Affinage

CFAP263

Cilia- and flagella-associated protein 263 · UniProt Q9H0I3

Length
377 aa
Mass
44.2 kDa
Annotated
2026-06-09
12 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CFAP263/CCDC113 is an evolutionarily conserved coiled-coil adaptor protein that organizes the axonemal machinery governing ciliary and flagellar motility (PMID:33661892, PMID:39671309). In cilia it forms an evolutionarily conserved complex with CCDC96 positioned parallel to the nexin-dynein regulatory complex (N-DRC), physically linking radial spoke 3 to dynein g and the N-DRC; its stable docking requires co-presence of CCDC96, and its loss alters ciliary beat frequency, amplitude, and waveform (PMID:33661892). In mouse sperm it serves the analogous adaptor role, binding CFAP57 and CFAP91 to connect radial spokes, the N-DRC, and doublet microtubules, and additionally acts as a structural component of the head-tail coupling apparatus together with SUN5 and CENTLEIN to join the sperm head to the flagellum during spermiogenesis (PMID:39671309). Loss of CCDC113 produces disorganized flagella and head-tail coupling defects, and biallelic loss-of-function mutations cause oligoasthenoteratozoospermia and male infertility in humans, recapitulated in knockout mice (PMID:39671309, PMID:41645397). In cultured somatic cells CCDC113 localizes to centriolar satellites in a complex with HAP1 and PCM1 and is required for primary cilium formation (PMID:25074808). A distinct role in promoting colorectal cancer cell proliferation and migration via TGF-β signaling has also been reported (PMID:39261464).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2014 Medium

    Identifying CCDC113 at centriolar satellites and in complex with established satellite proteins placed it within the ciliogenesis machinery of somatic cells before its axonemal role was known.

    Evidence Mass spectrometry of sperm centrioles, immunofluorescence, reciprocal Co-IP with HAP1 and PCM1, and loss-of-function assay for cilium formation in cultured cells

    PMID:25074808

    Open questions at the time
    • Did not define the molecular function of the protein within the satellite complex
    • Mechanism by which it supports cilium assembly not resolved
    • No axonemal structural role established at this stage
  2. 2021 High

    Genetic and structural dissection in ciliate/algal models established CCDC113 as a structural adaptor wiring radial spoke 3 to dynein g and the N-DRC, defining how it regulates beat pattern.

    Evidence Genetic deletion, axonemal structural analysis, ciliary beat frequency/waveform measurements, and CCDC113/CCDC96 epistasis

    PMID:33661892

    Open questions at the time
    • Atomic-resolution structure of the CCDC113-CCDC96 complex not determined
    • Mechanism linking the structural connection to specific waveform changes not detailed
    • Conservation of the role in mammalian sperm not yet tested at this point
  3. 2024 High

    A knockout mouse and binding studies extended the adaptor role to sperm and revealed a second function in the head-tail coupling apparatus, connecting axonemal organization to whole-flagellum and head-tail integrity.

    Evidence Co-IP mapping binding to CFAP57, CFAP91, SUN5, and CENTLEIN; knockout mouse; TEM ultrastructure; fertility assays

    PMID:39671309

    Open questions at the time
    • Whether CCDC96 partnership is conserved in mammalian sperm not addressed
    • Stoichiometry and direct vs indirect nature of HTCA interactions not resolved
    • How the two roles (axoneme vs HTCA) are temporally coordinated unclear
  4. 2024 Medium

    A reported cancer phenotype linked CCDC113 to TGF-β signaling in a context distinct from its ciliary structural role.

    Evidence RNA-seq, TCGA analysis, overexpression/knockdown in CRC lines, in vitro and in vivo tumor assays, and galunisertib rescue

    PMID:39261464

    Open questions at the time
    • Direct molecular link between CCDC113 and TGF-β pathway components not defined
    • Relationship to its ciliary/centriolar function unexplained
    • Single-lab finding without orthogonal mechanistic validation
  5. 2026 Medium

    Human genetics confirmed CCDC113 as a disease gene, tying loss-of-function and reduced protein stability to oligoasthenoteratozoospermia.

    Evidence Whole-exome sequencing of patients, protein stability analysis of variants, and knockout mouse recapitulation with sperm morphology/motility and ultrastructural assays

    PMID:41645397

    Open questions at the time
    • Genotype-phenotype correlation across additional patients limited
    • Mechanism by which point mutations destabilize the protein not detailed
    • Single-lab cohort

Open questions

Synthesis pass · forward-looking unresolved questions
  • How CCDC113's conserved axonemal adaptor function relates mechanistically to its reported somatic and oncogenic roles remains unresolved.
  • No high-resolution structure of CCDC113 in any complex
  • Unclear whether the centriolar-satellite and axonemal roles share a common molecular activity
  • Mechanistic basis of the TGF-β connection unestablished

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0060090 molecular adaptor activity 2
Localization
GO:0005929 cilium 3 GO:0005856 cytoskeleton 2 GO:0005815 microtubule organizing center 1
Pathway
R-HSA-1474165 Reproduction 2 R-HSA-1852241 Organelle biogenesis and maintenance 1
Complex memberships
CCDC113-CCDC96 complexcentriolar satellite (HAP1-PCM1) complexhead-tail coupling apparatus

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 CCDC113 (CFAP263) localizes to centriolar satellites in cultured cells, forms a complex with satellite proteins HAP1 and PCM1, and is required for primary cilium formation, as determined by mass spectrometry of sperm centrioles followed by localization and functional studies in cultured cells. Mass spectrometry of sperm centrioles; immunofluorescence localization; co-immunoprecipitation with HAP1 and PCM1; loss-of-function assay for primary cilium formation Journal of cell science Medium 25074808
2021 Ccdc113 (CFAP263) forms an evolutionarily conserved complex with Ccdc96 in cilia, positioned parallel to the nexin-dynein regulatory complex (N-DRC), connecting radial spoke 3 (RS3) to dynein g and N-DRC. Deletion of CCDC113 alters ciliary beating frequency, amplitude, and waveform. Stable docking and function of Ccdc113 requires co-presence of Ccdc96, although each protein can be transported to cilia independently. Genetic deletion; structural analysis of axoneme; ciliary beat frequency and waveform measurements; epistasis between Ccdc113 and Ccdc96 knockouts PLoS genetics High 33661892
2024 CCDC113 (CFAP263) in mouse sperm acts as an adaptor protein connecting radial spokes, the nexin-dynein regulatory complex (N-DRC), and doublet microtubules (DMTs) in the sperm axoneme by binding to CFAP57 and CFAP91. Additionally, CCDC113 is a structural component of the head-tail coupling apparatus (HTCA), collaborating with SUN5 and CENTLEIN to connect sperm head to tail during spermiogenesis. Disruption of CCDC113 produces spermatozoa with disorganized flagella and HTCA, causing male infertility in mice. Co-immunoprecipitation (binding to CFAP57 and CFAP91, SUN5, CENTLEIN); knockout mouse model; ultrastructural analysis (TEM); fertility assays eLife High 39671309
2024 CCDC113 (CFAP263) promotes colorectal cancer cell proliferation and migration via the TGF-β signaling pathway; the TGF-β pathway inhibitor galunisertib reverses the increased proliferation and migration caused by CCDC113 overexpression both in vitro and in vivo. RNA-seq; TCGA database analysis; overexpression and knockdown in CRC cell lines; in vitro proliferation/migration assays; in vivo tumor models; pharmacological inhibition with galunisertib Cell death & disease Medium 39261464
2026 Biallelic loss-of-function mutations in CCDC113 (p.K301Q and p.E135A) in humans cause oligoasthenoteratozoospermia with defective sperm flagella and less stable CCDC113 protein. Ccdc113 knockout mice recapitulate the human infertility phenotypes, including abnormal sperm morphology, impaired motility, and defective spermatogenesis. Whole-exome sequencing; functional protein stability analysis; Ccdc113 knockout mouse model; sperm morphology and motility assays; ultrastructural analysis Asian journal of andrology Medium 41645397

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Proteomic analysis of mammalian sperm cells identifies new components of the centrosome. Journal of cell science 93 25074808
2021 Ccdc113/Ccdc96 complex, a novel regulator of ciliary beating that connects radial spoke 3 to dynein g and the nexin link. PLoS genetics 38 33661892
2021 Different combinations of high-frequency rTMS and cognitive training improve the cognitive function of cerebral ischemic rats. Brain research bulletin 13 34280480
2024 CCDC113 promotes colorectal cancer tumorigenesis and metastasis via TGF-β signaling pathway. Cell death & disease 11 39261464
2024 CCDC113 stabilizes sperm axoneme and head-tail coupling apparatus to ensure male fertility. eLife 9 39671309
2022 Looking for the Genes Related to Lung Cancer From Nasal Epithelial Cells by Network and Pathway Analysis. Frontiers in genetics 7 35923697
2023 A robust mRNA signature obtained via recursive ensemble feature selection predicts the responsiveness of omalizumab in moderate-to-severe asthma. Clinical and translational allergy 5 38006387
2025 Genetics of Childhood-Onset Systemic Lupus Erythematosus. Arthritis & rheumatology (Hoboken, N.J.) 4 40356234
2025 Cross-Phenotype Genome-Wide Association Study on the Shared Genetic Susceptibility to Systemic Sclerosis and Primary Biliary Cholangitis. Arthritis & rheumatology (Hoboken, N.J.) 3 39676709
2024 Cross-Phenotype GWAS Supports Shared Genetic Susceptibility to Systemic Sclerosis and Primary Biliary Cholangitis. medRxiv : the preprint server for health sciences 1 39006426
2026 Loss-of-function mutations in Ccdc113 cause male infertility in both humans and mice. Asian journal of andrology 0 41645397
2026 A Novel Circular RNA circSPEF2 Regulates Testis Development in Crucian Carp. Biology 0 42117808

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