Affinage
Literature neighborhood

PRDX1 — Peroxiredoxin-1

Each node is a named partner Affinage cited in the mechanism_profile of PRDX1 or, at 2-hop, of one of its partners. Edges are directed cites relations: gene → partner. This is the literature graph as Affinage extracted it. No claim about the biology beyond “these papers said these proteins go together.”

← PRDX1 record hops: 1 2
centre gene partner with Affinage record partner without Affinage record node size ∝ n_partners · click any node to focus
… nodes … edges … hops

Named complexes for PRDX1

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How to read this

Edges come from the synthesis pass — every named protein partner Opus cited for a gene becomes a directed gene → partner edge. Not an external interactome (no STRING, no BioGRID); just what the literature corpus said goes together.

  • 1-hop: the gene's own partners. 2-hop: expand only through partners that have their own Affinage record, to avoid splaying into freetext symbols.
  • Green node = partner has its own record (clickable). Slate = literature-named but no record (complex name, alias, or off-universe gene).
  • Node size ∝ that node's own partner count. Popularity = how many distinct genes name this partner.
  • Edges are directed and asymmetric — A → B doesn't imply B → A.
  • Click any node to inspect its molecular activity, localization, pathway, and complex memberships.