Affinage

Showing PALS2VAM-1 is a alias.

PALS2

Protein PALS2 · UniProt Q9NZW5

Length
540 aa
Mass
61.1 kDa
Annotated
2026-06-10
20 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PALS2 (MPP6/VAM-1/p55T) is a basolateral membrane-associated guanylate kinase (MAGUK) scaffolding protein that nucleates multiprotein complexes linking cell-adhesion molecules to the membrane cytoskeleton (PMID:10753959, PMID:17267446). It was first defined by its ability to bind the amino terminus of the Lin-7/Veli family of adaptor proteins through a conserved Lin-7-binding (L27-type) domain, with site-directed mutagenesis identifying the residues required for this interaction, and it localizes to the lateral membrane of polarized epithelial cells (PMID:10753959, PMID:11311936). PALS2 engages the cytoplasmic tails of nectin-like cell-adhesion molecules Necl-2 (SynCAM1) and Necl-1 (SynCAM3) at non-junctional basolateral contact sites, behaving as a conserved adhesion-complex scaffold distinct from the apical polarity machinery — a role mirrored by its Drosophila ortholog Varicose binding Neurexin IV (PMID:12826663, PMID:15741237, PMID:17267446). In peripheral nerve myelin it assembles with Cadm4, Lin7, and band 4.1G (Epb41l2) into a membrane-skeletal complex at Schmidt-Lanterman incisures, and it marks cone but not rod photoreceptors (PMID:35445918, PMID:41396450). Beyond scaffolding, PALS2 forms a complex with GSDME in vascular smooth muscle cells and acts upstream of caspase-3 activation and GSDME cleavage during apoptosis (PMID:38851795). Its specificity among MAGUKs is underscored by its failure to interact with SAP97 despite SAP97 binding the related MAGUKs DLG2 and DLG3 (PMID:12351654).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 2000 High

    Established PALS2 as a distinct MAGUK that selectively recruits the Lin-7 adaptor, defining the molecular basis for a new class of lateral-membrane targeting complexes.

    Evidence Far Western overlay, expression cloning, and site-directed mutagenesis with immunofluorescence in MDCK cells

    PMID:10753959

    Open questions at the time
    • Functional consequence of the Lin-7 interaction not tested
    • No physiological ligand of the PDZ/SH3/GUK module identified
  2. 2001 Medium

    Confirmed the conserved Lin-7/Veli-binding domain and provided domain architecture and tissue-expression context, generalizing the interaction across species homologues.

    Evidence GST pull-down and blot overlay in heterologous transfection, FISH chromosomal mapping

    PMID:11311936

    Open questions at the time
    • Interaction shown in heterologous systems only
    • No endogenous complex demonstrated
  3. 2003 Medium

    Connected PALS2 to a transmembrane adhesion molecule by showing it binds Necl-2 at the basolateral membrane, implicating PALS2 in localizing cell-adhesion proteins.

    Evidence Protein binding assays plus immunofluorescence in mouse gall bladder epithelium

    PMID:12826663

    Open questions at the time
    • Direct vs indirect binding to Necl-2 not fully resolved
    • No loss-of-function test of trafficking role
  4. 2002 Medium

    Defined the binding specificity of PALS2 within the MAGUK family by demonstrating it does not associate with SAP97, distinguishing it from DLG2/DLG3.

    Evidence Co-immunoprecipitation and binding assays in rat brain lysates and MDCK cells

    PMID:12351654

    Open questions at the time
    • Negative result; structural basis of exclusion not defined
  5. 2004 Low

    Placed PALS2 among MAGUKs associated with a potassium channel C-terminal motif, raising a possible channel-anchoring role in brain.

    Evidence Affinity chromatography on Kir2.2 C-terminal matrix with HPLC-ESI-MS/MS and immunoblotting from rat brain

    PMID:15024025

    Open questions at the time
    • Proteomic co-isolation only; no direct PALS2-Kir2.2 interaction or functional follow-up
    • PALS2-specific contribution not isolated from eight co-purifying MAGUKs
  6. 2005 Low

    Extended the adhesion-scaffold role to the nervous system by showing PALS2 binds the neural cell-adhesion molecule Necl-1 at non-junctional contacts.

    Evidence Binding assays with the Necl-1 C-terminal cytoplasmic region

    PMID:15741237

    Open questions at the time
    • Single binding assay without reciprocal or functional validation
    • Endogenous complex not demonstrated
  7. 2007 Medium

    Used the Drosophila ortholog Varicose to establish PALS2 as part of a conserved basolateral cell-adhesion complex separable from the apical polarity complex.

    Evidence Phylogenetic analysis with in vivo localization and genetic loss-of-function in Drosophila

    PMID:17267446

    Open questions at the time
    • Functional parallel inferred from ortholog rather than mammalian loss-of-function
    • Mammalian PALS2 phenotype not tested
  8. 2022 Medium

    Defined a membrane-skeletal complex containing PALS2, Cadm4, Lin7, and band 4.1G at Schmidt-Lanterman incisures of peripheral myelin, anchoring PALS2 in a specific subcellular myelin domain.

    Evidence Mass spectrometry proteomics of purified myelin from Fa2h-/- mouse sciatic nerves

    PMID:35445918

    Open questions at the time
    • Complex composition from co-purification; direct binding not mapped
    • Functional role of the complex in myelin maintenance not established
  9. 2024 Medium

    Revealed a non-scaffolding apoptotic function by showing PALS2 complexes with GSDME and acts upstream of caspase-3 activation and GSDME cleavage in vascular smooth muscle cells.

    Evidence Reciprocal co-immunoprecipitation and siRNA knockdown with Western readout for activated caspase-3 and GSDME fragmentation in VSMCs

    PMID:38851795

    Open questions at the time
    • Mechanism by which PALS2 promotes caspase-3 activation unknown
    • Single cell type and single lab
  10. 2025 Medium

    Established cell-type-specific expression by identifying PALS2 as a pan-cone, rod-absent photoreceptor protein, suggesting a specialized role in cone photoreceptors.

    Evidence FACS-sorted mouse retinal cells with DIA mass spectrometry proteomics

    PMID:41396450

    Open questions at the time
    • Localization only; no functional role in cones tested
    • Binding partners in cones not identified

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PALS2's scaffolding activity mechanistically connects to its apoptotic role with GSDME, and what its function is in cone photoreceptors and myelin incisures, remain unresolved.
  • No structural model of PALS2 in its complexes
  • No mammalian loss-of-function phenotype linking scaffolding to physiology
  • Mechanism linking PALS2 to caspase-3 activation undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 5
Localization
GO:0005886 plasma membrane 3
Pathway
R-HSA-5357801 Programmed Cell Death 1
Complex memberships
Cadm4-Lin7-band 4.1G membrane-skeletal complex (Schmidt-Lanterman incisures)

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 PALS2 was identified as a novel MAGUK protein that binds to the amino terminus of mLin-7 (Lin-7) through a conserved mLin-7 binding domain. Site-directed mutagenesis identified conserved residues crucial for mLin-7 binding. PALS2 localizes to the lateral membrane in MDCK cells and represents a new subfamily of MAGUKs allowing for multiple targeting complexes containing mLin-7. Far Western overlay assay, bacterial expression cloning, site-directed mutagenesis, immunofluorescence localization in MDCK cells The Journal of biological chemistry High 10753959
2001 VAM-1 (PALS2) was shown to bind to Veli-1 (human LIN-7 homologue) through a conserved domain, as demonstrated by GST pull-down experiments and blot overlay assays in heterologous transfection systems. The vam-1 gene encodes a 540 amino acid MAGUK with PDZ, SH3, and GUK domains, localizes to chromosome 7p15-21, and is expressed in testis, brain, and kidney. GST pull-down, blot overlay assay, heterologous transfection, FISH chromosomal localization Biochimica et biophysica acta Medium 11311936
2003 PALS2 was identified as a binding partner of Necl-2 (nectin-like molecule-2/IGSF4/SynCAM1) at the basolateral plasma membrane in epithelial cells. Unlike nectins, Necl-2 did not bind afadin but bound PALS2, a MAGUK family member known to bind Lin-7, suggesting PALS2 involvement in transmembrane protein localization. Protein binding assays (pulldown/interaction assays), immunofluorescence localization in mouse gall bladder epithelium The Journal of biological chemistry Medium 12826663
2002 SAP97 does NOT interact with PALS2, despite interacting with the closely related MAGUKs DLG3 and DLG2. This negative result distinguishes PALS2 from other MAGUK family members in terms of SAP97 complex formation. Co-immunoprecipitation and binding assays in rat brain lysates and MDCK cells The Journal of biological chemistry Medium 12351654
2004 PALS2 was identified as one of eight MAGUK family proteins associated with the Kir2.2 potassium channel C-terminal PDZ binding motif in rat brain, suggesting PALS2 participates in channel trafficking/anchoring protein complexes. Affinity chromatography from rat brain detergent extracts using Kir2.2 C-terminal matrix, multidimensional HPLC-ESI-MS/MS, immunoblotting The Journal of biological chemistry Low 15024025
2005 The C-terminal cytoplasmic region of Necl-1/TSLL1/SynCAM3 was shown to bind PALS2 (along with Dlg3 and CASK), identifying PALS2 as a binding partner for this neural-tissue-specific cell adhesion molecule at non-junctional contact sites. Binding assays (pulldown/interaction assays) with Necl-1 C-terminal cytoplasmic region Journal of cell science Low 15741237
2007 Phylogenetic analysis established that Drosophila Varicose (Vari) defines a new MAGUK subgroup that includes mammalian PALS2. Both Vari and PALS2 are basolateral proteins, and the interaction of Vari with Neurexin IV parallels PALS2 interaction with Necl-2, indicating that PALS2 is part of a conserved basolateral cell-adhesion complex distinct from the polarity complex. Phylogenetic analysis, in vivo localization studies in Drosophila, genetic loss-of-function analysis Development (Cambridge, England) Medium 17267446
2022 PALS2/MPP6 was identified by mass spectrometry-based proteomics as part of a complex with Cadm4, Lin7, and band 4.1G (Epb41l2) at Schmidt-Lanterman incisures (SLIs) in peripheral nerve myelin. This complex was increased in Fa2h-deficient mouse sciatic nerves at 17 months of age. Mass spectrometry-based proteomics of purified myelin from sciatic nerves of Fa2h-/- mice Molecular neurobiology Medium 35445918
2024 PALS2 was shown to form a complex with GSDME by co-immunoprecipitation in vascular smooth muscle cells (VSMCs). Knockdown of PALS2 attenuated activated caspase-3 and GSDME fragmentation, placing PALS2 upstream of caspase-3 activation and GSDME cleavage in VSMC apoptosis. Co-immunoprecipitation (protein co-IP), siRNA knockdown with Western blot readout for activated caspase-3 and GSDME fragmentation in VSMCs Cell death & disease Medium 38851795
2025 PALS2/MPP6 was identified as a pan-cone photoreceptor protein absent in rod photoreceptors by quantitative DIA mass spectrometry proteomics of FACS-sorted mouse retinal cells, establishing cone-specific subcellular localization. Fluorescence-activated cell sorting of rod and cone photoreceptors, data-independent acquisition (DIA) mass spectrometry proteomics Investigative ophthalmology & visual science Medium 41396450

Source papers

Stage 0 corpus · 20 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 Implications of nectin-like molecule-2/IGSF4/RA175/SgIGSF/TSLC1/SynCAM1 in cell-cell adhesion and transmembrane protein localization in epithelial cells. The Journal of biological chemistry 180 12826663
2004 Protein trafficking and anchoring complexes revealed by proteomic analysis of inward rectifier potassium channel (Kir2.x)-associated proteins. The Journal of biological chemistry 172 15024025
2000 Molecular cloning and characterization of Pals, proteins associated with mLin-7. The Journal of biological chemistry 147 10753959
2005 Nectin-like molecule-1/TSLL1/SynCAM3: a neural tissue-specific immunoglobulin-like cell-cell adhesion molecule localizing at non-junctional contact sites of presynaptic nerve terminals, axons and glia cell processes. Journal of cell science 110 15741237
2004 Identification and characterization of human MPP7 gene and mouse Mpp7 gene in silico. International journal of molecular medicine 80 14719143
2007 Drosophila Varicose, a member of a new subgroup of basolateral MAGUKs, is required for septate junctions and tracheal morphogenesis. Development (Cambridge, England) 77 17267446
1983 Construction of a shuttle vector for the filamentous fungus Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America 55 6302667
2002 Identification of multiple binding partners for the amino-terminal domain of synapse-associated protein 97. The Journal of biological chemistry 53 12351654
2001 VAM-1: a new member of the MAGUK family binds to human Veli-1 through a conserved domain. Biochimica et biophysica acta 37 11311936
2008 Varicose: a MAGUK required for the maturation and function of Drosophila septate junctions. BMC developmental biology 25 18847477
2021 Characterization and Genomic Analysis of PALS2, a Novel Staphylococcus Jumbo Bacteriophage. Frontiers in microbiology 24 33763042
1984 Characterization of deletion derivatives of an autonomously replicating Neurospora plasmid. Nucleic acids research 24 6236427
1995 Identification of a unique costimulatory activity for murine T helper 1 T cell clones. Journal of immunology (Baltimore, Md. : 1950) 12 7536772
2021 Identification of a Novel Metallo-β-Lactamase, VAM-1, in a Foodborne Vibrio alginolyticus Isolate from China. Antimicrobial agents and chemotherapy 10 34424042
2024 Genetic influence on vascular smooth muscle cell apoptosis. Cell death & disease 6 38851795
2022 Age-Dependent Increase in Schmidt-Lanterman Incisures and a Cadm4-Associated Membrane Skeletal Complex in Fatty Acid 2-hydroxylase Deficient Mice: a Mouse Model of Spastic Paraplegia SPG35. Molecular neurobiology 3 35445918
2025 Transcriptional Signatures of Aerobic Exercise-Induced Muscle Adaptations in Humans. Journal of functional morphology and kinesiology 2 40700217
2026 Identification of hub targets involved in carotid atherosclerosis through bioinformatics and machine learning approaches. BMC cardiovascular disorders 0 41851623
2025 The chromatin remodeler LET-418/Mi-2 regulates the intracellular pathogen response in the C. elegans intestine. BMC genomics 0 41120898
2025 A Mouse Photoreceptor Proteome Resource Identifies PALS2/MPP6 as a Novel Pan-Cone Photoreceptor Marker. Investigative ophthalmology & visual science 0 41396450

Missed literature

Know a paper Affinage missed for PALS2? Flag it for the maintainers and the community.

No submissions yet.