Affinage

BFAR

Bifunctional apoptosis regulator · UniProt Q9NZS9

Length
450 aa
Mass
52.7 kDa
Annotated
2026-04-28
100 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

BFAR (Bifunctional Apoptosis Regulator) is an intracellular membrane-anchored scaffold protein that bridges the extrinsic and intrinsic apoptosis pathways: its DED-like domain binds procaspases-8 and -10 to suppress Fas-induced cell death, while its SAM domain interacts with Bcl-2 and Bcl-XL to suppress Bax-induced apoptosis, enabling formation of a procaspase-8/Bcl-2 complex (PMID:10716992). BFAR localizes predominantly to the endoplasmic reticulum, is highly expressed in neurons, and confers broad cytoprotection against mitochondrial, death-receptor, and ER-stress-mediated apoptosis; its knockdown sensitizes neuronal cells to cell death (PMID:14502241). BFAR also promotes gastric cancer cell proliferation and metastasis through activation of the PI3K/AKT/mTOR signaling pathway (PMID:37253905).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2000 High

    The foundational question of how a single protein could suppress both extrinsic and intrinsic apoptosis was answered by the identification of BFAR as a bifunctional scaffold whose DED-like domain engages procaspases-8/-10 and whose SAM domain engages Bcl-2/Bcl-XL, physically bridging the two pathways.

    Evidence Yeast-based screen for Bax-death suppressors, co-immunoprecipitation, domain deletion/mutagenesis, and functional cell death assays in yeast and mammalian cells

    PMID:10716992

    Open questions at the time
    • Subcellular localization in mammalian cells was inferred but not directly mapped by imaging
    • In vivo physiological relevance (knockout animal) not established
    • Structural basis of SAM–Bcl-2 and DED–procaspase interactions unresolved
  2. 2003 High

    The open question of where BFAR acts and whether it is physiologically relevant in a defined cell type was resolved by demonstrating ER localization in neurons, broad cytoprotection against mitochondrial, death-receptor, and ER-stress stimuli, and identification of additional partners (HIP1, Hippi, Bap31).

    Evidence Immunofluorescence microscopy, overexpression/cell viability assays, antisense oligonucleotide knockdown, co-immunoprecipitation/pulldown in neuronal CSM 14.1 cells

    PMID:14502241

    Open questions at the time
    • Functional significance of HIP1, Hippi, and Bap31 interactions for BFAR's anti-apoptotic activity not dissected
    • No genetic loss-of-function model in vivo
    • Mechanism by which ER-localized BFAR protects against diverse death stimuli not delineated
  3. 2023 Medium

    Beyond apoptosis regulation, BFAR was linked to pro-tumorigenic signaling: it promotes gastric cancer cell proliferation and metastasis via PI3K/AKT/mTOR pathway activation, and is a direct target of the anti-cancer compound bufalin.

    Evidence Human proteome microarray, molecular docking, siRNA knockdown, proliferation/migration assays, and in vivo xenograft tumor model

    PMID:37253905

    Open questions at the time
    • Direct biochemical mechanism linking BFAR to PI3K/AKT/mTOR activation not reconstituted
    • Whether the oncogenic role is dependent on or independent of BFAR's classical anti-apoptotic scaffold function is unknown
    • Bufalin–BFAR binding site validated only by molecular docking, not by mutagenesis or structural determination

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include the structural basis of BFAR's multi-domain interactions, the in vivo phenotype of BFAR loss-of-function, and the mechanism by which an ER-localized apoptosis scaffold activates PI3K/AKT/mTOR signaling.
  • No crystal or cryo-EM structure of BFAR or its complexes
  • No knockout or conditional knockout animal model reported
  • Relationship between ER-localized anti-apoptotic function and PI3K/AKT/mTOR activation uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2
Localization
GO:0005783 endoplasmic reticulum 1
Pathway
R-HSA-5357801 Programmed Cell Death 2 R-HSA-162582 Signal Transduction 1

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 BAR (BFAR/Bifunctional Apoptosis Regulator) was identified as an apoptosis regulator containing a SAM domain required for interactions with Bcl-2 and Bcl-XL and suppression of Bax-induced cell death, plus a DED-like domain responsible for interaction with DED-containing procaspases (procaspases-8 and -10) and suppression of Fas-induced apoptosis. BAR can bridge procaspase-8 and Bcl-2 into a protein complex, and is anchored in intracellular membranes where Bcl-2 resides. Yeast-based screen for inhibitors of Bax-induced cell death; Co-immunoprecipitation; domain mutagenesis; mammalian and yeast cell death assays Proceedings of the National Academy of Sciences of the United States of America High 10716992
2003 BAR (BFAR) protein localizes predominantly to the endoplasmic reticulum (ER) in neuronal cells, as demonstrated by immunofluorescence microscopy. Overexpression of BAR in CSM 14.1 neuronal cells conferred significant protection from diverse cell death stimuli including mitochondrial pathway activators, TNF-family death receptor stimulation, and ER stress. Downregulation of BAR by antisense oligonucleotides sensitized neuronal cells to apoptosis. Novel interaction partners identified include HIP1, Hippi, and Bap31. Immunofluorescence microscopy; overexpression with cell viability assays; antisense oligonucleotide knockdown; co-immunoprecipitation/pulldown for interaction partners Cell death and differentiation High 14502241
2023 BFAR is a direct interaction protein of bufalin (identified by human proteome microarray with 21,838 proteins) and promotes GC occurrence and metastasis by activating the PI3K/AKT/mTOR signaling pathway in vitro and in vivo. Bufalin inhibits GC by downregulating BFAR expression, reversing the pro-tumorigenic effect. Molecular docking predicted binding sites between bufalin and BFAR. Human proteome microarray; molecular docking; Western blotting; CCK-8 proliferation assay; scratch wound healing and transwell migration assays; in vivo tumor model; siRNA knockdown Apoptosis : an international journal on programmed cell death Medium 37253905

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 BAR domains as sensors of membrane curvature: the amphiphysin BAR structure. Science (New York, N.Y.) 1388 14645856
2002 Identification of membrane-type receptor for bile acids (M-BAR). Biochemical and biophysical research communications 812 12419312
2006 Mechanism of endophilin N-BAR domain-mediated membrane curvature. The EMBO journal 497 16763559
2015 Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. mBio 342 25968644
1987 Characterization of the herbicide-resistance gene bar from Streptomyces hygroscopicus. The EMBO journal 309 16453790
2012 Membrane curvature and its generation by BAR proteins. Trends in biochemical sciences 229 23058040
2015 When Physics Takes Over: BAR Proteins and Membrane Curvature. Trends in cell biology 224 26519988
2010 Differential G-protein-coupled receptor phosphorylation provides evidence for a signaling bar code. The Journal of biological chemistry 174 21177246
2007 DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations. Nucleic acids research 173 17576693
2006 The BAR domain proteins: molding membranes in fission, fusion, and phagy. Microbiology and molecular biology reviews : MMBR 167 16524918
2010 I-BAR domain proteins: linking actin and plasma membrane dynamics. Current opinion in cell biology 161 21093245
2000 BAR: An apoptosis regulator at the intersection of caspases and Bcl-2 family proteins. Proceedings of the National Academy of Sciences of the United States of America 159 10716992
2017 Friction Mediates Scission of Tubular Membranes Scaffolded by BAR Proteins. Cell 154 28648660
2017 Cargo-selective SNX-BAR proteins mediate retromer trimer independent retrograde transport. The Journal of cell biology 140 28935632
2007 The PX-BAR membrane-remodeling unit of sorting nexin 9. The EMBO journal 140 17948057
2005 BAR domains and membrane curvature: bringing your curves to the BAR. Biochemical Society symposium 135 15649145
2013 Membrane-sculpting BAR domains generate stable lipid microdomains. Cell reports 125 24055060
2019 Curving Cells Inside and Out: Roles of BAR Domain Proteins in Membrane Shaping and Its Cellular Implications. Annual review of cell and developmental biology 122 31340125
2009 I-BAR domains, IRSp53 and filopodium formation. Seminars in cell & developmental biology 120 19913105
2011 Bar-coded hydrogel microparticles for protein detection: synthesis, assay and scanning. Nature protocols 110 22015846
2020 Non-Viral in Vitro Gene Delivery: It is Now Time to Set the Bar! Pharmaceutics 107 32098191
2019 Molecular identification of a BAR domain-containing coat complex for endosomal recycling of transmembrane proteins. Nature cell biology 94 31576058
2011 Membrane shaping by the Bin/amphiphysin/Rvs (BAR) domain protein superfamily. Cellular and molecular life sciences : CMLS 89 21769645
2018 Phospho-Tau Bar Code: Analysis of Phosphoisotypes of Tau and Its Application to Tauopathy. Frontiers in neuroscience 88 29467609
2017 Lipid-mediated PX-BAR domain recruitment couples local membrane constriction to endocytic vesicle fission. Nature communications 87 28627515
2009 A unifying mechanism accounts for sensing of membrane curvature by BAR domains, amphipathic helices and membrane-anchored proteins. Seminars in cell & developmental biology 83 20006726
1981 Sequence complexity of circular Epstein-Bar virus DNA in transformed cells. Journal of virology 83 6270367
2011 Pinkbar is an epithelial-specific BAR domain protein that generates planar membrane structures. Nature structural & molecular biology 81 21743456
2014 The F-BAR protein PSTPIP1 controls extracellular matrix degradation and filopodia formation in macrophages. Blood 74 24421327
2007 PICK1-ICA69 heteromeric BAR domain complex regulates synaptic targeting and surface expression of AMPA receptors. The Journal of neuroscience : the official journal of the Society for Neuroscience 74 18032668
2010 Structural characteristics of BAR domain superfamily to sculpt the membrane. Seminars in cell & developmental biology 71 20083215
2021 Homeostatic membrane tension constrains cancer cell dissemination by counteracting BAR protein assembly. Nature communications 69 34635648
2014 Design and analysis of Bar-seq experiments. G3 (Bethesda, Md.) 69 24192834
2020 Mechanism of cargo recognition by retromer-linked SNX-BAR proteins. PLoS biology 68 32150533
2018 Poly(ADP-ribose) polymerase 1 searches DNA via a 'monkey bar' mechanism. eLife 67 30088474
2015 F-BAR family proteins, emerging regulators for cell membrane dynamic changes-from structure to human diseases. Journal of hematology & oncology 67 25956236
2004 Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Proceedings of the National Academy of Sciences of the United States of America 63 15258289
2019 Management of recurrent and metastatic oral cavity cancer: Raising the bar a step higher. Oral oncology 61 31837576
2017 Deciphering the BAR code of membrane modulators. Cellular and molecular life sciences : CMLS 59 28243699
2010 I-BAR protein antagonism of endocytosis mediates directional sensing during guided cell migration. The Journal of cell biology 54 20385776
2009 Modeling membrane deformations and lipid demixing upon protein-membrane interaction: the BAR dimer adsorption. Biophysical journal 54 19751667
1996 The similarities of bar and pat gene products make them equally applicable for plant engineers. Nature biotechnology 54 9631092
2016 The Potential Power of Bar-HRM Technology in Herbal Medicine Identification. Frontiers in plant science 52 27066026
2014 Multi-target stool DNA test: a new high bar for noninvasive screening. Digestive diseases and sciences 52 25492503
2015 FlnA binding to PACSIN2 F-BAR domain regulates membrane tubulation in megakaryocytes and platelets. Blood 49 25838348
2014 Direct interaction of actin filaments with F-BAR protein pacsin2. EMBO reports 49 25216944
1998 lambda bar minigene-mediated inhibition of protein synthesis involves accumulation of peptidyl-tRNA and starvation for tRNA. The EMBO journal 48 9649445
2013 The F-BAR protein Cip4/Toca-1 antagonizes the formin Diaphanous in membrane stabilization and compartmentalization. Journal of cell science 46 23424199
2022 Disposable Puff Bar Electronic Cigarettes: Chemical Composition and Toxicity of E-liquids and a Synthetic Coolant. Chemical research in toxicology 44 35849830
2016 New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana. The Plant journal : for cell and molecular biology 44 27401965
2014 Hypertrophic cardiomyopathy: a heart in need of an energy bar? Frontiers in physiology 44 25191275
2004 Raising the bar: how HIF-1 helps determine tumor radiosensitivity. Cell cycle (Georgetown, Tex.) 44 15326390
2003 Bifunctional apoptosis inhibitor (BAR) protects neurons from diverse cell death pathways. Cell death and differentiation 44 14502241
2017 Bin1 directly remodels actin dynamics through its BAR domain. EMBO reports 43 28893863
2012 The F-BAR protein CIP4 inhibits neurite formation by producing lamellipodial protrusions. Current biology : CB 42 22361215
2010 Cell deformation cytometry using diode-bar optical stretchers. Journal of biomedical optics 41 20799841
2013 Syndapin--a membrane remodelling and endocytic F-BAR protein. The FEBS journal 40 23668323
2012 Bin2 is a membrane sculpting N-BAR protein that influences leucocyte podosomes, motility and phagocytosis. PloS one 40 23285027
2010 The active zone T-bar--a plasticity module? Journal of neurogenetics 40 20553221
2018 From the raw bar to the bench: Bivalves as models for human health. Developmental and comparative immunology 39 30503358
2016 The F-BAR protein pacsin2 inhibits asymmetric VE-cadherin internalization from tensile adherens junctions. Nature communications 39 27417273
2015 The I-BAR protein Ivy1 is an effector of the Rab7 GTPase Ypt7 involved in vacuole membrane homeostasis. Journal of cell science 39 25999476
1993 Use of bar as a selectable marker gene and for the production of herbicide-resistant rice plants from protoplasts. Plant molecular biology 39 8467080
2023 Bufalin targeting BFAR inhibits the occurrence and metastasis of gastric cancer through PI3K/AKT/mTOR signal pathway. Apoptosis : an international journal on programmed cell death 38 37253905
2020 A heterodimeric SNX4--SNX7 SNX-BAR autophagy complex coordinates ATG9A trafficking for efficient autophagosome assembly. Journal of cell science 37 32513819
2022 Activated I-BAR IRSp53 clustering controls the formation of VASP-actin-based membrane protrusions. Science advances 36 36240267
2019 The interplay between Epstein-Bar virus (EBV) with the p53 and its homologs during EBV associated malignancies. Heliyon 36 31840114
2013 Formation of membrane ridges and scallops by the F-BAR protein Nervous Wreck. Molecular biology of the cell 36 23761074
2017 Non-specific activities of the major herbicide-resistance gene BAR. Nature plants 33 29180815
2013 Loss of the F-BAR protein CIP4 reduces platelet production by impairing membrane-cytoskeleton remodeling. Blood 33 23881916
2005 DNA-BAR: distinguisher selection for DNA barcoding. Bioinformatics (Oxford, England) 32 15961439
2015 Different functional modes of BAR domain proteins in formation and plasticity of mammalian postsynapses. Journal of cell science 31 26285709
2012 The F-BAR protein NOSTRIN participates in FGF signal transduction and vascular development. The EMBO journal 31 22751148
2019 Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7. Nature communications 30 31628328
2016 Dynamics of membrane nanotubes coated with I-BAR. Scientific reports 30 27444356
2009 The pleiotropic effects of the bar gene and glufosinate on the Arabidopsis transcriptome. Plant biotechnology journal 30 19222808
2021 A PX-BAR protein Mvp1/SNX8 and a dynamin-like GTPase Vps1 drive endosomal recycling. eLife 29 34524084
2018 FAM92A1 is a BAR domain protein required for mitochondrial ultrastructure and function. The Journal of cell biology 29 30404948
2014 The inverse BAR domain protein IBARa drives membrane remodeling to control osmoregulation, phagocytosis and cytokinesis. Journal of cell science 29 24463811
2012 The F-BAR protein PACSIN2 regulates epidermal growth factor receptor internalization. The Journal of biological chemistry 29 23129763
2011 Attachment of rod-like (BAR) proteins and membrane shape. Mini reviews in medicinal chemistry 29 21428902
2017 FecX Bar a Novel BMP15 mutation responsible for prolificacy and female sterility in Tunisian Barbarine Sheep. BMC genetics 28 28506298
2006 Cooperation of phosphoinositides and BAR domain proteins in endosomal tubulation. Traffic (Copenhagen, Denmark) 28 17010122
2019 Raising the bar in anticancer therapy: recent advances in, and perspectives on, telomerase inhibitors. Drug discovery today 27 31136800
2016 Linking up at the BAR: Oligomerization and F-BAR protein function. Cell cycle (Georgetown, Tex.) 27 27245932
2014 F-BAR domain protein Rga7 collaborates with Cdc15 and Imp2 to ensure proper cytokinesis in fission yeast. Journal of cell science 27 25052092
2015 OCRL1 engages with the F-BAR protein pacsin 2 to promote biogenesis of membrane-trafficking intermediates. Molecular biology of the cell 26 26510499
2019 Unusual Organization of I-BAR Proteins on Tubular and Vesicular Membranes. Biophysical journal 24 31349990
2015 A role for F-BAR protein Rga7p during cytokinesis in S. pombe. Journal of cell science 24 25977474
2014 The BAR domain protein PICK1 controls vesicle number and size in adrenal chromaffin cells. The Journal of neuroscience : the official journal of the Society for Neuroscience 24 25100601
2013 The N-BAR domain protein, Bin3, regulates Rac1- and Cdc42-dependent processes in myogenesis. Developmental biology 24 23872330
2005 Multigeneration reproductive and developmental toxicity study of bar gene inserted into genetically modified potato on rats. Journal of toxicology and environmental health. Part A 24 16326439
2004 Induction and autoregulation of the anti-proneural gene Bar during retinal neurogenesis in Drosophila. Development (Cambridge, England) 24 15496446
1985 Ataxia-telangiectasia or Louis-Bar syndrome. Journal of the American Academy of Dermatology 24 2580869
2013 Antagonistic regulation of F-BAR protein assemblies controls actin polymerization during podosome formation. Journal of cell science 23 23525018
2012 Control of Rho GTPase function by BAR-domains. Small GTPases 23 22714417
2012 DNA sequencing and bar-coding using solid-state nanopores. Electrophoresis 23 23109189
2021 Comparing physical mechanisms for membrane curvature-driven sorting of BAR-domain proteins. Soft matter 22 33870384
2011 The F-BAR protein Rapostlin regulates dendritic spine formation in hippocampal neurons. The Journal of biological chemistry 22 21768103
2015 Rho1- and Pkc1-dependent phosphorylation of the F-BAR protein Syp1 contributes to septin ring assembly. Molecular biology of the cell 21 26179915