Affinage

CCND3

G1/S-specific cyclin-D3 · UniProt P30281

Length
292 aa
Mass
32.5 kDa
Annotated
2026-06-13
33 papers in source corpus 15 papers cited in narrative 15 extracted findings
Cross-family judge vs UniProt: tie

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CCND3 (Cyclin D3) is a D-type cyclin that drives G1/S cell cycle progression by partnering with CDK4 (and CDK6) to phosphorylate the Rb tumor suppressor, and its expression is gated by mitogenic and hormonal cues — glucocorticoids suppress both CCND3 and CDK4 to lower Rb phosphorylation and enforce G0 arrest, while CCND3 overexpression restores Rb-kinase activity and confers apoptosis resistance (PMID:7664296). Its abundance is set at multiple regulatory tiers: transcriptionally by FOXO1 in B-ALL (PMID:35013097), translationally through PTBP1 binding to its 5'-UTR (PMID:31301177) and METTL5-mediated 18S rRNA m6A modification that boosts translation efficiency (PMID:41743013), and through numerous miRNAs that directly target its transcript (miR-592, miR-212, miR-4779, miR-15b) to drive cell-cycle arrest and apoptosis upon CCND3 loss (PMID:26144250, PMID:26064240, PMID:27493231, PMID:29362401). Beyond the kinase complex, CCND3 has a CDK4/6-independent pro-survival role that includes promoting CDK8 transcription, such that its elevation drives palbociclib resistance (PMID:35013097), and it limits epithelial-mesenchymal transition by facilitating PARK2-mediated ubiquitination and degradation of vimentin, with its loss promoting metastasis and chemoresistance (PMID:39781469). CCND3 also acts as an interferon-stimulated gene with a non-nuclear antiviral function: upon bandavirus infection it translocates to the cytoplasm and, via its CN domain, binds the viral nucleoprotein to block RNP assembly (PMID:40858603). CCND3 is recurrently dysregulated in cancer through a KCNMB4-CCND3 fusion in osteosarcoma (PMID:25300797) and through aberrant stabilization by upstream regulators such as PRAME (PMID:39071619).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 1995 High

    Established CCND3's canonical engine role — that it partners with CDK4 to phosphorylate Rb and that this activity is the target of glucocorticoid-mediated growth arrest, linking the cyclin directly to cell-cycle exit and apoptosis control.

    Evidence Stable overexpression, Rb-1 kinase activity assay, SV40 T antigen rescue, and serum-free apoptosis assay in lymphoid cells

    PMID:7664296

    Open questions at the time
    • Did not resolve CDK4/6-independent functions
    • Mechanism of glucocorticoid-driven transcriptional suppression of CCND3 not defined here
  2. 2015 Medium

    Identified direct miRNA control of CCND3 — multiple miRNAs target its transcript to enforce cell-cycle arrest and apoptosis, defining post-transcriptional brakes on cyclin abundance across tumor and immune contexts.

    Evidence Dual-luciferase reporter assays, miRNA mimic/inhibitor transfection, knockdown phenotyping, and in vivo models for miR-592 (colorectal), miR-15b (B cells/lupus), later extended to miR-212 (ATL) and miR-4779 (colon)

    PMID:26064240 PMID:26144250 PMID:27493231 PMID:29362401

    Open questions at the time
    • Relative contribution of each miRNA in physiological settings unclear
    • No integrated model of combinatorial miRNA regulation
  3. 2019 High

    Revealed translational control of CCND3, showing PTBP1 binds the 5'-UTR to enhance translation and is itself a miRNA target, layering a translational tier onto cyclin regulation.

    Evidence RBP co-IP, 5'-UTR reporter assay, and miR-194 target validation in hepatocellular carcinoma

    PMID:31301177

    Open questions at the time
    • Whether PTBP1 control of CCND3 operates outside HCC not established
    • Structural basis of 5'-UTR recognition undefined
  4. 2022 Medium

    Separated CCND3's pro-survival function from its kinase-complex role, showing it is essential for B-ALL survival independent of CDK4/6 activity and drives CDK4/6-inhibitor resistance.

    Evidence CCND3 knockdown vs. palbociclib comparison, FOXO1 perturbation, and gene expression analysis in B-ALL

    PMID:35013097

    Open questions at the time
    • Molecular basis of the CDK4/6-independent anti-apoptotic activity beyond CDK8 transcription unresolved
    • Single lineage (B-ALL) tested
  5. 2024 Medium

    Defined an upstream stabilization pathway in which PRAME elevates CCND3 by degrading negative regulators (CTMP, p21) to activate Akt signaling, connecting CCND3 accumulation to oncogenic proliferation in myeloma.

    Evidence PRAME knockdown/overexpression, co-IP, ubiquitination assays, and proliferation readouts in multiple myeloma cells

    PMID:39071619

    Open questions at the time
    • No in vitro reconstitution of the Cul2 ligase activity
    • Direct measurement of CCND3 stability changes not shown
  6. 2025 Medium

    Uncovered a CDK-independent cytoskeletal role: CCND3 facilitates PARK2-mediated vimentin ubiquitination, so its transcriptional loss via PI3K/Akt/c-Jun triggers EMT, metastasis, and cisplatin resistance.

    Evidence CCND3 knockdown, PARK2-vimentin ubiquitination assays, pathway inhibitors, migration/invasion assays, and clinical correlation in lung adenocarcinoma

    PMID:39781469

    Open questions at the time
    • How CCND3 facilitates PARK2 recruitment to vimentin mechanistically unknown
    • Whether this is direct or via intermediary not resolved
  7. 2025 High

    Demonstrated a non-nuclear antiviral function, establishing CCND3 as an interferon-stimulated gene that translocates to the cytoplasm and uses its CN domain to bind bandavirus nucleoprotein and block RNP assembly.

    Evidence ISG screening, subcellular fractionation/imaging, co-IP with domain mapping, RNA-independent binding assay, interface mapping, and in vivo infection model

    PMID:40858603

    Open questions at the time
    • Breadth of antiviral activity beyond bandaviruses unknown
    • Whether antiviral and cell-cycle functions are mutually exclusive states unclear
  8. 2026 Medium

    Added a ribosome-level translational control mechanism: METTL5-deposited 18S rRNA m6A enhances CCND3 translation efficiency, coupling rRNA modification to cyclin output and tumorigenesis.

    Evidence METTL5 knockout, RNC-seq for translation efficiency, western blot, and in vivo/in vitro assays in oral squamous cell carcinoma

    PMID:41743013

    Open questions at the time
    • Selectivity of METTL5 for CCND3 vs. global translation effects not isolated
    • Single tumor type tested
  9. 2025 Medium

    Detailed post-translational stabilization via p21, where CDKN1A binding occludes Thr283 phosphorylation to block CCND3 nuclear export and proteasomal degradation, extending its nuclear half-life.

    Evidence Reciprocal co-IP, phosphorylation site analysis, half-life assay, and AlphaFold2/molecular dynamics modeling in butyrate-treated intestinal cells (preprint)

    PMID:bio_10.1101_2025.06.19.660543

    Open questions at the time
    • Preprint, not yet peer-reviewed
    • Structural prediction of Thr283 burial awaits experimental validation
  10. 2025 Low

    Linked C-terminal truncating variants to oncogenic gain-of-function, inferring that loss of degradation signals increases CCND3 stability in pediatric cancers.

    Evidence COSMIC somatic mutation pattern analysis and pediatric genomics cohort interrogation (preprint)

    PMID:bio_10.1101_2025.11.20.25340490

    Open questions at the time
    • No direct biochemical reconstitution of protein stability
    • Inference from mutation pattern only; preprint

Open questions

Synthesis pass · forward-looking unresolved questions
  • How CCND3's distinct activities — Rb-directed kinase function, CDK4/6-independent survival signaling, cytoskeletal/EMT control, and cytoplasmic antiviral defense — are coordinated and switched within a single cell remains unresolved.
  • No unified model integrating nuclear and cytoplasmic functions
  • Structural basis of CDK4/6-independent functions undefined
  • Physiological triggers governing function-switching unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2 GO:0140110 transcription regulator activity 1
Localization
GO:0005634 nucleus 1 GO:0005829 cytosol 1
Pathway
R-HSA-1640170 Cell Cycle 2 R-HSA-168256 Immune System 2
Complex memberships
CCND3-CDK4/6 kinase complex

Evidence

Reading pass · 15 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1995 Cyclin D3 (CCND3) partners with CDK4 to phosphorylate the Rb-1 tumor suppressor protein; glucocorticoids inhibit both CcnD3 and Cdk4 expression, reducing Rb-1 phosphorylation; overexpression of cyclin D3 restores Rb-kinase activity in glucocorticoid-treated lymphoid cells; combined overexpression of cyclin D3 and c-Myc confers resistance to glucocorticoid-mediated G0 arrest and apoptosis. Stable transfection/overexpression, kinase activity assay (Rb-1 phosphorylation), SV40 T antigen rescue, serum-free apoptosis assay Cancer research High 7664296
2019 PTBP1 (polypyrimidine tract-binding protein 1) enhances CCND3 translation by directly interacting with the 5'-UTR of CCND3 mRNA, thereby facilitating cell cycle progression and tumor growth in hepatocellular carcinoma; miR-194 inhibits PTBP1 expression by binding its 3'-UTR, resulting in reduced CCND3 levels. RNA-binding protein co-immunoprecipitation, 5'-UTR reporter assay, miRNA target validation, western blot, loss-of-function/overexpression cell proliferation assays The Journal of pathology High 31301177
2022 FOXO1 acts as a transcriptional activator of CCND3 in B-ALL cells; CCND3 is essential for B-ALL proliferation and survival independent of CDK4/6 kinase activity; the anti-apoptotic effect of CCND3 is separable from its role in the CCND3-CDK4/6 kinase complex; CCND3 contributes to CDK8 transcription, partly explaining its anti-apoptotic function; increased CCND3 expression drives resistance to palbociclib (CDK4/6 inhibitor). CCND3 knockdown, CDK4/6 inhibition (palbociclib), transcription factor overexpression/knockdown, comparison of CCND3 depletion vs. kinase inhibition phenotypes, gene expression analysis Oncogenesis Medium 35013097
2025 CCND3 downregulation in cisplatin-resistant lung adenocarcinoma cells—driven by transcriptional suppression through the PI3K/Akt/c-Jun signaling axis—diminishes recruitment of the E3 ubiquitin ligase PARK2 (Parkin) to vimentin, thereby reducing vimentin ubiquitination and degradation, triggering epithelial-mesenchymal transition (EMT), cytoskeleton remodeling, metastasis, and chemoresistance. Loss-of-function (CCND3 knockdown), in vivo/in vitro migration/invasion assays, western blot for PARK2-vimentin ubiquitination, PI3K/Akt pathway inhibitor experiments, clinical sample correlation International journal of biological sciences Medium 39781469
2025 CCND3 functions as an interferon-stimulated gene (ISG) with antiviral activity against bandaviruses (e.g., SFTSV); upon viral infection, CCND3 undergoes cytoplasmic translocation; via its CN domain, CCND3 interacts with the viral nucleoprotein (NP) 'head' region in an RNA-independent manner, suppressing the ribonucleoprotein (RNP) replication machinery by blocking NP multimerization, NP-RNA binding, and NP association with viral polymerase; the viral nonstructural protein NSs counteracts CCND3 by attenuating its induction and promoting its autophagic degradation. ISG screening, subcellular fractionation/live imaging (cytoplasmic translocation), co-immunoprecipitation (CN domain–NP interaction), RNA-independent binding assay, in vivo infection model, structural/interaction interface mapping Nature communications High 40858603
2024 PRAME promotes CCND3 protein accumulation in multiple myeloma cells by ubiquitinating and degrading CTMP and p21 (as a Cul2-dependent E3 ligase substrate-recognizing subunit), which activates p-Akt signaling and leads to elevated CCND3 levels, thereby promoting cell proliferation. PRAME knockdown/overexpression, western blot for ubiquitination targets, co-immunoprecipitation (PRAME–CTMP/p21 interaction), cell proliferation assays Heliyon Medium 39071619
2015 TLR7 activation in B cells increases CCND3 expression via downregulation of miR-15b; CCND3 was identified as a direct target of miR-15b by luciferase reporter assay; this axis was confirmed in SLE patient B cells and in two lupus mouse models. TLR7 agonist stimulation, miRNA mimic/inhibitor transfection, dual-luciferase reporter assay, western blot, in vivo IMQ-treated mouse model Cellular & molecular immunology Medium 26144250
2015 CCND3 knockdown in colorectal cancer cells induced cell cycle arrest and apoptosis; miR-592 directly targets the CCND3 3'-UTR (confirmed by dual-luciferase reporter assay), reduces CCND3 protein, and consequently decreases phosphorylated Rb. siRNA knockdown, dual-luciferase reporter assay, western blot for p-Rb, cell proliferation/colony-forming assay International journal of clinical and experimental medicine Medium 26064240
2016 CCND3 was identified as a direct target of miR-212 in adult T-cell leukemia/lymphoma (ATL) cells; miR-212 restoration caused G0/G1 arrest and apoptosis; rescue with a miR-212-resistant CCND3 variant restored cell-cycle progression and attenuated apoptosis, confirming direct targeting. miRNA overexpression, dual-luciferase reporter assay, CCND3 rescue with miR-resistant construct, cell cycle analysis, apoptosis assay, in vivo xenograft Journal of investigative medicine Medium 27493231
2018 miR-4779 directly targets CCND3 (confirmed by luciferase reporter assay); CCND3 knockdown alone induced cell cycle arrest and apoptosis in colon cancer cells, phenocopying miR-4779 overexpression; miR-4779 suppressed tumor growth in HCT116 xenografts. miRNA mimic library screen, luciferase reporter assay, siRNA knockdown, cell cycle/apoptosis analysis, in vivo xenograft model Cell death & disease Medium 29362401
2014 A recurrent KCNMB4-CCND3 fusion gene in human osteosarcoma (identified by transcriptome sequencing and validated by RT-PCR, Sanger sequencing, and FISH) promotes SAOS-2 osteosarcoma cell migration. Transcriptome sequencing, RT-PCR, Sanger sequencing, FISH validation, cell migration/invasion assays with fusion gene expression Journal of hematology & oncology Medium 25300797
2033 BRD4 PROTAC degrader MZ1 downregulates CCND3 expression in B-ALL cells (identified by RNA-seq), leading to cell apoptosis, cell cycle arrest, and proliferation inhibition; these effects were confirmed by CCND3 knockdown experiments. RNA-seq (target identification), CCND3 knockdown (lentiviral), western blot, cell cycle/apoptosis flow cytometry, CCK8 proliferation assay Hematology (Amsterdam, Netherlands) Low 37594294
2026 METTL5-mediated N6-methyladenosine (m6A) modification of 18S rRNA enhances CCND3 mRNA translation efficiency; METTL5 knockout reduced CCND3 translational output (measured by ribosome nascent-chain complex-bound mRNA sequencing), suppressing OSCC tumorigenesis and metastasis. METTL5 knockout, RNC-seq (ribosome nascent-chain complex mRNA sequencing for translation efficiency), western blot, in vivo xenograft, Transwell/colony formation assays Oncology letters Medium 41743013
2025 Butyrate treatment causes CCND3 protein accumulation in intestinal cells through both mRNA increase and CDKN1A (p21)-dependent protein stabilization; CDKN1A reduces phosphorylation at the conserved Thr residue (Thr283) critical for CCND3 nuclear export and proteasomal degradation, thereby extending its nuclear half-life; co-immunoprecipitation identified CCND3 complexes with CDKN1A, CDK4, CDK6, and CDK5 in butyrate-treated cells; structural modeling predicts that CDKN1A binding buries CCND3-Thr283, limiting its phosphorylation. Co-immunoprecipitation (CCND3 complexes), phosphorylation site analysis, nuclear fractionation/half-life assay, structural modeling (AlphaFold2) + molecular dynamics simulations, western blot bioRxivpreprint Medium bio_10.1101_2025.06.19.660543
2025 NMDe (nonsense-mediated decay-escaping) frameshift/truncating variants in CCND3 that remove its C-terminal regulatory region increase intracellular protein stability (consistent with loss of phosphorylation-dependent degradation signals), representing an oncogenic gain-of-function mechanism in pediatric cancers. Somatic mutation database analysis (COSMIC), functional classification by variant pattern, pediatric clinical genomics cohort interrogation bioRxivpreprint Low bio_10.1101_2025.11.20.25340490

Source papers

Stage 0 corpus · 33 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 Amplification and expression of cyclin D genes (CCND1, CCND2 and CCND3) in human malignant gliomas. Brain pathology (Zurich, Switzerland) 142 10416984
2008 Translocations targeting CCND2, CCND3, and MYCN do occur in t(11;14)-negative mantle cell lymphomas. Blood 94 18391076
2018 CCND2 and CCND3 hijack immunoglobulin light-chain enhancers in cyclin D1- mantle cell lymphoma. Blood 76 30538135
1995 c-Myc and cyclin D3 (CcnD3) genes are independent targets for glucocorticoid inhibition of lymphoid cell proliferation. Cancer research 66 7664296
2017 Relevance of ID3-TCF3-CCND3 pathway mutations in pediatric aggressive B-cell lymphoma treated according to the non-Hodgkin Lymphoma Berlin-Frankfurt-Münster protocols. Haematologica 42 28209658
2018 MicroRNA miR-4779 suppresses tumor growth by inducing apoptosis and cell cycle arrest through direct targeting of PAK2 and CCND3. Cell death & disease 41 29362401
2019 A miR-194/PTBP1/CCND3 axis regulates tumor growth in human hepatocellular carcinoma. The Journal of pathology 40 31301177
2005 Identification of CCND3 and BYSL as candidate targets for the 6p21 amplification in diffuse large B-cell lymphoma. Clinical cancer research : an official journal of the American Association for Cancer Research 36 16322284
2014 Recurrent LRP1-SNRNP25 and KCNMB4-CCND3 fusion genes promote tumor cell motility in human osteosarcoma. Journal of hematology & oncology 29 25300797
2018 Recurrent CCND3 mutations in MLL-rearranged acute myeloid leukemia. Blood advances 27 30381403
2015 Activation of TLR7 increases CCND3 expression via the downregulation of miR-15b in B cells of systemic lupus erythematosus. Cellular & molecular immunology 27 26144250
2009 Polymorphic loci of E2F2, CCND1 and CCND3 are associated with HER2 status of breast tumors. International journal of cancer 25 19142864
2015 MiR-592 inhibited cell proliferation of human colorectal cancer cells by suppressing of CCND3 expression. International journal of clinical and experimental medicine 24 26064240
2005 Development of a human acute myeloid leukaemia screening panel and consequent identification of novel gene mutation in FLT3 and CCND3. British journal of haematology 24 15667533
2022 CCND3 is indispensable for the maintenance of B-cell acute lymphoblastic leukemia. Oncogenesis 16 35013097
2013 Fluorescence in situ hybridization analysis of CCND3 gene as marker of progression in bladder carcinoma. Journal of biological regulators and homeostatic agents 14 23830405
1992 Assignment of the human cyclin D3 gene (CCND3) to chromosome 6p----q13. Cytogenetics and cell genetics 14 1387066
2021 CircMYLK promotes the growth, migration, invasion, and survival of bladder cancer cells by upregulating CCND3 level via competitively binding to miR-34a. Drug development research 11 34056735
2016 Restoration of microRNA-212 causes a G0/G1 cell cycle arrest and apoptosis in adult T-cell leukemia/lymphoma cells by repressing CCND3 expression. Journal of investigative medicine : the official publication of the American Federation for Clinical Research 9 27493231
2025 Downregulated CCND3 Is a Key Event Driving Lung Adenocarcinoma Metastasis during Acquired Cisplatin Resistance. International journal of biological sciences 5 39781469
2024 Analysis of CCND3 mutations in diffuse large B-cell lymphoma. Annals of hematology 5 38886191
2023 BRD4 PROTAC degrader MZ1 exhibits anti-B-cell acute lymphoblastic leukemia effects via targeting CCND3. Hematology (Amsterdam, Netherlands) 5 37594294
2022 A rapidly growing cutaneous malignant glomus tumor with a CCND3 mutation. Journal of cutaneous pathology 5 36059094
2008 cDNA cloning, sequence identification and tissue expression distribution of three novel porcine genes: UCHL3, RIT1 and CCND3. Molecular biology reports 5 18202904
2025 Interferon-stimulated gene screening identifies CCND3 as a host restriction factor against emerging high-pathogenic bandaviruses. Nature communications 3 40858603
2024 LncRNA Pvt1 aggravates cardiomyocyte apoptosis via the microRNA-216/Ccnd3 axis. Heliyon 3 39398060
2024 PRAME promotes proliferation of multiple myeloma cells through CTMP/Akt/p21/CCND3 axis by ubiquitinating CTMP and p21. Heliyon 2 39071619
2025 Cold atmospheric plasma restores fulvestrant sensitivity by inhibiting CCND3 in the drug-resistant breast cancer cells. Scientific reports 1 41136551
2023 Incidental Detection of TFEB-Amplified Renal Cell Carcinoma by Colocated Gene Amplification of CCND3 (6p21): A Case Report and Review of the Literature. International journal of surgical pathology 1 37394760
2026 METTL5-mediated m6A modification of 18S rRNA drives oral squamous cell carcinoma progression by enhancing CCND3 translation. Oncology letters 0 41743013
2026 CCND3 Suppression Ameliorates β-Thalassaemia in a Murine Disease Model: A Potential Therapeutic Strategy. Cells 0 41892286
2025 Pentadecanoic Acid (C15:0) at Naturally Occurring Circulating Concentrations Has Selective Anticancer Activities Including Targeting B-Cell Lymphomas with CCND3 Oncogenic Alterations. Nutrients 0 41097159
2023 Case report: Identification of atypical mantle cell lymphoma with CCND3 rearrangement by next-generation sequencing. Frontiers in oncology 0 37064110

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