
14573604
|
| 2008 |
Hexokinase I and II bind VDAC1 through charged residues in several beta-strands and the N-terminal domain; disrupting the HK-VDAC1 interaction by mutagenesis or VDAC1-based peptides detaches HK from mitochondria, diminishes HK antiapoptotic activity, and reduces tumor cell survival. |
Site-directed mutagenesis of VDAC1, VDAC1-based peptide expression, HK-I-GFP mitochondrial localization assay, apoptosis assays |
Biochimica et biophysica acta |
Medium |
19094960
|
| 2008 |
Phosphorylated StAR interacts with VDAC1 on the outer mitochondrial membrane; this interaction facilitates processing of 37-kDa phospho-StAR to the 32-kDa intermediate required for steroidogenesis. In the absence of VDAC1, phospho-StAR is degraded by cysteine proteases before mitochondrial import. |
Co-immunoprecipitation, VDAC1 knockdown, protease inhibitor experiments, biochemical processing assays |
The Journal of biological chemistry |
Medium |
18250166
|
| 2011 |
VDAC1 oligomerization contact sites involve beta-strands 1, 2, 16, and 19; replacing hydrophobic residues in these strands with charged residues interferes with oligomerization. Cysteine-scanning cross-linking confirms proximity of these strands in dimers. VDAC1 exists as a dimer under physiological conditions and undergoes conformational changes to higher oligomers upon apoptosis induction. |
Structure-based mutagenesis, cysteine-replacement cross-linking with BMOE, chemical cross-linking, computation-guided dimerization interface prediction |
The Journal of biological chemistry |
High |
22117062
|
| 2010 |
VDAC1 cysteine residues Cys127 and Cys232 have distinct topologies: one faces the pore (accessible to bulky 5-FM but blocked by prior NEM labeling) and one faces the lipid bilayer. However, cysteine-less VDAC1 (both Cys→Ala) retains normal channel activity and supports apoptosis when overexpressed, demonstrating that the cysteines are not required for channel gating or apoptotic function. |
Bilayer reconstitution conductance assay, thiol-modifying agents (NEM, 5-FM, BMOE), cysteine-to-alanine mutagenesis, cell apoptosis assay, mitochondrial localization by fluorescence |
The Biochemical journal |
High |
20192921
|
| 2015 |
Itraconazole targets VDAC1 as its primary molecular target in endothelial cells; VDAC1 inhibition disrupts mitochondrial metabolism, raises the AMP:ATP ratio, activates AMPK, and thereby inhibits mTOR signaling. VDAC1-knockout cells are resistant to AMPK activation and mTOR inhibition by itraconazole, demonstrating VDAC1 as the mediator. |
VDAC1 knockdown and knockout cell lines, cellular thermal shift assay (implied by target identification), AMPK/mTOR pathway western blots, AMP:ATP ratio measurements, VDAC1-KO rescue experiments |
Proceedings of the National Academy of Sciences of the United States of America |
High |
26655341
|
| 2013 |
Elevated intracellular Ca2+ promotes VDAC1 oligomerization and apoptosis; Ca2+ chelation with BAPTA-AM inhibits VDAC1 oligomerization and apoptosis, while Ca2+ ionophore treatment induces VDAC1 oligomerization in the absence of other apoptotic stimuli. Inhibition of mitochondrial Ca2+ transport decreases VDAC1 oligomerization, and increased [Ca2+]i upregulates VDAC1 expression. |
Chemical cross-linking to monitor oligomerization, Ca2+ chelator (BAPTA-AM), Ca2+ ionophore treatment, AzRu-mediated inhibition of mitochondrial Ca2+ transport, cell apoptosis assays |
Biochimica et biophysica acta |
Medium |
23542128
|
| 2016 |
DIDS and related anion transport inhibitors (SITS, H2DIDS, DNDS, DPC) directly interact with VDAC1 (shown by microscale thermophoresis and reduced bilayer conductance), inhibit VDAC1 oligomerization, and consequently suppress pro-apoptotic protein release, apoptosis, Ca2+ elevation, ROS production, and mitochondrial membrane potential dissipation. |
Microscale thermophoresis, bilayer-reconstituted VDAC1 conductance, chemical cross-linking, BRET2 in living cells, apoptosis assays |
Biochimica et biophysica acta |
High |
27064145
|
| 2016 |
Novel compounds (VBIT-3 and VBIT-4) directly interact with VDAC1, prevent VDAC1 oligomerization, inhibit apoptosis, restore mitochondrial membrane potential, decrease ROS production, prevent hexokinase detachment from mitochondria, and normalize intracellular Ca2+ levels. |
High-throughput compound screening, direct VDAC1 binding assays, chemical cross-linking for oligomerization, mitochondrial membrane potential assay, ROS assay, hexokinase binding assay, cell viability assays |
The Journal of biological chemistry |
Medium |
27738100
|
| 2015 |
Cyathin-R, a fungal diterpene, promotes VDAC1 oligomerization to mediate cytochrome c release and apoptosis in Bax/Bak-deficient cells; VDAC1 silencing prevents cyathin-R-induced apoptosis, demonstrating that VDAC1 can mediate apoptosis independently of Bax/Bak. |
Bax/Bak-deficient MEF cells, VDAC1 siRNA knockdown, chemical cross-linking for oligomerization, cytochrome c release assay, xenograft mouse model |
The Journal of biological chemistry |
Medium |
26253170
|
| 2019 |
Mutant SOD1 (G93A and G85R, but not wild-type SOD1) directly interacts with the N-terminal domain of VDAC1, reducing its channel conductance; a VDAC1 N-terminal domain-derived peptide inhibits mutant SOD1 toxicity in motor neuron-like cells and mouse embryonic stem cell-derived motor neurons. |
Direct binding assay with purified VDAC1, bilayer conductance measurement, N-terminally truncated VDAC1 construct, cell viability assay with peptide treatment |
Frontiers in cellular neuroscience |
Medium |
31474832
|
| 2023 |
Under hypoxia, GPCPD1 is depalmitoylated by LYPLA1 and relocates to the outer mitochondrial membrane where it binds VDAC1, interferes with VDAC1 oligomerization, increasing VDAC1 monomers, which provide more anchor sites for PRKN-mediated polyubiquitination and consequent mitophagy induction. |
Co-immunoprecipitation, VDAC1 oligomerization assay (chemical cross-linking), PRKN ubiquitination assay, GPCPD1 depalmitoylation/localization tracking, siRNA knockdown |
Autophagy |
Medium |
36803235
|
| 2023 |
Parkin ubiquitinates VDAC1 at lysine 53; this site-specific ubiquitination interrupts VDAC1 oligomerization and prevents mitochondrial DNA release into the cytoplasm. VDAC1 K53R mutant (ubiquitination-deficient) forms oligomers resistant to Parkin suppression and triggers STING pathway activation in hepatic stellate cells. |
Site-directed mutagenesis (K53R), E3 ligase activity assay, VDAC1 oligomerization assay, mtDNA release assay, STING signaling readout, Parkin knockout mice |
Experimental & molecular medicine |
High |
36658227
|
| 2021 |
HKII and VDAC1 form a binary complex in which HKII partially (not completely) occludes VDAC1's permeation pathway after membrane insertion of HKII's H-anchor. Phosphorylation of VDAC1 disrupts HKII binding, as confirmed by electrophysiology. |
Molecular dynamics simulations, Brownian dynamics docking, electrophysiology (channel conductance in presence/absence of HKII), VDAC1 phosphorylation mimetics |
Communications biology |
Medium |
34083717
|
| 2020 |
TLK1 phosphorylates Nek1 at T141, and this activating phosphorylation contributes to Nek1-mediated phosphorylation and stability of VDAC1, thereby maintaining mitochondrial membrane integrity. Cells overexpressing kinase-dead Nek1-T141A show reduced VDAC1 phosphorylation, exaggerated mitochondrial permeability, reduced mitochondrial respiration, and increased apoptosis. |
Nek1-T141A mutant overexpression, VDAC1 phosphorylation western blot, mitochondrial permeability/cytochrome c release assay, oxygen consumption measurements, drug sensitivity assays |
Cell cycle (Georgetown, Tex.) |
Medium |
31914854
|
| 2018 |
VDAC1 and VDAC2 cysteine residues from rat liver mitochondria undergo over-oxidation and succination as post-translational modifications, with cysteine over-oxidation appearing to be an exclusive feature of VDACs not found in other transmembrane mitochondrial proteins. |
Tryptic and chymotryptic proteolysis, UHPLC/High-Resolution ESI-MS/MS |
Biochimica et biophysica acta. Bioenergetics |
Medium |
29890122
|
| 2010 |
Loss of Drosophila Porin (VDAC) causes elongated mitochondria in indirect flight muscle, while Porin overexpression produces fragmented mitochondria. Genetic epistasis with Drp1 (fission) and mitofusins (fusion) demonstrates that Porin regulates mitochondrial morphology through the fission/fusion machinery, and increased mitochondrial fission rescues locomotor defects in porin mutants. |
Drosophila porin mutant generation, mitochondrial morphology imaging, genetic epistasis with Drp1 and mitofusin mutants, locomotor behavior assays |
PloS one |
Medium |
20949033
|
| 2019 |
In yeast (Por1/VDAC ortholog), porin associates with Tom22 to act as a sink for newly imported Tom22, modulating Tom22 integration into the TOM complex and thereby regulating the dynamic equilibrium between trimeric (3-channel, Tom22-containing) and dimeric (2-channel) TOM complexes. Porin also facilitates import of TIM40/MIA-dependent proteins by promoting the dimeric TOM complex. |
Co-immunoprecipitation, in vitro import assays, TOM complex native gel analysis, cell-cycle-dependent Tom22 phosphorylation analysis |
Molecular cell |
Medium |
30738703
|
| 2018 |
Yeast porins (Por1/Por2) interact with Mdm31 and Mdm35, and their depletion destabilizes Ups1 and Ups2, decreases cardiolipin levels by ~90%, and abolishes Ups2-dependent phosphatidylethanolamine synthesis. Por1 mutations that disrupt Mdm31/Mdm35 interactions (without affecting respiratory growth) also decrease cardiolipin levels, demonstrating a specific role in mitochondrial phospholipid metabolism conserved to mammalian VDAC. |
Yeast two-hybrid, co-immunoprecipitation, lipidomic analysis, Por1 interaction-defective mutants, HeLa cell VDAC knockdown |
The Journal of biological chemistry |
Medium |
30237174
|
| 2022 |
VDAC1 downregulation by shRNA in human erythroblasts accelerates early maturation but blocks differentiation at the orthochromatic stage, reducing enucleation and increasing cell death. VDAC1 is required for phagophore membrane recruitment to regulate selective mitophagy of functional mitochondria during terminal erythropoiesis. |
shRNA knockdown, erythroid differentiation staging, mitochondrial retention assay, mitophagy flux assay, confocal microscopy |
Haematologica |
Medium |
33406813
|
| 2022 |
Wild-type ataxin-3 deubiquitinates VDAC1; in SCA3 patients with expanded ataxin-3, VDAC1 deubiquitination and Parkin recruitment to depolarized mitochondria are inhibited, leading to impaired canonical mitophagy and compensatory increase in p62-linked mitophagy and autophagy. |
Patient-derived fibroblast cell lines, VDAC1 ubiquitination assay, Parkin translocation assay, mitophagy flux, OXPHOS complex measurement, ATP production assay |
International journal of molecular sciences |
Medium |
35682609
|
| 1991 |
Porin (VDAC) interacts with hexokinase and glycerol kinase on the outer mitochondrial membrane surface, providing these enzymes with preferred access to mitochondrially-generated ATP through metabolic microcompartmentation. |
Biochemical interaction studies, mitochondrial outer membrane protein binding assays (review of primary experimental evidence) |
Biochemical medicine and metabolic biology |
Low |
1710914
|
| 2023 |
MCU upregulation by cadmium intensifies MCU-VDAC1 interaction, enhances VDAC1 dimerization and ubiquitination, causing excessive mitophagy and hepatotoxicity; MCU inhibition (siRNA or Ru360) attenuates VDAC1 dimerization, excessive mitophagy, and hepatocyte death. |
Co-immunoprecipitation, VDAC1 oligomerization assay, siRNA knockdown, MCU heterozygous knockout mice, mitophagy flux assay |
Advanced science (Weinheim, Baden-Wurttemberg, Germany) |
Medium |
36642847
|
| 2025 |
VSTM2L forms a complex with VDAC1 and hexokinase 2 (HK2), enhancing their binding affinity and preventing VDAC1 oligomerization, thereby inhibiting ferroptosis and maintaining mitochondrial homeostasis in prostate cancer cells. |
Co-immunoprecipitation, VDAC1 oligomerization assay, siRNA knockdown, in vitro and in vivo ferroptosis assays |
Nature communications |
Medium |
39880844
|
| 2018 |
Zinc and p53 disrupt mitochondrial binding of HK2 to VDAC1 in prostate cancer cells by phosphorylating VDAC1, a process mediated through Akt inhibition and GSK3β activation. |
Mitochondrial fractionation, co-immunoprecipitation of HK2-VDAC1, VDAC1 phosphorylation western blot, Akt/GSK3β pharmacological inhibition, xenograft model |
Experimental cell research |
Medium |
30528266
|
| 2023 |
BAP31 directly binds VDAC1 and affects its oligomerization and polyubiquitination; BAP31 knockdown increases lipid peroxidation and facilitates ferroptosis, while BAP31 overexpression inhibits ferroptosis. HNF4A binds the BAP31 promoter and increases its transcription, placing VDAC1 oligomerization downstream of this HNF4A-BAP31 axis. |
Co-immunoprecipitation, VDAC1 oligomerization assay, ubiquitination assay, siRNA knockdown, lipid peroxidation assay, ChIP for HNF4A-BAP31 promoter interaction |
Cell death & disease |
Medium |
37296105
|
| 2021 |
VDAC1 promotes cardiomyocyte autophagy in anoxia/reoxygenation injury via the PINK1/Parkin pathway; VDAC1 knockdown inhibits PINK1/Parkin activation and Parkin translocation to mitochondria, reducing autophagic vacuole formation, ROS burst, and mitochondrial dysfunction. |
siRNA knockdown, autophagic flux assay, Parkin translocation immunofluorescence, ROS measurement, mitochondrial membrane potential assay |
Cell biology international |
Low |
33675282
|
| 2023 |
Alisol B directly binds VDAC1 at amino acid residues S196 and H184 in the ATP-binding region; mutations at these sites abolish the thermal stabilization effect of Alisol B on VDAC1, and VDAC1 binding mediates Alisol B's ability to decrease mitochondrial ATP production and activate AMPK independently of canonical upstream kinases. |
Cellular thermal shift assay (CETSA), molecular dynamics, ultrafiltration-LC/MS, site-directed mutagenesis of VDAC1 (S196 and H184 mutations), AMP:ATP ratio measurement |
Phytomedicine : international journal of phytotherapy and phytopharmacology |
Medium |
38520833
|
| 1985 |
Mitochondrial porin (VDAC) forms large pores permeable to hydrophilic substances up to ~6000 Da, with pore diameter of 1.2–2 nm, and pore conductance is controlled by electric fields and metabolic processes. These properties were established in early electrophysiological characterization. |
Planar lipid bilayer electrophysiology, molecular sieving assays |
CRC critical reviews in biochemistry |
Medium |
2415299
|