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ZBTB46

Zinc finger and BTB domain-containing protein 46 · UniProt Q86UZ6

Length
589 aa
Mass
64.1 kDa
Annotated
2026-06-11
24 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ZBTB46 is a BTB-zinc finger transcription factor that enforces classical dendritic cell (cDC) identity and lineage commitment, marking cDCs and committed pre-cDCs but not pDCs, monocytes, or macrophages (PMID:22615127, PMID:22615130). It restricts cDC responsiveness to non-DC growth factors by silencing G-CSF and LIF receptors, and its enforced expression in bone marrow progenitors suppresses granulocyte/myeloid potential while promoting cDC development (PMID:22615127). Mechanistically, ZBTB46 binds a 5'-TGACGT-3' motif in the promoters of costimulatory genes (cd80/86, cd40) and maintains them in a repressed, heterochromatic state (H3K4me0/H3K9me3/H3K27me3) by recruiting NuRD and Hdac3/NCoR corepressor complexes; upon TLR9 signaling, Cullin1/Fbxw11-mediated ubiquitination degrades ZBTB46, releasing these promoters for activation and enabling DC maturation (PMID:35675955). During development, progenitors transit a Zbtb46+Ly6D+ intermediate before acquiring cDC phenotype, a step arrested by type I IFN to favor pDC output (PMID:35705536). Beyond cDCs, ZBTB46 marks an IL-22-producing ILC3 subset imprinted by RORγt that restrains intestinal inflammation (PMID:35831503), and controls tumor vasculature and myeloid skewing in bone marrow progenitors by suppressing Cebpb, with enforced expression normalizing tumor vessels and synergizing with anti-PD1 therapy (PMID:39134750). In prostate cancer, ZBTB46 acts as a context-dependent transcriptional regulator induced by androgen deprivation, directly binding and activating LIF, PTGS1, and PCK1 regulatory regions and inducing SNAI1 to drive EMT, LIF-STAT3 signaling, and neuroendocrine differentiation (PMID:28692046, PMID:30312731, PMID:30962287, PMID:34815524).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 2012 High

    Established that ZBTB46 is a specific marker and master determinant of classical DC identity, resolving how the cDC lineage is distinguished from related myeloid and pDC lineages.

    Evidence GFP/DTR knockin mice, progenitor overexpression, loss-of-function analysis, and in vivo cDC depletion

    PMID:22615127 PMID:22615130

    Open questions at the time
    • Direct transcriptional targets and DNA-binding motif not yet defined
    • Molecular basis for restricting growth-factor receptor expression unresolved
  2. 2017 Medium

    Showed ZBTB46 operates outside immunity as an AR/miR-1-regulated driver of EMT in prostate cancer through transcriptional control of SNAI1.

    Evidence miRNA and ZBTB46 gain/loss-of-function, reporter assays, migration/invasion and in vivo tumor models

    PMID:28692046

    Open questions at the time
    • Direct vs indirect regulation of SNAI1 not fully resolved by ChIP
    • Single-lab finding
  3. 2018 Medium

    Identified ZBTB46 as a transcriptional coactivator directly binding the PTGS1 promoter within an AR-SPDEF axis, expanding its role in neuroendocrine prostate differentiation.

    Evidence ChIP, overexpression/knockdown, luciferase reporter, tumor models, PTGS1 inhibitor sensitivity

    PMID:30312731

    Open questions at the time
    • Coactivator partners not identified
    • Single lab
  4. 2019 Medium

    Demonstrated ZBTB46 directly activates LIF to engage LIF-STAT3 signaling, linking it to neuroendocrine differentiation and high-grade prostate tumors.

    Evidence ChIP at LIF regulatory sequence, gain/loss-of-function, STAT3 signaling assays, patient IHC and serum LIF

    PMID:30962287

    Open questions at the time
    • Mechanistic switch from repressor to activator context unclear
    • Single lab
  5. 2020 Medium

    Placed ZBTB46 downstream of an apoptotic-body/STAT5 signaling pathway that tunes DC immune-activating potential.

    Evidence In vitro irradiation, apoptotic body depletion with annexin beads, DC differentiation and cytokine readouts

    PMID:32396024

    Open questions at the time
    • Direct STAT5 binding to Zbtb46 locus not shown
    • Single study
  6. 2021 Medium

    Defined ZBTB46's lineage-restricting activity in progenitors, suppressing myeloid/mesoderm programs while favoring erythroid/endothelial output, and identified a PCK1 positive feedback loop in cancer.

    Evidence Inducible ESC overexpression with colony/flow assays; RNA-seq and ChIP for PCK1 regulation in CRPC models

    PMID:34058047 PMID:34815524

    Open questions at the time
    • Mechanism of erythroid/endothelial promotion undefined
    • PCK1 feedback loop validated in single lab
  7. 2022 High

    Provided the molecular mechanism of ZBTB46-mediated repression: motif-specific promoter binding and recruitment of NuRD and Hdac3/NCoR corepressors, with TLR9-induced Cullin1/Fbxw11 degradation switching DCs to a mature state.

    Evidence ChIP-qPCR, mass spectrometry, zebrafish CRISPR KO, co-IP, flow cytometry and T cell assays

    PMID:35675955

    Open questions at the time
    • Demonstrated in zebrafish; mammalian conservation of corepressor recruitment not directly shown
    • Degron sequence in ZBTB46 not mapped
  8. 2022 High

    Expanded ZBTB46 function to ILC3 biology and resolved its developmental trajectory, showing it marks an IL-22-producing ILC3 subset and a Ly6D+ cDC intermediate gated by type I IFN.

    Evidence scRNA-seq, conditional depletion, RORγt-dependent imprinting, infection models, cell-fate tracking

    PMID:35705536 PMID:35831503

    Open questions at the time
    • Transcriptional targets in ILC3s not defined
    • How IFN arrests the intermediate stage mechanistically unclear
  9. 2024 High

    Connected ZBTB46 to tumor angiogenesis and anti-tumor immunity through Cebpb suppression in progenitors and vascular normalization in endothelium, identifying therapeutic synergy with anti-PD1.

    Evidence Cell-type-specific knockout/overexpression, tumor models, Cebpb epistasis, vascular normalization, anti-PD1 combination

    PMID:39134750

    Open questions at the time
    • Direct Cebpb promoter regulation by ZBTB46 not shown
    • Endothelial transcriptional targets undefined
  10. 2025 High

    Linked Zbtb46+ adipose-tissue DCs to systemic metabolism via the DPP4/GLP-1 axis, broadening ZBTB46-marked cells to glucose homeostasis.

    Evidence Zbtb46-DTR chimeras, DC-specific Dpp4 knockout, GLP-1/DPP4 and glucose/insulin assays

    PMID:41139017

    Open questions at the time
    • Role of ZBTB46 transcription factor activity itself (vs cell depletion) not separated
    • DPP4 regulation by ZBTB46 not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the same factor switches between a corepressor (costimulatory silencing) and a coactivator (LIF/PTGS1/PCK1) depending on cell context remains unresolved.
  • No structural model of ZBTB46 DNA/cofactor complexes
  • Context-specific cofactor switching mechanism unknown
  • Human in vivo validation of the corepressor mechanism lacking

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140110 transcription regulator activity 6 GO:0003677 DNA binding 4
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-168256 Immune System 5 R-HSA-74160 Gene expression (Transcription) 5 R-HSA-1266738 Developmental Biology 3

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2012 Zbtb46 is selectively expressed by classical DCs (cDCs) and committed cDC progenitors (pre-cDCs) but not by plasmacytoid DCs, monocytes, macrophages, or other immune lineages. Overexpression of Zbtb46 in bone marrow progenitors inhibited granulocyte potential and promoted cDC development. Zbtb46-deficient cDCs maintained expression of G-CSF and LIF receptors that are normally downregulated in cDCs, indicating Zbtb46 enforces cDC identity by restricting responsiveness to non-DC growth factors. Homologous recombination (GFP knockin), bone marrow progenitor overexpression, Zbtb46-deficient mouse analysis, flow cytometry, developmental potential assays The Journal of experimental medicine High 22615127
2012 zDC (Zbtb46/Btbd4) is specifically expressed by cDCs and committed cDC precursors but not monocytes, pDCs, or other immune cells. A DTR knockin at the zDC locus allows selective depletion of cDCs upon diphtheria toxin injection, sparing pDCs, monocytes, macrophages, and NK cells. DTR cDNA knockin into zDC locus, diphtheria toxin depletion, flow cytometry, bone marrow chimeras, immune challenge models (T. gondii, melanoma) The Journal of experimental medicine High 22615130
2017 ZBTB46 is negatively regulated by androgen receptor (AR) signaling via miR-1-mediated downregulation in prostate cancer cells. ZBTB46 transcriptionally regulates SNAI1, a key EMT driver, thereby promoting epithelial-to-mesenchymal transition and metastasis after androgen deprivation. miRNA overexpression/knockdown, ZBTB46 overexpression/knockdown, transcriptional reporter assays, cell migration/invasion assays, in vivo tumor models Oncogene Medium 28692046
2018 ZBTB46 acts as a transcriptional coactivator that binds to the promoter of PTGS1 (prostaglandin-endoperoxide synthase 1) and transcriptionally upregulates PTGS1 levels. ZBTB46 is regulated upstream by the androgen-responsive gene SPDEF, placing it in the AR-SPDEF-ZBTB46-PTGS1 axis during neuroendocrine prostate cancer differentiation. ChIP assay (ZBTB46 binding to PTGS1 promoter), ZBTB46 overexpression/knockdown, luciferase reporter, in vitro and in vivo tumor models, PTGS1 inhibitor sensitivity assays Cancer letters Medium 30312731
2019 ZBTB46 transcriptionally activates LIF expression in prostate cancer cells by physically interacting with the regulatory sequence of the LIF gene. High ZBTB46 output activates LIF-STAT3 signaling, promoting neuroendocrine differentiation. ZBTB46 is induced by androgen deprivation therapy and is upregulated in high-grade prostate tumors. ChIP assay (ZBTB46 binding to LIF regulatory sequence), ZBTB46 overexpression/knockdown, LIF-STAT3 signaling assays, IHC on patient samples, serum LIF measurement Clinical cancer research Medium 30962287
2022 ZBTB46 restrains the inflammatory properties of ILC3s in the intestine, including OX40L-dependent expansion of Th17 cells. ZBTB46 expression in CCR6+ ILC3s is imprinted by RORγt, fine-tuned by microbiota-derived signals, and increased by pro-inflammatory cytokines. ZBTB46+ ILC3s are a major source of IL-22, and their selective depletion renders mice susceptible to enteric infection. Single-cell transcriptomics, conditional cell depletion (DTR-based), genetic loss-of-function, T cell co-culture assays, intestinal infection models (enteric infection), IL-22 measurement Nature High 35831503
2022 In zebrafish, Zbtb46 binds to a 5'-TGACGT-3' motif in the promoters of cd80/86 and cd40 genes in resting dendritic cells, where it establishes a repressive histone modification pattern (H3K4me0/H3K9me3/H3K27me3) by organizing NuRD (Mdb3/NuRD) and Hdac3/NCoR corepressor complexes through recruitment of Hdac1/2 and Hdac3. Upon TLR9 signaling, E3 ubiquitin ligase Cullin1/Fbxw11 mediates Zbtb46 degradation, releasing promoters for epigenetic reprogramming to an activated state (H3K4me3/H3K9ac/H3K27ac) and enabling CD80/86 and CD40 expression. ChIP-qPCR, mass spectrometry, Zbtb46 knockout zebrafish (CRISPR), co-immunoprecipitation, flow cytometry, T cell activation assays, TLR9 pathway analysis Journal of immunology High 35675955
2022 During DC development from bone marrow precursors, cDC-primed cells within Ly6DhiZbtb46- precursors rapidly upregulate Zbtb46 and pass through a Zbtb46+Ly6D+ intermediate stage before acquiring cDC phenotype after cell division. Type I IFN arrests cDC-primed cells at the Zbtb46+Ly6D+ stage, limiting cDC output and promoting pDC output. Single-cell transcriptomics, high-dimensional flow cytometry, cell fate analysis (in vitro and in vivo), cytokine stimulation experiments Nature communications High 35705536
2024 ZBTB46 controls tumor angiogenesis and anti-tumor immunity. In endothelial cells, Zbtb46 deficiency leads to a highly angiogenic phenotype (dysfunctional vasculature). In bone marrow progenitors, Zbtb46 deficiency upregulates Cebpb, diverting DC differentiation toward immunosuppressive myeloid lineage output. Enforced Zbtb46 expression normalizes tumor vessels and, by suppressing Cebpb, skews progenitors toward immunostimulatory myeloid output. Zbtb46 mRNA treatment synergized with anti-PD1 immunotherapy. Endothelial cell-specific and bone marrow-specific Zbtb46 knockout/overexpression, in vivo tumor models, transcriptomic analysis, Cebpb epistasis analysis, vascular normalization assays, anti-PD1 combination therapy Nature immunology High 39134750
2020 Radiation-induced apoptotic bodies activate STAT5/Zbtb46 signaling in bone marrow progenitors, increasing Zbtb46 expression and enhancing subsequent DC immune-activating potential. Depletion of apoptotic bodies using annexin beads reversed these effects, confirming the apoptotic body → STAT5 → Zbtb46 pathway. In vitro irradiation of bone marrow progenitors, DC differentiation, apoptotic body depletion (annexin beads), flow cytometry, ELISA, adaptive dose experiments in vivo International journal of radiation biology Medium 32396024
2021 PCK1 (phosphoenolpyruvate carboxykinase 1) is regulated by the ZBTB46 transcription factor upon activation of LIF signaling. ChIP analysis confirmed ZBTB46 binding at PCK1 regulatory regions. Upregulation of PCK1 reciprocally increases ZBTB46 levels, forming a positive feedback loop that promotes neuroendocrine differentiation in CRPC. RNA-seq, ChIP analysis (ZBTB46 binding to PCK1), in vitro cell lines, in vivo animal models, PCK1 inhibitor treatment British journal of cancer Medium 34815524
2021 Forced expression of Zbtb46 in ESC-derived progenitors suppresses myeloid development (reduced CD11b+ cells, lower Irf8 and myeloid gene expression), interferes with mesoderm formation, and inhibits cell proliferation, while promoting erythroid colony formation and increasing adult hemoglobin (Hbb-b1) expression and CD105+ endothelial-like cell formation. Chemically inducible Zbtb46 overexpression in mouse ESC lines, flow cytometry, gene expression profiling, colony assays Stem cells Medium 34058047
2025 Depletion of myeloid-derived Zbtb46+ cells (adipose tissue DCs) in obese mice improves glucose homeostasis via the DPP4/GLP-1 pathway. Adipose tissue DCs are a key contributor to circulating DPP4 activity; their depletion reduces DPP4 activity, elevates GLP-1 levels, enhances insulin secretion, and decreases food intake. DC-specific Dpp4 knockout confirmed that ATDC-derived DPP4 regulates GLP-1-induced insulin secretion. Zbtb46-DTR chimeric mice (bone marrow transplant), diphtheria toxin depletion, DC-specific Dpp4 knockout (Cre-loxP), GLP-1/DPP4 activity assays, glucose tolerance testing, insulin assays Journal of advanced research High 41139017

Source papers

Stage 0 corpus · 24 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Zbtb46 expression distinguishes classical dendritic cells and their committed progenitors from other immune lineages. The Journal of experimental medicine 522 22615127
2012 Expression of the zinc finger transcription factor zDC (Zbtb46, Btbd4) defines the classical dendritic cell lineage. The Journal of experimental medicine 423 22615130
2022 ZBTB46 defines and regulates ILC3s that protect the intestine. Nature 51 35831503
2019 Leukemia Inhibitory Factor Promotes Castration-resistant Prostate Cancer and Neuroendocrine Differentiation by Activated ZBTB46. Clinical cancer research : an official journal of the American Association for Cancer Research 43 30962287
2017 Inhibition of the androgen receptor induces a novel tumor promoter, ZBTB46, for prostate cancer metastasis. Oncogene 34 28692046
2022 Ly6D+Siglec-H+ precursors contribute to conventional dendritic cells via a Zbtb46+Ly6D+ intermediary stage. Nature communications 28 35705536
2024 ZBTB46 coordinates angiogenesis and immunity to control tumor outcome. Nature immunology 23 39134750
2018 Androgen deprivation-induced ZBTB46-PTGS1 signaling promotes neuroendocrine differentiation of prostate cancer. Cancer letters 23 30312731
2017 COX-2 inhibitor prevents tumor induced down regulation of classical DC lineage specific transcription factor Zbtb46 resulting in immunocompetent DC and decreased tumor burden. Immunology letters 18 28161224
2019 ZBTB46, SPDEF, and ETV6: Novel Potential Biomarkers and Therapeutic Targets in Castration-Resistant Prostate Cancer. International journal of molecular sciences 15 31181727
2021 Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma. Brain : a journal of neurology 12 33723576
2018 Expression of the transcription factor ZBTB46 distinguishes human histiocytic disorders of classical dendritic cell origin. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 12 29743654
2016 Characterisation of ZBTB46 and DC-SCRIPT/ZNF366 in rainbow trout, transcription factors potentially involved in dendritic cell maturation and activation in fish. Developmental and comparative immunology 12 27889532
2022 Zbtb46 Controls Dendritic Cell Activation by Reprogramming Epigenetic Regulation of cd80/86 and cd40 Costimulatory Signals in a Zebrafish Model. Journal of immunology (Baltimore, Md. : 1950) 11 35675955
2023 Circular RNA ZBTB46 depletion alleviates the progression of Atherosclerosis by regulating the ubiquitination and degradation of hnRNPA2B1 via the AKT/mTOR pathway. Immunity & ageing : I & A 10 37990246
2021 PCK1 regulates neuroendocrine differentiation in a positive feedback loop of LIF/ZBTB46 signalling in castration-resistant prostate cancer. British journal of cancer 10 34815524
2017 Long-Term Depletion of Conventional Dendritic Cells Cannot Be Maintained in an Atherosclerotic Zbtb46-DTR Mouse Model. PloS one 10 28060909
2024 Comparative transcriptomic analysis of Illumina and MGI next-generation sequencing platforms using RUNX3- and ZBTB46-instructed embryonic stem cells. Frontiers in genetics 7 38250572
2020 Radiation-induced augmentation in dendritic cell function is mediated by apoptotic bodies/STAT5/Zbtb46 signaling. International journal of radiation biology 3 32396024
2021 Zbtb46-dependent altered developmental program in embryonic stem cell-derived blood cell progenitors. Stem cells (Dayton, Ohio) 2 34058047
2026 Circular RNA ZBTB46 Attenuates Apoptosis and Oxidative Stress in Lipopolysaccharide-Injured Human Endothelial Cells by Modulating ERBB2-AKT Signaling. Journal of visualized experiments : JoVE 0 41770666
2026 Long non-coding RNA ZBTB46-AS1 promotes ovarian cancer progression through regulation of p53 activity by TAF6 protein. American journal of translational research 0 41868912
2025 Depletion of myeloid-derived Zbtb46+ cells improves glycemic control in obesity via the DPP4/GLP-1 pathway. Journal of advanced research 0 41139017
2022 ZBTB46 in ILC3: shared transcriptional infrastructure defines gut-protective capabilities. Trends in immunology 0 35953346

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