Affinage

VIL1

Villin-1 · UniProt P09327

Length
827 aa
Mass
92.7 kDa
Annotated
2026-06-14
40 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

VIL1 (villin-1) is an actin-regulatory protein of absorptive epithelial brush borders that organizes the apical actin cytoskeleton and maintains epithelial barrier integrity (PMID:29274870, PMID:40835194, PMID:24410933). Its F-actin binding is mediated through Cys624: covalent modification of this residue by an enterotoxin triggers F-actin disassembly and barrier failure, while a protective small molecule that shields Cys624 allosterically enhances F-actin binding affinity and preserves barrier integrity (PMID:40835194). Across absorptive cell types VIL1 (and its fish ortholog VILL) is required for formation of apical microvilli (PMID:24410933). In intestinal epithelial cells, VIL1 together with gelsolin is required for dephosphorylation of EIF2A and recovery from cell stress; their chronic loss produces constitutive EIF2A phosphorylation and integrated stress response activation, IRGM1 overexpression, and RIPK3-mediated necroptotic death, with double-knockout mice developing spontaneous Crohn's-like ileitis that is reversed by ISR or RIPK3 inhibition (PMID:29274870, PMID:42254860). In colorectal cancer cells VIL1 suppresses ferroptosis and promotes tumor growth by binding NF-κB p105 and driving NF-κB and lipocalin-2 (LCN2) expression (PMID:39658274). Release of VIL1 from injured brush-border cells into plasma tracks the severity of necroptotic proximal tubular injury (PMID:28704336).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2014 Medium

    Establishing whether villin-1 actively builds apical microvilli rather than merely decorating them, loss-of-function in a fish ortholog tied VILL directly to actin-based microvillus formation in absorptive cells.

    Evidence Morpholino knockdown of VILL in medaka gill ionocytes with immunofluorescence and scanning electron microscopy across salinity conditions

    PMID:24410933

    Open questions at the time
    • Ortholog in a fish model, not direct human VIL1
    • Does not define the molecular mechanism by which VILL nucleates or bundles apical actin
  2. 2017 High

    Connecting brush-border actin regulators to epithelial stress recovery, VIL1 and gelsolin were shown to be required for EIF2A dephosphorylation, linking their loss to constitutive stress signaling, necroptosis, and Crohn's-like inflammation.

    Evidence Villin-1/gelsolin double-knockout mice with histology, immunoblots, flow cytometry, electron microscopy, and corroboration in human CD tissue

    PMID:29274870

    Open questions at the time
    • Molecular link between VIL1 and the EIF2A phosphatase machinery not resolved
    • Whether the effect requires VIL1's actin-binding activity is untested
  3. 2017 Medium

    Testing whether VIL1 release reports epithelial death, plasmatic villin-1 was shown to rise with proximal tubular injury and to depend on necroptosis, validating it as a necroptosis-linked injury marker.

    Evidence Immunohistochemistry and Western blotting across rat, pig, and human renal/liver injury models with necrostatin-1 intervention

    PMID:28704336

    Open questions at the time
    • Mechanism of VIL1 redistribution and release not defined
    • Single lab; biomarker specificity versus other brush-border proteins unclear
  4. 2024 Medium

    Asking how VIL1 influences tumor cell fate, knockout/overexpression in colorectal cancer cells placed VIL1 upstream of ferroptosis suppression via direct NF-κB p105 binding and LCN2 induction.

    Evidence VIL1 knockout/overexpression in CRC lines with xenografts, transcriptomics, immunoblotting, and ferroptosis assays

    PMID:39658274

    Open questions at the time
    • Direct VIL1–NF-κB binding interface not mapped
    • Relationship between VIL1's actin role and NF-κB regulation unknown
    • Single lab
  5. 2025 High

    Identifying the molecular site of VIL1's actin control, Cys624 was shown to be the covalently targetable residue governing F-actin binding and barrier integrity.

    Evidence Intestinal organoids, chemical proteomics, Cys624 mutagenesis, in vitro F-actin binding assays, and in vivo barrier validation

    PMID:40835194

    Open questions at the time
    • Structural basis of Cys624-dependent actin binding not resolved
    • Whether physiological modification of Cys624 occurs endogenously is unknown
  6. 2026 Medium

    Resolving the causal hierarchy of VIL1-loss pathology, ISR and RIPK3 were placed downstream of VIL1 loss, with pharmacologic inhibition rescuing epithelial architecture and barrier function.

    Evidence Villin-1/gelsolin double-knockout mice and CD patient-derived enteroids with ISR/RIPK3 inhibitor rescue and transepithelial resistance readouts

    PMID:42254860

    Open questions at the time
    • Direct biochemical step connecting VIL1 loss to ISR activation still undefined
    • Single lab extending prior findings

Open questions

Synthesis pass · forward-looking unresolved questions
  • How VIL1's actin-bundling activity at the brush border mechanistically couples to its roles in EIF2A dephosphorylation and NF-κB binding remains unresolved.
  • No structural model linking actin binding to stress-signaling functions
  • Whether actin-independent scaffolding underlies the NF-κB and ISR roles is untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 2
Localization
GO:0005856 cytoskeleton 2 GO:0005886 plasma membrane 2
Pathway
R-HSA-5357801 Programmed Cell Death 2 R-HSA-8953897 Cellular responses to stimuli 2
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2017 VIL1 (villin-1) and gelsolin (GSN) are required for dephosphorylation of EIF2A (eukaryotic translation initiation factor 2 subunit alpha) and recovery from cell stress in intestinal epithelial cells (IECs). Under acute stress, EIF2A signaling reduces VIL1 and GSN expression; during prolonged stress, continued downregulation of VIL1 and GSN leads to constitutive EIF2A phosphorylation, IRGM1 overexpression, and necroptotic cell death. VIL1/GSN double-knockout mice develop spontaneous ileitis resembling Crohn's disease. Villin-1/gelsolin double-knockout mice, histology, immunoblots, phalloidin staining, immunohistochemistry, electron microscopy, flow cytometry, lentiviral GFP-EIF2A constructs, human CD patient tissue analysis Gastroenterology High 29274870
2024 VIL1 knockout in colorectal cancer (CRC) cells activates ferroptosis and inhibits migration, while VIL1 overexpression inhibits ferroptosis and promotes tumor growth. Mechanistically, VIL1 binds to NF-κB p105 and controls NF-κB expression; in vivo, VIL1 overexpression induces NF-κB and lipocalin-2 (LCN2) expression, identifying the VIL1/NF-κB axis as a regulator of CRC progression through ferroptosis modulation. VIL1 knockout and overexpression in CRC cell lines, in vivo tumor xenograft, transcriptomics, immunoblotting, cell proliferation and migration assays, apoptosis assays, ferroptosis assays The FEBS journal Medium 39658274
2025 The enterotoxin Euphorin G from Euphorbia fischeriana covalently modifies Cys624 of Villin-1, causing F-actin disassembly and intestinal barrier failure. Chebulinic acid from Terminalia chebula protects Villin-1 by non-covalently binding it and shielding Cys624 from covalent attack, while allosterically enhancing Villin-1's F-actin binding affinity, thereby preserving intestinal barrier integrity. Intestinal organoid models, chemical biology, proteomics, Villin-1 knockout and Cys624 mutagenesis, in vitro F-actin binding assays, in vivo validation of barrier integrity Journal of ethnopharmacology High 40835194
2014 In euryhaline medaka fish, the villin-1 homolog VILL is localized to the apical region of gill ionocytes and is required for formation of apical microvilli. VILL expression is induced by hypoosmotic conditions (freshwater acclimation), and morpholino knockdown of VILL eliminates apical protrusions of ionocytes and pavement cells, establishing a direct role for this villin-1 ortholog in actin-based microvillus formation in absorptive cells. Immunofluorescence localization, morpholino knockdown, scanning electron microscopy, quantitative Western blot and RT-PCR across salinity conditions Frontiers in zoology Medium 24410933
2017 Plasmatic villin-1 levels correspond with the severity of kidney injury during renal ischemia-reperfusion, and its release into plasma is associated with redistribution of villin-1 from proximal tubular brush-border cells. Treatment with necrostatin-1 (a necroptosis inhibitor) decreased plasmatic villin-1 levels earlier than other markers, linking villin-1 release to necroptotic cell death in proximal tubular cells. Immunohistochemistry on kidney sections, Western blotting of plasma from rat ischemia-reperfusion model and pig renal transplantation model, and in liver transplant patients developing AKI; necrostatin-1 pharmacological intervention Transplantation Medium 28704336
2026 In villin-1/gelsolin double-knockout mice, chronic integrated stress response (ISR) activation and RIPK3-mediated necroptosis converge to drive epithelial injury, Paneth cell expansion, and barrier dysfunction. Pharmacologic inhibition of ISR or RIPK3 (using ISR inhibitor, necrostatin-1, pazopanib, or ponatinib) restored villus architecture, epithelial survival, regeneration, and transepithelial electrical resistance, placing VIL1 loss upstream of ISR/necroptosis-mediated epithelial dysfunction. Villin-1/gelsolin double-knockout mice, Tnf mice, CD patient-derived enteroids, ISR inhibitor and RIPK3 inhibitor treatments, transepithelial electrical resistance measurement, enteroid formation/budding assays Gastro hep advances Medium 42254860

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment. PloS one 240 19956723
2003 Down-regulation of a gastric transcription factor, Sox2, and ectopic expression of intestinal homeobox genes, Cdx1 and Cdx2: inverse correlation during progression from gastric/intestinal-mixed to complete intestinal metaplasia. Journal of cancer research and clinical oncology 116 14655050
2010 Tumor lymphangiogenesis and metastasis to lymph nodes induced by cancer cell expression of podoplanin. The American journal of pathology 106 20616339
2021 Proteomics Analysis of Gastric Cancer Patients with Diabetes Mellitus. Journal of clinical medicine 62 33494396
2016 Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease. Journal of the American Society of Nephrology : JASN 62 26940098
2017 Villin-1 and Gelsolin Regulate Changes in Actin Dynamics That Affect Cell Survival Signaling Pathways and Intestinal Inflammation. Gastroenterology 60 29274870
2010 Differential expression proteomics of human colorectal cancer based on a syngeneic cellular model for the progression of adenoma to carcinoma. Proteomics 46 19899082
2015 A three-protein signature and clinical outcome in esophageal squamous cell carcinoma. Oncotarget 41 25605255
2009 Pdx1 inactivation restricted to the intestinal epithelium in mice alters duodenal gene expression in enterocytes and enteroendocrine cells. American journal of physiology. Gastrointestinal and liver physiology 40 19808654
2009 High-grade neuroendocrine carcinoma of the lung: comparative clinicopathological study of large cell neuroendocrine carcinoma and small cell lung carcinoma. Pathology international 37 19627535
2020 Regional Proteomic Quantification of Clinically Relevant Non-Cytochrome P450 Enzymes along the Human Small Intestine. Drug metabolism and disposition: the biological fate of chemicals 29 32350063
2019 Atg14 protects the intestinal epithelium from TNF-triggered villus atrophy. Autophagy 28 30894050
2004 Search for epithelial-specific mRNAs in peripheral blood of patients with colon cancer by RT-PCR. International journal of oncology 26 15375555
2015 A quantitative proteomics study on olfactomedin 4 in the development of gastric cancer. International journal of oncology 25 26398045
2010 Intestinal alpha-defensin expression in pediatric inflammatory bowel disease. Inflammatory bowel diseases 24 21910169
2016 Decreased Pregnane X Receptor Expression in Children with Active Crohn's Disease. Drug metabolism and disposition: the biological fate of chemicals 21 27013401
2019 Schlafen 3 knockout mice display gender-specific differences in weight gain, food efficiency, and expression of markers of intestinal epithelial differentiation, metabolism, and immune cell function. PloS one 19 31260507
1994 Regional mapping of loci from human chromosome 2q to sheep chromosome 2q. Genomics 18 8020939
2023 Assessing the effects of a mixed Eimeria spp. challenge on performance, intestinal integrity, and the gut microbiome of broiler chickens. Frontiers in veterinary science 17 37662988
2012 Villin 1 is a predictive factor for the recurrence of high serum alpha-fetoprotein-associated hepatocellular carcinoma after hepatectomy. Cancer science 17 22530999
2024 TTF-1 is a highly sensitive but not fully specific marker for pulmonary and thyroidal cancer: a tissue microarray study evaluating more than 17,000 tumors from 152 different tumor entities. Virchows Archiv : an international journal of pathology 14 39377914
2022 Effects of human induced pluripotent stem cell-derived intestinal organoids on colitis-model mice. Regenerative therapy 13 36161099
2015 Inflammation-Induced Downregulation of Butyrate Uptake and Oxidation Is Not Caused by a Reduced Gene Expression. Journal of cellular physiology 11 25059646
2023 Poly(I:C)-exposed zebrafish shows autism-like behaviors which are ameliorated by fabp2 gene knockout. Frontiers in molecular neuroscience 10 36683854
2017 Plasmatic Villin 1 Is a Novel In Vivo Marker of Proximal Tubular Cell Injury During Renal Ischemia-Reperfusion. Transplantation 8 28704336
2014 Medaka villin 1-like protein (VILL) is associated with the formation of microvilli induced by decreasing salinities in the absorptive ionocytes. Frontiers in zoology 8 24410933
2023 Diagnostic potential of plasma biomarkers and exhaled volatile organic compounds in predicting the different stages of acute mesenteric ischaemia: protocol for a multicentre prospective observational study (TACTIC study). BMJ open 7 37643848
2023 Lead induced structural and functional damage and microbiota dysbiosis in the intestine of crucian carp (Carassius auratus). Frontiers in microbiology 6 37731918
2021 Vil-Cre specific Schlafen 3 knockout mice exhibit sex-specific differences in intestinal differentiation markers and Schlafen family members expression levels. PloS one 5 34710177
1995 Thirteen loci physically assigned to sheep chromosome 2 by cell hybrid analysis and in situ hybridization. Mammalian genome : official journal of the International Mammalian Genome Society 5 8747925
2025 Serum Villin-1-A Novel Marker of Gut Barrier Damage in Acutely Decompensated Cirrhosis: A Cohort Study and Validation. Alimentary pharmacology & therapeutics 4 41340228
2016 The expression of VILL protein is hypoosmotic-dependent in the lamellar gill ionocytes of Otocephala teleost fish, Chanos chanos. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 4 27557990
2024 A customizable and low-cost 3D-printed transwell device coupled with 3D cell culture for permeability assay. HardwareX 3 39584016
2024 Villin-1 regulates ferroptosis in colorectal cancer progression. The FEBS journal 3 39658274
2025 Spasmolytic Polypeptide-Expressing Metaplasia (SPEM): the hidden linchpin in gastric carcinogenesis beyond the correa cascade. International journal of surgery (London, England) 2 41347923
2024 An Approach to Intersectionally Target Mature Enteroendocrine Cells in the Small Intestine of Mice. Cells 1 38201306
2024 Weiwei Decoction alleviates gastric intestinal metaplasia through the olfactomedin 4/nucleotide-binding oligomerization domain 1/caudal-type homeobox gene 2 signaling pathway. World journal of gastrointestinal oncology 1 39072182
2026 Comprehensive insights into the development of arabidopsis trichomes by single-nucleus RNA-seq. BMC plant biology 0 41772475
2026 Integrated Stress Response and Necroptosis Drive Epithelial Dysfunction in Crohn's Disease: Repurposing Cancer Drugs for Permeability Barrier Healing. Gastro hep advances 0 42254860
2025 Chebulinic acid shields Villin 1 from covalent attack to mitigate Euphorbia fischeriana enterotoxicity: A basis for safer anti-ascites therapy. Journal of ethnopharmacology 0 40835194

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