Affinage

BLVRB

Flavin reductase (NADPH) · UniProt P30043

Round 2 corrected
Length
206 aa
Mass
22.1 kDa
Annotated
2026-04-28
49 papers in source corpus 10 papers cited in narrative 10 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

BLVRB is an NADPH-dependent monomeric oxidoreductase of the short-chain dehydrogenase/reductase (SDR) superfamily that catalyzes the reduction of biliverdin IXβ, IXγ, and IXδ tetrapyrroles as well as flavins via direct hydride transfer within an α/β dinucleotide binding fold active site (PMID:11224564, PMID:7929092). It physically interacts with heme oxygenase-1 to accept biliverdin product through a shared binding interface (PMID:12626517), and in red blood cells functions as an oxygen-sensitive Band 3 interactor whose Cys109 relays nitric oxide to GAPDH, coupling redox status to glycolytic regulation (PMID:41394639). Loss of BLVRB reductase activity—whether by the S111L mutation in humans or gene knockout in mice—causes reactive oxygen species accumulation that drives megakaryocyte-biased hematopoietic lineage commitment, enhanced thrombopoiesis, and defective stress erythropoiesis, establishing a non-redundant cytoprotective role in redox-regulated lineage partitioning (PMID:27207795, PMID:33359909). BLVRB also promotes NF-κB p65 phosphorylation and nuclear translocation, supporting hepatocellular carcinoma cell proliferation (PMID:26708147).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 1994 High

    Purification and kinetic characterization of BLVRB from human liver established it as a ~21 kDa NADPH-preferring monomeric reductase with strict specificity for non-IXα biliverdin isomers, defining its enzymatic identity as distinct from BVRA.

    Evidence Protein purification to homogeneity from human liver cytosol with Km determination and substrate specificity assays

    PMID:7929092

    Open questions at the time
    • Structural basis for IXα exclusion was unknown
    • Physiological significance of biliverdin IXβ reduction in vivo was unclear
    • No information on non-biliverdin substrates such as flavins
  2. 1995 High

    Chromosomal mapping of BLVRB to 19q13.13–q13.2 anchored the gene locus for future genetic studies.

    Evidence FISH using a 0.76-kb cDNA probe on human chromosomes

    PMID:7656592

    Open questions at the time
    • No functional or disease-associated variants had been identified at this locus
  3. 2001 High

    The 1.15 Å crystal structure of BLVRB with NADP+ and multiple ternary substrate complexes revealed the structural basis of catalysis—direct B-face hydride transfer from NADPH to the substrate positioned above the nicotinamide C4—and explained selectivity against biliverdin IXα through steric constraints at side-chain binding pockets.

    Evidence X-ray crystallography at 1.15 Å resolution with ternary complexes (mesobiliverdin IVα, biliverdin IXα, FMN, lumichrome)

    PMID:11224564

    Open questions at the time
    • No protein–protein interaction partners had been characterized
    • Cellular or in vivo function of the enzyme was unknown
  4. 2003 High

    FRET and mutagenesis demonstrated that BLVRB physically binds heme oxygenase-1 with high affinity (Kd ~0.2 µM), competing with cytochrome P450 reductase for an overlapping surface, establishing a direct biliverdin channeling mechanism from HO-1 to BLVRB.

    Evidence FRET binding assays and site-directed mutagenesis of hHO-1 surface lysine/arginine residues

    PMID:12626517

    Open questions at the time
    • Functional consequence of disrupting HO-1–BLVRB interaction in cells was not tested
    • Whether biliverdin channeling is kinetically significant in vivo was unresolved
  5. 2016 High

    Identification of the human loss-of-function variant S111L linked BLVRB reductase activity to a physiological redox pathway: defective biliverdin/flavin reduction causes ROS accumulation that biases hematopoietic progenitors toward megakaryocyte commitment and enhanced thrombopoiesis, while separately, knockdown/overexpression studies placed BLVRB upstream of NF-κB p65 phosphorylation in hepatocellular carcinoma cell growth.

    Evidence Platelet transcriptome sequencing and thrombocytosis cohort analysis with S111L functional characterization (Blood); siRNA knockdown, overexpression, and p65 phosphorylation assays in HCC cells (Cancer Science)

    PMID:26708147 PMID:27207795

    Open questions at the time
    • In vivo genetic validation in animal models was lacking for the hematopoietic phenotype
    • Mechanism linking BLVRB enzymatic activity to NF-κB p65 phosphorylation was not delineated
    • Whether the NF-κB effect depends on biliverdin reductase or flavin reductase activity was unclear
  6. 2020 High

    Blvrb-knockout mice validated the non-redundant in vivo role: while steady-state hematopoiesis is normal, stress conditions reveal defective erythropoiesis with lipid peroxidation and a cell-autonomous megakaryocyte lineage bias, confirming BLVRB as a cytoprotective redox regulator of lineage partitioning under hematopoietic stress.

    Evidence Blvrb knockout mouse, stress hematopoiesis assays, lipid peroxidation measurement, multipotential progenitor colony assays

    PMID:33359909

    Open questions at the time
    • Specific lipid substrates of peroxidation and downstream effectors of lineage bias were not identified
    • Whether pharmacological BLVRB inhibition recapitulates the megakaryocyte bias was untested
  7. 2025 High

    Selective small-molecule BLVRB inhibitors that stack within the active site against the nicotinamide ring recapitulated the megakaryocyte lineage bias in vitro and accelerated platelet recovery in mouse stress thrombopoiesis models, providing pharmacological proof-of-concept for therapeutic BLVRB targeting; concurrently, cross-linking interactomics in RBCs identified BLVRB as an oxygen-sensitive Band 3 interactor whose Cys109 trans-nitrosates GAPDH to regulate glycolysis.

    Evidence NMR and co-crystal structures with inhibitors plus in vivo oral dosing in mice (Nature Communications); deep cross-linking proteomics of ultra-pure RBCs, S-nitrosation assays, humanized mouse truncation model (preprint)

    PMID:40216753 PMID:41394639

    Open questions at the time
    • Band 3–BLVRB interaction and GAPDH trans-nitrosation findings are from a preprint and await peer review
    • Whether BLVRB inhibitors affect RBC glycolytic regulation is unexplored
    • Long-term safety of oral BLVRB inhibition on erythropoiesis has not been assessed

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular mechanism linking BLVRB enzymatic product (reduced biliverdin/flavin) or ROS accumulation to specific signaling effectors that dictate megakaryocyte versus erythroid fate remains undefined, as does the relationship between the NF-κB signaling role and the hematopoietic lineage function.
  • No direct signaling effector downstream of BLVRB-generated ROS has been identified in lineage commitment
  • Whether the NF-κB and hematopoietic lineage functions share a common redox mechanism is unknown
  • Structural basis for Band 3–BLVRB interaction has not been resolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016491 oxidoreductase activity 4
Localization
GO:0005829 cytosol 1 GO:0005886 plasma membrane 1
Pathway
R-HSA-1430728 Metabolism 4 R-HSA-1266738 Developmental Biology 2
Partners

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2001 Crystal structure of human BLVRB (biliverdin IXβ reductase) in complex with NADP+ resolved at 1.15 Å revealed it is a monomer with an α/β dinucleotide binding fold. Ternary complex structures with mesobiliverdin IVα, biliverdin IXα, FMN, and lumichrome showed a single substrate binding site where substrates bind primarily through hydrophobic interactions, with the reducible atom of both biliverdin and flavin positioned above the reactive C4 of the cofactor for direct hydride transfer. Discrimination against biliverdin IXα isomer is explained by steric hindrance at bilatriene side chain binding pockets, and NADP(H) preference and B-face stereospecificity are structurally rationalized. X-ray crystallography (1.15 Å resolution), ternary complex structures with multiple substrates/inhibitors Nature structural biology High 11224564
1994 Human BLVRB (biliverdin IXβ reductase, isozymes I and II) was purified to homogeneity from human liver cytosol as a ~21 kDa monomer. It is strictly specific for biliverdin substrates (biliverdin IXβ, IXγ, IXδ but not IXα), uses NADPH preferentially over NADH (Km for NADPH ~35.9/13.1 µM vs. NADH ~5.6/8.2 mM), exhibits substrate inhibition above 3–4 µM biliverdin, and shows optimum pH of 8.2. Activity is proportionally higher in fetal than adult liver. Protein purification to homogeneity, enzyme kinetics (Km determination), substrate specificity assays The Journal of biological chemistry High 7929092
2016 A single loss-of-function mutation BLVRB(S111L), located within the substrate/cofactor [α/β dinucleotide NAD(P)H] binding fold, renders BLVRB a functionally defective redox coupler for flavin and biliverdin IXβ tetrapyrroles. This results in exaggerated reactive oxygen species accumulation, which acts as a metabolic signal leading to differential hematopoietic lineage commitment and enhanced thrombopoiesis. This defined the first physiologically relevant function of BLVRB in a redox-regulated bioenergetic pathway governing terminal megakaryocytopoiesis. Platelet transcriptome sequencing, thrombocytosis cohort analysis, functional redox assays with mutant BLVRB(S111L) Blood High 27207795
2015 BLVRB is classified as a member of the short-chain dehydrogenase/reductase (SDR) superfamily, sharing the hallmark α/β dinucleotide binding fold and displaying distinct structural and functional properties compared to its paralog BVRA. Both BVR isozymes function as cell surface membrane receptors with pleiotropic functions including biliverdin reduction, kinase activity, though BVRA but not BLVRB can act as a transcription factor. Comparative structural and functional analysis, SDR family classification Trends in endocrinology and metabolism: TEM Medium 25726384
2003 Biliverdin reductase (BVR-B, BLVRB) binds to human heme oxygenase-1 (hHO-1) with Kd = 0.2 ± 0.1 µM. FRET and site-directed mutagenesis showed that BLVRB and cytochrome P450 reductase compete for an overlapping binding site on hHO-1 involving residues Lys18, Lys22, Lys179, Arg183, and Arg185, facilitating biliverdin transfer from hHO-1 to BLVRB. Fluorescence resonance energy transfer (FRET), site-directed mutagenesis of hHO-1 surface residues, binding affinity measurement The Journal of biological chemistry High 12626517
2020 Blvrb-deficient mice exhibit normal steady-state hematopoiesis but show defective stress erythropoiesis (in spleen and bone marrow) with defective lipid peroxidation as a marker of oxidant mishandling, and a dichotomous megakaryocyte-biased hematopoietic recovery under stress conditions. Cell-autonomous effects on megakaryocyte lineage bias were demonstrated using multipotential progenitor assays, establishing a non-redundant cytoprotective role of Blvrb in stress hematopoiesis via a redox-regulated mechanism of lineage partitioning. Blvrb knockout mouse model, stress hematopoiesis assays, lipid peroxidation measurement, multipotential progenitor colony assays, single-cell transcriptomic computational modeling Free radical biology & medicine High 33359909
2016 miR-127-5p directly targets the 3'-UTR of BLVRB, suppressing its expression. RNAi-mediated knockdown of BLVRB inhibited NF-κB p65 phosphorylation and nuclear translocation, suppressing downstream NF-κB target gene expression and hepatocellular carcinoma cell growth, while BLVRB overexpression promoted growth and NF-κB activation. This positions BLVRB upstream of NF-κB p65 phosphorylation in a cancer cell growth pathway. 3'-UTR luciferase reporter assay (miRNA targeting), siRNA knockdown, overexpression, p65 phosphorylation and nuclear translocation assays, colony formation assay Cancer science Medium 26708147
2025 NMR spectroscopy and co-crystallization studies with novel small molecule BLVRB inhibitors confirmed binding within the BLVRB active site, with ring stacking between the inhibitor and the nicotinamide moiety of the NADP+ cofactor. A diazabicyclo derivative selectively inhibited BLVRB, promoted megakaryocyte speciation in biphenotypic erythro/megakaryocyte cellular models, synergized with TPO-dependent megakaryocyte formation in hematopoietic stem cells, and upon oral delivery in mice expanded platelet recovery in stress thrombopoietic models. NMR spectroscopy, X-ray co-crystallization, in vitro enzyme inhibition assays, hematopoietic stem cell differentiation assays, in vivo oral dosing in mouse stress thrombopoiesis model Nature communications High 40216753
2025 Cross-linking interactomics of ultra-pure red blood cells identified BLVRB as a Band 3 (SLC4A1) interactor that binds the N-terminal cytosolic domain under normoxia and dissociates under hypoxia (when band 3–deoxyhemoglobin interactions increase threefold). Mechanistically, BLVRB Cys109 acts as a nitric oxide relay, trans-nitrosating GAPDH at active site Cys152, transiently inhibiting glycolysis. In humanized mice, Band 3 N-terminus truncation disrupted glycolytic activation and impaired exercise tolerance, establishing physiological relevance of the Band 3–BLVRB module. Deep proteomics of ultra-pure RBCs, cross-linking mass spectrometry interactomics, S-nitrosation assays, humanized mouse truncation model, exercise tolerance testing bioRxivpreprint Medium 41394639
1995 The human BLVRB gene was localized to chromosome region 19q13.13→q13.2 by fluorescence in situ hybridization (FISH) using a 0.76-kb cDNA fragment as a probe, following its isolation from a human liver cDNA library. Fluorescence in situ hybridization (FISH) Cytogenetics and cell genetics High 7656592

Source papers

Stage 0 corpus · 49 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2003 Heme oxygenase-1: unleashing the protective properties of heme. Trends in immunology 1014 12909459
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2012 A census of human soluble protein complexes. Cell 689 22939629
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2008 Large-scale proteomics and phosphoproteomics of urinary exosomes. Journal of the American Society of Nephrology : JASN 607 19056867
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2015 Panorama of ancient metazoan macromolecular complexes. Nature 407 26344197
2008 The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. Chemico-biological interactions 315 19027726
2011 Toward an understanding of the protein interaction network of the human liver. Molecular systems biology 207 21988832
1992 Human liver protein map: a reference database established by microsequencing and gel comparison. Electrophoresis 129 1286669
2013 Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Journal of proteomics 126 23376485
1993 Ligand-binding properties of the two isoforms of the human insulin receptor. Endocrinology 121 8440175
2015 Biliverdin reductase isozymes in metabolism. Trends in endocrinology and metabolism: TEM 120 25726384
1993 Plasma and red blood cell protein maps: update 1993. Electrophoresis 118 8313871
2007 Toward a confocal subcellular atlas of the human proteome. Molecular & cellular proteomics : MCP 114 18029348
2021 Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America 113 34349018
2001 Structure of human biliverdin IXbeta reductase, an early fetal bilirubin IXbeta producing enzyme. Nature structural biology 108 11224564
2018 Comparison of 2-Aminobenzamide, Procainamide and RapiFluor-MS as Derivatizing Agents for High-Throughput HILIC-UPLC-FLR-MS N-glycan Analysis. Frontiers in chemistry 94 30094234
2003 The binding sites on human heme oxygenase-1 for cytochrome p450 reductase and biliverdin reductase. The Journal of biological chemistry 77 12626517
2020 N-Terminomics for the Identification of In Vitro Substrates and Cleavage Site Specificity of the SARS-CoV-2 Main Protease. Proteomics 70 33111431
1994 Biliverdin-IX alpha reductase and biliverdin-IX beta reductase from human liver. Purification and characterization. The Journal of biological chemistry 70 7929092
2021 Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy. Acta pharmaceutica Sinica. B 66 35256949
2022 Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery. Nature communications 65 35831314
2020 Proteome-wide identification of HSP70/HSC70 chaperone clients in human cells. PLoS biology 65 32687490
2020 Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D. Nature communications 60 31980649
2016 MicroRNA-127-5p targets the biliverdin reductase B/nuclear factor-κB pathway to suppress cell growth in hepatocellular carcinoma cells. Cancer science 55 26708147
2016 BLVRB redox mutation defines heme degradation in a metabolic pathway of enhanced thrombopoiesis in humans. Blood 37 27207795
2009 FLR-2, the glycoprotein hormone alpha subunit, is involved in the neural control of intestinal functions in Caenorhabditis elegans. Genes to cells : devoted to molecular & cellular mechanisms 27 19735483
1993 Mutations within the FLR exon of NF1 are rare in myelodysplastic syndromes and acute myelocytic leukemias. Leukemia 16 8321021
2020 Divergent erythroid megakaryocyte fates in Blvrb-deficient mice establish non-overlapping cytoprotective functions during stress hematopoiesis. Free radical biology & medicine 15 33359909
2005 FLR-4, a novel serine/threonine protein kinase, regulates defecation rhythm in Caenorhabditis elegans. Molecular biology of the cell 13 15647385
1995 Mapping of the newly identified biliverdin-IX beta reductase gene (BLVRB) to human chromosome 19q13.13-->q13.2 by fluorescence in situ hybridization. Cytogenetics and cell genetics 12 7656592
2023 Opposing action of the FLR-2 glycoprotein hormone and DRL-1/FLR-4 MAP kinases balance p38-mediated growth and lipid homeostasis in C. elegans. PLoS biology 11 37773960
2011 Ultradian rhythm in the intestine of Caenorhabditis elegans is controlled by the C-terminal region of the FLR-1 ion channel and the hydrophobic domain of the FLR-4 protein kinase. Genes to cells : devoted to molecular & cellular mechanisms 9 21518154
1994 Mutation analysis of RASK and the 'FLR exon' of NF1 in sporadic ovarian carcinoma. European journal of cancer (Oxford, England : 1990) 6 8018414
2023 IGF1 synthesis after CO2 fractional laser resurfacing (FLR): New insights in the treatment of scalp actinic keratoses. Lasers in surgery and medicine 5 37222180
1997 On the recovery of single spots with the flr phenotype in the wing spot test in Drosophila. Mutation research 4 9330625
2025 Small molecule BLVRB redox inhibitor promotes megakaryocytopoiesis and stress thrombopoiesis in vivo. Nature communications 2 40216753
2021 FLR: A Revolutionary Alignment-Free Similarity Analysis Methodology for DNA-Sequences. IEEE/ACM transactions on computational biology and bioinformatics 2 31976902
2018 Whole-Genome Sequences of Zika Virus FLR Strains after Passage in Vero or C6/36 Cells. Genome announcements 2 29371358
2021 Profiling, Relative Quantification, and Identification of Sialylated N-Linked Oligosaccharides by UPLC-FLR-ESI/MS After Derivatization with Fluorescent Anthranilamide. Methods in molecular biology (Clifton, N.J.) 1 33908012
2026 The TWK-26/KCNK3 potassium channel and FLR-4 protein kinase coordinate nutrient absorption in the C. elegans intestine. Genetics 0 41700736
2025 The TWK-26/KCNK3 potassium channel and FLR-4 protein kinase coordinate nutrient absorption in the C. elegans intestine. bioRxiv : the preprint server for biology 0 38766028
2025 Deep Red Blood Cell Proteome Defines the Band 3 N-Terminus Interactome as a Regulator of Hypoxic Adaptation via BLVRB-Dependent S -Nitroso Transfer. bioRxiv : the preprint server for biology 0 41394639