Affinage

YPEL4

Protein yippee-like 4 · UniProt Q96NS1

Length
127 aa
Mass
14.3 kDa
Annotated
2026-04-28
9 papers in source corpus 4 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

YPEL4 is a Yippee-domain protein that functions in ERK/MAPK signaling, cell proliferation, and red blood cell membrane integrity. It activates Elk-1 in the MAPK/ERK pathway, an activity inhibited by its physical interaction with the major vault protein (MVP), as demonstrated by multiple orthogonal biochemical assays (PMID:20555386). Overexpression of YPEL4 in adrenocortical cells stimulates proliferation and basal aldosterone production (PMID:27333825). Loss of Ypel4 in mice causes ovalocytic red blood cell morphology, reduced deformability, increased RBC clearance, and decreased Band 3 membrane protein levels, establishing an intrinsic role in maintaining erythrocyte membrane structure (PMID:34354145).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2010 High

    The discovery that YPEL4 physically interacts with MVP and that MVP suppresses YPEL4-mediated Elk-1 activation established YPEL4 as a signaling-active protein regulated by vault-associated mechanisms, placing it within the MAPK/ERK pathway.

    Evidence Yeast two-hybrid, GST pull-down, co-immunoprecipitation, mammalian two-hybrid, and Elk-1 reporter assays in mammalian cells

    PMID:20555386

    Open questions at the time
    • Whether YPEL4 directly activates upstream kinases or acts at the level of Elk-1 itself is unknown
    • The structural basis of the YPEL4–MVP interaction has not been resolved
    • Whether endogenous MVP regulation of YPEL4 occurs in physiological contexts is untested
  2. 2016 Medium

    Demonstrating that YPEL4 overexpression promotes adrenocortical cell proliferation and aldosterone secretion linked its signaling activity to a specific endocrine cellular context.

    Evidence Overexpression in HAC15 adrenocortical cells with XTT assay, crystal violet staining, and aldosterone measurement

    PMID:27333825

    Open questions at the time
    • Loss-of-function experiments in adrenal cells have not been performed
    • Whether the proliferative effect depends on the MAPK/ERK–Elk-1 axis identified earlier is untested
    • The mechanism by which YPEL4 enhances aldosterone production is unknown
  3. 2021 High

    Knockout mouse studies revealed an unanticipated, cell-intrinsic requirement for YPEL4 in erythrocyte membrane integrity, showing that its loss causes ovalocytosis, reduced deformability, and diminished Band 3 levels — broadening its known biology beyond signaling.

    Evidence Ypel4-null mouse model analyzed by scanning electron microscopy, RBC deformability assays, membrane protein quantification, and in vivo clearance assays

    PMID:34354145

    Open questions at the time
    • No direct physical interaction between YPEL4 and Band 3 was detected; the mechanism by which YPEL4 maintains Band 3 levels is unknown
    • Whether YPEL4 acts during erythropoiesis or in mature RBCs has not been determined
    • Human genetic evidence linking YPEL4 mutations to hereditary ovalocytosis is lacking

Open questions

Synthesis pass · forward-looking unresolved questions
  • How YPEL4's Yippee/zinc-finger-like domain contributes to its molecular activity — whether enzymatic, scaffolding, or otherwise — remains unresolved, and the relationship between its MAPK signaling role and its erythrocyte membrane function is unknown.
  • No enzymatic activity or substrate has been identified for YPEL4
  • No structural model of YPEL4 exists
  • The connection between MAPK/ERK signaling activity and RBC membrane maintenance has not been investigated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 1
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-162582 Signal Transduction 2
Partners
MVP

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 YPEL4 interacts with the major vault protein (MVP) as identified by yeast two-hybrid screen and confirmed by mammalian two-hybrid assay, GST pull-down, co-immunoprecipitation, and immunocytochemistry. MVP inhibits YPEL4's ability to activate Elk-1 in the MAPK/ERK signaling pathway, as demonstrated by a reporter system. Yeast two-hybrid screen, GST pull-down, co-immunoprecipitation, mammalian two-hybrid assay, immunocytochemistry, Elk-1 reporter assay Biochemistry and cell biology High 20555386
2016 YPEL4 overexpression in human adrenocortical HAC15 cells stimulates cell proliferation (measured by XTT assay and crystal violet staining) and increases basal aldosterone production, indicating a pro-proliferative role in adrenal cortical cells. Overexpression in HAC15 cells, XTT assay, crystal violet staining, aldosterone measurement Molecular and cellular endocrinology Medium 27333825
2021 Ypel4-null mice exhibit red blood cell membrane integrity defects including ovalocytic morphology, reduced deformability, increased RBC clearance, and reduced Band 3 protein levels in RBC membranes, demonstrating an intrinsic role for Ypel4 in maintaining normal RBC membrane structure. No direct physical interaction between YPEL4 and Band 3 was detected. Ypel4-null mouse model, scanning electron microscopy, RBC deformability assay, membrane protein analysis, in vivo clearance assay Scientific reports High 34354145
2023 YPEL4 was identified as an anticancer gene in a gain-of-function forward genetic screen in mammalian cells, where its ectopic overexpression selectively induced cell death in transformed cells. Gain-of-function forward genetic screen in mammalian cells Cell communication and signaling Low 37864183

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 MVP interacts with YPEL4 and inhibits YPEL4-mediated activities of the ERK signal pathway. Biochemistry and cell biology = Biochimie et biologie cellulaire 33 20555386
2021 Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke. Journal of the American Heart Association 19 34668383
2018 Potential important roles and signaling mechanisms of YPEL4 in pulmonary diseases. Clinical and translational medicine 11 29892964
2021 Yippee like 4 (Ypel4) is essential for normal mouse red blood cell membrane integrity. Scientific reports 9 34354145
2016 YPEL4 modulates HAC15 adrenal cell proliferation and is associated with tumor diameter. Molecular and cellular endocrinology 9 27333825
2024 Identification of common biomarkers in diabetic kidney disease and cognitive dysfunction using machine learning algorithms. Scientific reports 4 39333211
2025 Investigation of the Molecular Mechanism of Asthma in Meishan Pigs Using Multi-Omics Analysis. Animals : an open access journal from MDPI 2 39858200
2024 Differential mRNA profiles reveal the potential roles of genes involved in lactate stimulation in mouse macrophages. Genomics 2 38432499
2023 Genetic screening for anticancer genes highlights FBLN5 as a synthetic lethal partner of MYC. Cell communication and signaling : CCS 1 37864183