| 1994 |
E2A (TCF3) gene products (E12 and E47) are required for B cell formation; E2A-null mice completely lack mature B cells with a developmental block prior to immunoglobulin DJ rearrangement, demonstrating that E2A is a central regulator of early B cell differentiation. |
Gene targeting/knockout in mice, flow cytometry, PCR for Ig rearrangements |
Cell |
High |
8001124 8001125
|
| 1997 |
E2A transcriptionally activates the cyclin-dependent kinase inhibitor p21CIP1/WAF1 promoter through E-box elements (E1–E3) near the transcription start site, providing a mechanism for E2A-mediated growth suppression; Id1 overexpression inhibits p21 expression and accelerates cell growth. |
Luciferase reporter/cotransfection assays, promoter deletion/mutational analysis, endogenous p21 mRNA/protein quantification in 293T cells |
Molecular and cellular biology |
High |
9315646
|
| 1993 |
E2A proteins (E12 and E47) are subunits of B-cell-specific E2-box DNA-binding complexes; both E2A and E2-2 polypeptides are present in immunoglobulin enhancer-binding complexes in pre-B cells, whereas mature B cells contain only E2A products. |
Monoclonal antibody immunoprecipitation, mobility shift assay |
Molecular and cellular biology |
High |
8497267
|
| 2003 |
Notch signaling induces degradation of E2A proteins (E12 and E47) via MAP kinase (p42/p44)-dependent phosphorylation of E47, which enhances association with the SCF(Skp2) E3 ubiquitin ligase, leading to ubiquitination and proteasome-mediated degradation; this pathway is active in B and T cells. |
Co-immunoprecipitation, ubiquitination assay, proteasome inhibitor treatment, siRNA knockdown, dominant-negative and activated kinase expression |
The EMBO journal |
High |
14592976
|
| 2004 |
CHIP (carboxyl terminus of Hsc70-interacting protein) binds E47 through the E protein homology domains EHD2 and EHD3 and, together with Hsc70, forms a pre-ubiquitination complex with E47 and Skp2, facilitating E47 ubiquitination and proteasome-mediated degradation in a phosphorylation-dependent manner. |
Yeast two-hybrid screen, co-immunoprecipitation, siRNA knockdown, ubiquitination assay |
Molecular and cellular biology |
High |
15456869
|
| 1997 |
E2A proteins (E12/E47) are degraded via the ubiquitin-proteasome pathway; UbcE2A (a ubiquitin-conjugating enzyme) interacts specifically with a 54-amino acid region of E47 distinct from the HLH domain, and antisense UbcE2A reduces E12 degradation. |
Yeast two-hybrid, co-immunoprecipitation, proteasome inhibitor (MG132), in vivo ubiquitination, antisense RNA |
The Journal of biological chemistry |
High |
9013644
|
| 2002 |
E2A co-elutes with histone acetyltransferases p300, CBP, and PCAF in pre-B cell nuclear extracts; these HATs acetylate E2A in vitro, enhance E2A-mediated transcription, and promote nuclear retention of E2A; genetic interaction between E2A and p300 heterozygosity impairs B cell development. |
Gel filtration, co-immunoprecipitation, in vitro acetylation assay, transcription reporter assay, p300 catalytic mutant, compound heterozygous mouse crosses |
The Journal of biological chemistry |
High |
12435739
|
| 2001 |
Tcf3 acts independently of its β-catenin-interacting domain to suppress epidermal terminal differentiation and promote outer root sheath/bulge stem cell identity in skin; these functions are dependent on Tcf3's DNA-binding and Groucho repressor-binding domains. |
Transgenic mouse overexpression with domain deletion constructs, keratinocyte differentiation markers |
Genes & development |
High |
11445543
|
| 2006 |
Tcf3 governs stem cell features in skin; forced reactivation of Tcf3 in committed epidermal cells induces genes associated with an undifferentiated, Wnt-inhibited state and represses transcriptional regulators of all three skin differentiation lineages (epidermal, sebaceous, hair follicle). |
Inducible transgenic mouse system, gene expression profiling |
Cell |
High |
17018284
|
| 2010 |
Wnt signaling stimulates TCF3 phosphorylation by recruiting HIPK2 (homeodomain-interacting protein kinase 2) to TCF3 via β-catenin; this phosphorylation causes TCF3 dissociation from target gene promoters, derepressing Wnt target genes during anteroposterior axis specification in Xenopus. |
Xenopus embryo and mammalian cell phosphorylation assays, chromatin immunoprecipitation, phosphorylation-resistant TCF3 mutants, developmental gene expression readouts |
Developmental cell |
High |
20951344
|
| 2001 |
Tcf3 can inhibit β-catenin turnover by competing with axin and APC for β-catenin binding; Tcf3 is phosphorylated by both GSK3 and CK1ε, with CK1ε phosphorylation stimulating Tcf3–β-catenin binding (reversed by GSK3), and Tcf3 synergizes with CK1ε to stabilize β-catenin. |
Xenopus embryo and extract biochemistry, β-catenin degradation assays, dominant-negative constructs, peptide competition |
The Journal of cell biology |
High |
11524435
|
| 2011 |
Tcf3 functions as a transcriptional repressor in ESCs; genetic ablation of Tcf3 replaces the requirement for exogenous Wnt3a or GSK3 inhibition for ESC self-renewal, demonstrating that relief of Tcf3-mediated repression (not Tcf3–β-catenin transcriptional activation) is the necessary downstream effect of Wnt signaling; Tcf3 and Tcf1 together recruit Wnt-stabilized β-catenin to Oct4 binding sites. |
Genetic knockout, gene expression analysis, ChIP, Wnt3a treatment, GSK3 inhibitor treatment |
Nature cell biology |
High |
21685894
|
| 2012 |
Tcf3–β-catenin interaction is not required for gastrulation but is required for post-gastrulation development (limb, vascular, neural tube, eyelid); Tcf3 directly represses Lef1 transcription, and Wnt/β-catenin counteracts this repression, allowing Lef1–β-catenin complexes to activate target genes (indirect activation mechanism). |
Tcf3ΔN knock-in mouse (ablates β-catenin interaction), genetic analysis, gene expression |
Development |
High |
22573616
|
| 1999 |
EBF and E2A synergistically activate transcription of B-cell-specific genes including Pax5, Rag1, Rag2, and mb-1; Ebf+/−E2a+/− compound heterozygous mice show a marked pro-B cell defect greater than either single heterozygote, demonstrating genetic collaboration in B lymphopoiesis. |
Compound heterozygous mouse genetics, gene expression analysis, transfection synergy assay |
Immunity |
High |
10435576
|
| 2004 |
E2A is required for the complete cell-cycle arrest observed at the pre-TCR checkpoint; E2A-deficient thymocytes exhibit abnormal cell-cycle progression prior to pre-TCR expression, and E47 can act in concert with Bcl-2 to induce cell-cycle arrest in vitro. |
E2A conditional knockout, cell-cycle analysis, double-mutant epistasis (LAT, Lck, Fyn), in vitro cell-cycle arrest assay |
The EMBO journal |
High |
14685278
|
| 2002 |
E2A directly activates chromatin modification and germ-line transcription at the immunoglobulin kappa locus in pre-B cells; E2A binds the κEi and κE3' enhancers, and induction of E47 in E2A-deficient pre-B cells rescues Igκ germ-line transcription, Jκ accessibility, and V(D)J recombination; IRF-4 is required for E2A recruitment to κE3'. |
E2A-deficient pre-B cells, inducible E47 reconstitution, chromatin immunoprecipitation, recombination assay, IRF-4 knockdown |
Molecular and cellular biology |
High |
16428437
|
| 2004 |
E2A promotes survival of pre-B and mature B lymphocytes; conditional deletion of E2A in mature B cells causes rapid depletion within 24 h, and E2A/HEB double-deficient pre-B lines show dramatically enhanced apoptosis upon growth arrest. |
IFN-inducible Cre conditional knockout, adoptive transfer, apoptosis assay in double-deficient cell lines |
The Journal of experimental medicine |
Medium |
15078898
|
| 2006 |
E2A expression stimulates immunoglobulin hypermutation in chicken DT40 B cells; E2A inactivation strongly reduces Ig L chain mutation rate without affecting AID expression, and re-expression of E12 or E47 complements the defect, suggesting E2A recruits AID to Ig loci. |
E2A gene inactivation in DT40 cells, Ig hypermutation frequency assay, cDNA complementation |
Journal of immunology |
Medium |
16785535
|
| 2011 |
E2A binds enhancer elements across the FOXO1 locus to directly activate Foxo1 expression in common lymphoid progenitors; E2A and HEB jointly induce FOXO1 at the earliest stage of B-cell specification. |
ChIP (E2A binding to FOXO1 locus), gene expression in E2A- and HEB-deficient CLPs, compound knockout mice |
PNAS |
High |
21972416
|
| 2020 |
E2A directly activates expression of Rag genes in T and B cells through distinct sets of cis-regulatory elements (R-TEn in T cells; R1B/R2B in B cells); E2A binding to the E-box in R-TEn is essential for chromatin remodeling and Rag expression in T cells. |
Transgenic mice with enhancer deletions, E2A binding-site point mutation knock-in mice, chromatin conformation analysis, gene expression |
Science immunology |
High |
32887843
|
| 2001 |
E2A and HEB bind consecutive E-box elements in the pre-TCRα (pTα) promoter and directly activate pTα transcription; the specific E2A/HEB-DNA complex is observed exclusively in immature thymocytes and not in mature T cells. |
Promoter deletion analysis, EMSA, E2A/HEB overexpression, reporter assay in thymocytes |
Journal of immunology |
Medium |
11490000
|
| 2018 |
Alternative splicing of TCF3 (E2A) controlled by hnRNP H/F produces E12 and E47 isoforms; high hnRNP H/F in hESCs promotes E12, while decreased hnRNP H/F during differentiation switches to E47; E47 represses E-cadherin expression, whereas E12 does not, linking TCF3 splicing to maintenance of hESC pluripotency. |
siRNA knockdown of hnRNP H/F, isoform-specific expression analysis, E-cadherin reporter/expression assay, hESC differentiation |
Genes & development |
High |
30115631
|
| 2013 |
TCF3/E2A drives p21 (CDKN1A) expression while repressing PUMA (BBC3) across cancer cell types; TCF3/E2A depletion impairs cell-cycle arrest and promotes apoptosis upon p53 activation, placing TCF3/E2A as a pathway-specific coregulator of p53 target gene selectivity. |
Genome-wide genetic screen (siRNA), gene expression analysis, cell-cycle and apoptosis assays in multiple cancer cell lines |
Cell reports |
Medium |
23684607
|
| 2014 |
Tcf3 promotes keratinocyte migration and skin wound healing non-cell-autonomously through upregulation of the secreted factor lipocalin-2; Stat3 acts as an upstream activator of Tcf3 in this wound-repair context, and Tcf3's promigration effects are independent of β-catenin binding. |
Tcf3 overexpression, wound healing assay, conditioned medium experiments, lipocalin-2 neutralization, Stat3 epistasis |
Nature communications |
Medium |
24909826
|
| 2011 |
Tcf3 functions as a repressor of epigenome state in ES cells; Tcf3 deletion increases AcH3 and decreases H3K9me3 genome-wide, and Tcf3-null ES cells reprogram somatic neural precursor cells more efficiently upon cell fusion. |
Tcf3 knockout ES cells, chromatin immunoprecipitation for AcH3/H3K9me3, cell fusion reprogramming efficiency assay |
PNAS |
Medium |
21730189
|
| 2011 |
Tcf3 directly represses cdx4 expression through binding multiple sites in the cdx4 regulatory region, requiring Groucho/TLE and HDAC1 as corepressors; the transcription factor E4f1 derepresses cdx4 by dissociating corepressors from Tcf3 (without displacing Tcf3 from DNA), and the E3 ligase Lnx2b counteracts E4f1 as a scaffold. |
ChIP, reporter assays, co-IP, dominant-negative and overexpression in zebrafish embryos and mammalian cells |
The EMBO journal |
Medium |
21666599
|
| 1996 |
LYL1 forms heterodimeric complexes with E2A proteins (E12 and E47) via HLH motif interactions; endogenous LYL1–E2A complexes exist in hematolymphoid cells and bind a preferred DNA sequence (5'-AACAGATG(T/g)T-3') distinct from the muE2 site. |
Yeast two-hybrid, in vitro HLH interaction, immunoprecipitation, PCR-assisted site selection, EMSA |
Molecular and cellular biology |
Medium |
8628307
|
| 2000 |
E2A basic region residues establish DNA sequence specificity for particular CAN NTG E-box sites through the conformation of the basic region–DNA interaction; the E2A basic region can be directed toward different half-sites depending on its heterodimerization partner (e.g., MyoD or Twist). |
In vitro DNA binding assays with basic region mutants, site selection, heterodimer formation |
Molecular and cellular biology |
Medium |
10594029
|
| 2013 |
E2A transcription factors limit expression of Gata3 in DN2 thymocytes to enable T-lymphocyte commitment; genetic or siRNA-mediated reduction of Gata3 rescues T-cell differentiation in E2A-deficient DN2 cells, placing E2A upstream of Gata3 in the T-cell commitment pathway. |
E2A conditional knockout, siRNA of Gata3, flow cytometry, differentiation assays |
Blood |
High |
23297135
|
| 2007 |
Simultaneous conditional deletion of E2A and HEB in developing thymocytes causes a severe developmental block before pre-TCR expression and dramatic reduction of Pre-Tα expression, with increased IL-7-driven proliferation; E2A and HEB together enforce cell-cycle arrest prior to pre-TCR expression. |
Double conditional knockout mice (Cre-mediated), cell-cycle analysis, IL-7 stimulation, pre-Tα expression analysis |
Journal of immunology |
High |
17442955
|
| 2021 |
EZH2 epigenetically represses TCF3 expression (via H3K27 trimethylation), and DNMT3B independently methylates the TCF3 promoter to silence TCF3; TCF3 in turn directly activates CDKN1A (p21) transcription, establishing an EZH2/DNMT3B→TCF3→p21 axis in endometrial cancer. |
ChIP for H3K27me3, bisulfite sequencing of TCF3 promoter, TCF3 reporter assay, pharmacological inhibitors (GSK126, 5-Aza) in CDX and PDX models |
Cell death and differentiation |
Medium |
34175897
|
| 2024 |
Id2 disrupts assembly of a Tcf3–LSD1 complex (via its HLH domain binding Tcf3), thereby preventing LSD1-mediated removal of H3K4me2 from Tcf3-occupied E-boxes in the Slamf6 promoter; this epigenetic mechanism regulates the generation of Slamf6+ progenitor exhausted CD8+ T cells. |
Co-immunoprecipitation, ChIP for H3K4me2, Id2 knockout, LSD1 inhibitor rescue, Id2 HLH domain mutant |
Cellular & molecular immunology |
Medium |
38287103
|
| 2021 |
E2A directly regulates chromatin accessibility at enhancers of memory-related genes in CD8+ T cells; E2A overexpression increases the frequency of memory precursor effector cells and accelerates memory cell formation while decreasing short-lived effectors. |
Single-cell transcriptomics, gene regulatory network analysis, ATAC-seq, E2A ChIP/overexpression |
PNAS |
Medium |
33859041
|
| 2014 |
E2A functions as a transcriptional activator predominantly by inducing open chromatin at target genes in pro-B, small pre-B, and immature B cells; acute protein degradation (dTAG) in vivo identifies E2A as required for Rag1, Rag2, Dntt, Irf4, and Irf8 activation as direct target genes. |
Auxin-inducible/dTAG acute protein degradation in mice, ChIP-seq, ATAC-seq, RNA-seq |
Nature immunology |
High |
39179932
|
| 2022 |
SHMT2 inhibition reduces intracellular glycine/formate, inhibits mTOR, and triggers autophagic degradation of TCF3 in Burkitt lymphoma cells; loss of TCF3 collapses tonic BCR signaling, which TCF3 controls and which is essential for BL cell survival. |
CRISPR-Cas9 screen, SHMT2 knockdown, pharmacological inhibition, mTOR pathway analysis, TCF3 protein level measurement |
Blood |
Medium |
34624079
|
| 2015 |
TCF3 binds the MYC 3' Wnt-responsive element (WRE) to repress MYC in colorectal cancer cells; Wnt/β-catenin activation (via GSK3β inhibition) causes exchange of TCF3 for TCF4/β-catenin complexes at this element, activating MYC expression as quiescent cells re-enter the cell cycle. |
ChIP, shRNA knockdown of TCF3, TCF4, reporter assays, GSK3β inhibitor treatment, cell-cycle analysis |
Cell cycle |
Medium |
25659031
|
| 2013 |
TCF3 is constitutively associated with the Lhcgr promoter in granulosa cells, and dominant-negative TCF abolishes FSH-induced Lhcgr mRNA expression; PKA-phosphorylated β-catenin (Ser552/675) and SF1 occupy the Lhcgr promoter upon FSH treatment. |
Chromatin immunoprecipitation, dominant-negative TCF adenovirus, Lhcgr-luciferase reporter assay, microarray |
Molecular endocrinology |
Medium |
23754802
|
| 2011 |
E2A directly interacts with CD38 regulatory E-box sequences in CLL cells (demonstrated by ChIP); E2A silencing reduces surface CD38 levels, and E2A binding is stronger at the G allele of the CD38 C→G polymorphism, linking E2A genotype-dependently to CD38 transcription. |
ChIP, siRNA knockdown, flow cytometry for CD38 surface expression |
Leukemia |
Medium |
21212793
|
| 2024 |
TCF3 and TCF12 are key regulators of folliculogenesis; motif analysis and loss-of-function studies in oocytes show that TCF3 deficiency impairs activation of key oocyte genes and folliculogenesis, identified through H3K27ac mapping of putative enhancers. |
H3K27ac ChIP-seq in oocytes, TCF3 knockout, gene expression analysis |
Nature cell biology |
Medium |
38839978
|
| 2014 |
Tcf3-expressing cells in the hair follicle bulge are self-renewing multipotent stem cells in adult skin, as demonstrated by lineage tracing; Tcf3-expressing cells also mark persistent stem cells, transient progenitors, and actively differentiating cells in other stratified epithelia (paw skin, tongue, esophagus). |
Tcf3-CreER knock-in mouse, lineage tracing |
Development |
Medium |
25038042
|