Affinage

YPEL4

Protein yippee-like 4 · UniProt Q96NS1

Length
127 aa
Mass
14.3 kDa
Annotated
2026-06-11
9 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

YPEL4 is a Yippee-domain protein that functions in MAPK/ERK signaling and contributes to cell proliferation and red cell membrane integrity. It binds the Major Vault Protein (MVP) and activates the transcription factor Elk-1, an activity that MVP suppresses upon binding (PMID:20555386). Consistent with a pro-proliferative role, overexpression of YPEL4 in adrenocortical HAC15 cells stimulates proliferation and increases basal aldosterone production (PMID:27333825). In vivo, YPEL4 is required for normal erythrocyte biology: Ypel4-null mice develop secondary polycythemia with reticulocytosis, and their red blood cells show reduced deformability, ovalocytic morphology, reduced membrane Band 3 levels, and increased clearance from circulation, establishing an intrinsic role in red cell membrane integrity that does not depend on a direct YPEL4–Band 3 interaction (PMID:34354145). Beyond these findings, the molecular mechanism linking YPEL4 to its cellular phenotypes has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2010 Medium

    Established the first molecular partner and signaling readout for YPEL4 by showing it activates Elk-1 in the MAPK/ERK pathway and that this is gated by MVP binding.

    Evidence Yeast and mammalian two-hybrid, GST pull-down, co-immunoprecipitation, immunocytochemistry and Elk-1 reporter assay

    PMID:20555386

    Open questions at the time
    • Mechanism by which YPEL4 activates Elk-1 (direct vs indirect) not resolved
    • How MVP binding physically blocks the activity is unknown
    • No endogenous-level validation of the interaction or pathway
  2. 2016 Medium

    Linked YPEL4 to a concrete cellular phenotype by showing its overexpression drives adrenocortical proliferation and aldosterone output.

    Evidence Overexpression in HAC15 cells with XTT, crystal violet, and aldosterone measurement

    PMID:27333825

    Open questions at the time
    • No pathway placement connecting proliferation to the Elk-1/MVP axis
    • Loss-of-function in this system not tested
    • Mechanism of aldosterone induction unknown
  3. 2021 Medium

    Demonstrated an essential in vivo role for YPEL4 in red blood cell membrane integrity through a knockout mouse.

    Evidence Ypel4-null mouse with scanning electron microscopy, deformability assays, in vivo clearance, and membrane protein analysis

    PMID:34354145

    Open questions at the time
    • Molecular mechanism linking YPEL4 loss to reduced Band 3 not defined
    • Direct YPEL4–Band 3 interaction explicitly not supported
    • Relationship to the Elk-1/MVP/proliferation role not established
  4. 2023 Low

    Identified YPEL4 overexpression as selectively cytotoxic to transformed cells, hinting at a context-dependent pro-death activity.

    Evidence Gain-of-function forward genetic screen with cell death readout in mammalian cells

    PMID:37864183

    Open questions at the time
    • Single screen with no YPEL4-specific mechanistic follow-up
    • Pathway mediating selective death in transformed cells unknown
    • Apparent contradiction with pro-proliferative role unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The unifying molecular mechanism connecting YPEL4's Elk-1 activation, proliferative effects, and erythrocyte membrane role remains undefined.
  • No structural or biochemical basis for YPEL4 activity
  • No direct substrate or downstream effector identified
  • Mechanism controlling Band 3 levels in RBC membranes unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140110 transcription regulator activity 1
Pathway
R-HSA-162582 Signal Transduction 1
Partners
MVP

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 YPEL4 interacts with the Major Vault Protein (MVP) as identified by yeast two-hybrid screen and confirmed by mammalian two-hybrid assay, GST pull-down, co-immunoprecipitation, and immunocytochemistry; MVP inhibits YPEL4's ability to activate the transcription factor Elk-1 in the MAPK/ERK signaling pathway, as demonstrated by a reporter system. Yeast two-hybrid screen, mammalian two-hybrid assay, GST pull-down, co-immunoprecipitation, immunocytochemistry, reporter assay Biochemistry and cell biology = Biochimie et biologie cellulaire Medium 20555386
2016 Overexpression of YPEL4 in human adrenocortical HAC15 cells stimulates cell proliferation (measured by XTT assay and crystal violet staining) and increases basal aldosterone production, establishing a direct role for YPEL4 in adrenal cortical cell proliferation. Overexpression in HAC15 cells, XTT proliferation assay, crystal violet staining, aldosterone measurement Molecular and cellular endocrinology Medium 27333825
2021 Ypel4-null mice display secondary polycythemia with macro- and reticulocytosis, and Ypel4-null red blood cells (RBCs) show increased clearance from circulation, reduced deformability, ovalocytic morphology, and reduced Band 3 protein levels in RBC membranes, establishing an intrinsic role for Ypel4 in maintaining normal red cell membrane integrity. Physical interaction between YPEL4 and Band 3 protein was NOT supported by experimental evidence. Ypel4-null mouse model, scanning electron microscopy, RBC deformability assay, membrane protein analysis, in vivo clearance assay Scientific reports Medium 34354145
2023 In a gain-of-function forward genetic screen, YPEL4 was identified as one of 16 anticancer genes whose overexpression induces cell death selectively in transformed mammalian cells. Gain-of-function forward genetic screen in mammalian cells (overexpression, cell death assay) Cell communication and signaling : CCS Low 37864183

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 MVP interacts with YPEL4 and inhibits YPEL4-mediated activities of the ERK signal pathway. Biochemistry and cell biology = Biochimie et biologie cellulaire 33 20555386
2021 Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke. Journal of the American Heart Association 19 34668383
2018 Potential important roles and signaling mechanisms of YPEL4 in pulmonary diseases. Clinical and translational medicine 11 29892964
2021 Yippee like 4 (Ypel4) is essential for normal mouse red blood cell membrane integrity. Scientific reports 9 34354145
2016 YPEL4 modulates HAC15 adrenal cell proliferation and is associated with tumor diameter. Molecular and cellular endocrinology 9 27333825
2024 Identification of common biomarkers in diabetic kidney disease and cognitive dysfunction using machine learning algorithms. Scientific reports 6 39333211
2025 Investigation of the Molecular Mechanism of Asthma in Meishan Pigs Using Multi-Omics Analysis. Animals : an open access journal from MDPI 2 39858200
2024 Differential mRNA profiles reveal the potential roles of genes involved in lactate stimulation in mouse macrophages. Genomics 2 38432499
2023 Genetic screening for anticancer genes highlights FBLN5 as a synthetic lethal partner of MYC. Cell communication and signaling : CCS 1 37864183

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