Affinage

TUBGCP3

Gamma-tubulin complex component 3 · UniProt Q96CW5

Round 2 corrected
Length
907 aa
Mass
103.6 kDa
Annotated
2026-04-28
45 papers in source corpus 16 papers cited in narrative 16 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TUBGCP3 (GCP3) is an essential structural subunit of the γ-tubulin small complex (γ-TuSC) and the γ-tubulin ring complex (γ-TuRC), where it directly binds γ-tubulin and is required for microtubule nucleation at centrosomes (PMID:8670895, PMID:9566969, PMID:11694571). Within the γ-TuRC, GCP3 serves as the direct docking site for the conserved nucleation activator MOZART1/MZT1 via its N-terminal region and acts as a bridging scaffold that connects NEDD1 to the complex lumen (PMID:24006493). Loss of GCP3 causes monopolar spindle formation, M-phase arrest, and impaired cell proliferation across organisms from yeast to zebrafish, establishing it as a critical mitotic regulator (PMID:31178691, PMID:33482282). The protein is functionally conserved from yeast (Spc98p) to humans, and its stoichiometry within the γ-TuSC—together with GCP2 and two γ-tubulin molecules—has been defined by native complex purification (PMID:9384578, PMID:23886939).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 1996 High

    The fundamental question of how γ-tubulin function is supported at the spindle pole body was answered by identifying Spc98p (GCP3 ortholog) as a direct physical partner of γ-tubulin, establishing the first known accessory subunit of a γ-tubulin complex.

    Evidence Dosage suppressor screen, yeast two-hybrid, co-immunoprecipitation, and synthetic lethality in S. cerevisiae

    PMID:8670895

    Open questions at the time
    • Mammalian ortholog not yet identified
    • Stoichiometry of the complex unknown
    • Mechanism by which the complex nucleates microtubules unresolved
  2. 1997 High

    The composition and stoichiometry of the γ-tubulin complex were defined: Spc98p, Spc97p, and two or more Tub4p molecules form a discrete unit that docks to the SPB via the Spc110p N-terminal domain, resolving how the complex is tethered to the nucleation site.

    Evidence Native complex purification and co-immunoprecipitation with domain-mapping in yeast

    PMID:9384578

    Open questions at the time
    • Whether the same stoichiometry applies in metazoan cells unknown
    • The larger ring complex not yet discovered
  3. 1998 High

    Identification of human GCP3 and demonstration that it is functionally required for centrosomal microtubule nucleation established evolutionary conservation and provided the first direct functional evidence for the protein in mammalian cells.

    Evidence Co-immunoprecipitation, sucrose gradient sedimentation, antibody inhibition of nucleation on isolated centrosomes and in microinjected cells

    PMID:9566967 PMID:9566969

    Open questions at the time
    • Structure of the human γ-tubulin complex unresolved
    • Whether GCP3 participates in a larger complex beyond the γ-TuSC unknown
  4. 1998 High

    Spc98p was shown to contain an essential NLS directing nuclear import of the assembled complex and to undergo cell-cycle-dependent phosphorylation at the nuclear SPB face, linking GCP3 to cell-cycle regulation of nucleation.

    Evidence NLS mutagenesis, cell fractionation, phosphorylation analysis, and mps1 genetic epistasis in yeast

    PMID:9529377

    Open questions at the time
    • Whether phosphorylation directly regulates nucleation activity unclear
    • Kinase–substrate relationship with Mps1 not biochemically confirmed
  5. 2001 High

    Mass spectrometry of the purified human γ-TuRC confirmed GCP3 as a core subunit of a larger ~25 nm ring complex (with GCP2–GCP6 and γ-tubulin) capable of nucleating microtubules in vitro, answering the question of whether a metazoan ring complex exists beyond the γ-TuSC.

    Evidence Native complex purification, mass spectrometry, EM, in vitro nucleation assay

    PMID:11694571

    Open questions at the time
    • High-resolution structure of the ring complex lacking
    • How GCP3 is arranged within the ring unknown
  6. 2002 High

    Discovery that CG-NAP and kendrin anchor the γ-TuRC at the centrosome by binding GCP2/GCP3 identified the first centrosomal receptors for the complex, resolving the question of how the nucleation machinery is physically tethered.

    Evidence Yeast two-hybrid, co-immunoprecipitation, antibody inhibition of centrosomal nucleation

    PMID:12221128

    Open questions at the time
    • Relative contributions of CG-NAP vs. kendrin to GCP3-mediated tethering not dissected
    • Whether additional tethering mechanisms exist unknown
  7. 2007 Medium

    CDK5RAP2 was identified as a γ-TuRC attachment factor at centrosomes whose perturbation delocalizes γ-tubulin without disrupting complex assembly, establishing a separation between complex formation and centrosomal recruitment.

    Evidence RNAi, overexpression, co-immunoprecipitation, immunofluorescence in human cells

    PMID:17959831

    Open questions at the time
    • GCP3 not directly manipulated in these experiments
    • Direct binding site on GCP3 not mapped
  8. 2013 High

    MOZART1/MZT1 was shown to directly bind the N-terminal region of GCP3, identifying GCP3 as the specific docking subunit for this conserved nucleation activator and answering the question of how MZT1 is recruited to the γ-tubulin complex.

    Evidence Yeast two-hybrid, biophysical assays with recombinant proteins, conditional depletion in fission yeast

    PMID:24006493

    Open questions at the time
    • Structural basis of the MZT1–GCP3 interface not resolved at atomic level at this time
    • Whether MZT1 binding modulates GCP3 conformation unknown
  9. 2013 High

    Cross-species complementation demonstrated that human GCP3 can fully replace fission yeast Alp6, proving structural and functional conservation and revealing that GCP2 and GCP3 have non-equivalent roles within the γ-TuSC.

    Evidence Genetic complementation, sucrose gradient sedimentation, chimeric protein analysis in fission yeast

    PMID:23886939

    Open questions at the time
    • Molecular determinants underlying GCP3's distinct role vs. GCP2 not identified
    • N-terminal domain swap experiments not performed for GCP3
  10. 2019 High

    In vivo loss of Tubgcp3 in zebrafish established that GCP3 is essential for bipolar spindle formation and retinal progenitor cell proliferation, translating cell-biological knowledge to a vertebrate developmental context.

    Evidence CRISPR/Cas9 knockout in zebrafish with immunofluorescence, cell cycle, and apoptosis analysis

    PMID:31178691

    Open questions at the time
    • Whether partial loss of function produces milder or tissue-specific phenotypes unknown
    • No human disease association established
  11. 2024 High

    Cryo-EM structures revealed that GCP3, in subcomplexes with MZT1, serves as a bridging scaffold connecting NEDD1 to the γ-TuRC lumen, providing the first high-resolution view of GCP3's architectural role and explaining how NEDD1 is recruited to the complex.

    Evidence Cryo-EM structure, AlphaFold modeling, pull-down mutagenesis (preprint)

    PMID:bio_10.1101_2024.11.05.622067

    Open questions at the time
    • Preprint; peer-reviewed validation pending
    • Whether NEDD1–GCP3 interaction is regulated by post-translational modifications unknown
    • Functional consequences of disrupting the GCP3–NEDD1 bridge on nucleation not tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include whether post-translational modifications of GCP3 directly regulate nucleation activity, whether GCP3 mutations cause human Mendelian disease, and how GCP3 contributes to nucleation at non-centrosomal MTOCs in differentiated tissues.
  • No human genetic disease linked to TUBGCP3 mutations reported
  • Regulation of GCP3 by phosphorylation or other modifications in mammalian cells unexplored
  • Role at acentrosomal MTOCs (e.g. Golgi, nuclear envelope) not directly tested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 4 GO:0008092 cytoskeletal protein binding 3
Localization
GO:0005815 microtubule organizing center 4 GO:0005829 cytosol 2 GO:0005730 nucleolus 1
Pathway
R-HSA-1640170 Cell Cycle 3 R-HSA-1852241 Organelle biogenesis and maintenance 3
Complex memberships
γ-tubulin ring complex (γ-TuRC)γ-tubulin small complex (γ-TuSC)

Evidence

Reading pass · 16 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1996 Spc98p (yeast ortholog of GCP3) was identified as a dosage-dependent suppressor of the conditional lethal tub4-1 (γ-tubulin) allele. Genetic and biochemical evidence (two-hybrid binding, co-immunoprecipitation, synthetic lethality) demonstrated a direct interaction between Tub4p (γ-tubulin) and Spc98p at the spindle pole body, and overexpression of Spc98p caused cell cycle arrest with defective microtubule structures, rescued by co-overexpression of TUB4. Dosage suppressor screen, yeast two-hybrid, co-immunoprecipitation, genetic epistasis The EMBO journal High 8670895
1997 Purification of the yeast Tub4p complex (γ-tubulin complex) showed it contains one molecule each of Spc98p and Spc97p and two or more molecules of Tub4p with no other proteins. Genetic and biochemical data established that Spc98p and Spc97p mediate binding of the Tub4p complex to the spindle pole body (SPB) via interaction with the N-terminal domain of the SPB component Spc110p. Protein complex purification, co-immunoprecipitation, genetic interaction analysis The EMBO journal High 9384578
1998 Human GCP3 (hGCP3), the mammalian homologue of yeast Spc98p, was identified as a component of the cytoplasmic γ-tubulin complex. GCP3 colocalizes with γ-tubulin at the centrosome, cosediments with γ-tubulin in sucrose gradients, and coimmunoprecipitates with γ-tubulin. GCP3 and GCP2 are not only related to their respective yeast homologues but also to each other, defining a conserved γ-tubulin complex from yeast to mammals. Epitope-tag immunoprecipitation, sucrose gradient sedimentation, co-localization imaging, sequence analysis The Journal of cell biology High 9566967
1998 Human Spc98p (GCP3) localizes to the centrosome and is present in cytosolic γ-tubulin-containing complexes as shown by sucrose gradient sedimentation and immunoprecipitation. Affinity-purified antibodies against GCP3 inhibit microtubule nucleation on isolated centrosomes and in microinjected cells, demonstrating that GCP3 is functionally required for microtubule nucleation. Sucrose gradient sedimentation, immunoprecipitation, antibody inhibition of microtubule nucleation on isolated centrosomes and in microinjected cells The Journal of cell biology High 9566969
1998 Spc98p (GCP3 ortholog) in the yeast Tub4p complex contains an essential nuclear localization sequence that directs import of the assembled complex into the nucleus for binding to the nuclear face of the SPB. Spc98p is phosphorylated specifically at the nuclear (but not cytoplasmic) side of the SPB in a cell cycle-dependent manner, occurring after SPB duplication. This phosphorylation is stimulated by the mitotic checkpoint and appears to involve the kinase Mps1p. NLS mutagenesis, cell fractionation, phosphorylation analysis, genetic analysis with mps1 mutants, mitotic checkpoint activation Molecular biology of the cell High 9529377
2001 Mass spectrometry analysis of the purified human γ-tubulin ring complex confirmed the presence of GCP3 (along with γ-tubulin, GCP2, GCP4, GCP5, and GCP6) as a core structural component. The human γ-TuRC forms ~25 nm rings and can nucleate microtubule polymerization in vitro. GCP2–GCP6 share five conserved sequence regions defining a novel protein superfamily. Native complex purification, mass spectrometry, electron microscopy, in vitro microtubule nucleation assay Molecular biology of the cell High 11694571
2002 The centrosomal proteins CG-NAP and kendrin anchor the γ-tubulin ring complex (γ-TuRC) at the centrosome by binding GCP2 and/or GCP3 via their N-terminal regions. Endogenous CG-NAP and kendrin coimmunoprecipitate with GCP2 and γ-tubulin in vivo. Antibody pretreatment of isolated centrosomes against CG-NAP or kendrin inhibited microtubule nucleation, with combined antibodies producing stronger inhibition. Yeast two-hybrid, co-immunoprecipitation, antibody inhibition of microtubule nucleation from isolated centrosomes Molecular biology of the cell High 12221128
2007 CDK5RAP2 associates with the γ-TuRC (containing GCP3 among other subunits) via a conserved short sequence and is required for γ-TuRC attachment to the centrosome. Perturbing CDK5RAP2 function delocalized γ-tubulin from centrosomes and inhibited centrosomal microtubule nucleation, leading to disorganized interphase arrays and anastral spindles, without affecting γ-TuRC assembly. RNAi knockdown, overexpression, co-immunoprecipitation, immunofluorescence, microtubule nucleation assay Molecular biology of the cell Medium 17959831
2010 CDK5RAP2 stimulates microtubule nucleation by purified γ-TuRC (containing GCP3) in vitro via its γ-TuRC-mediated nucleation activator (γ-TuNA) domain. γ-TuRC bound to γ-TuNA contains GCP2–GCP6 (including GCP3), NME7, FAM128A/B, and actin. RNAi depletion of CDK5RAP2 impairs centrosomal and acentrosomal microtubule nucleation without affecting γ-TuRC assembly. In vitro microtubule nucleation with purified γ-TuRC, RNAi, co-immunoprecipitation, mass spectrometry of complex composition The Journal of cell biology Medium 21135143
2010 Systematic tandem-affinity purification–mass spectrometry (MitoCheck) identified GCP3 as a confirmed subunit of the human γ-tubulin ring complex (γ-TuRC), alongside other GCPs, and established the γ-TuRC as essential for spindle assembly and chromosome segregation. TAP-MS, BAC transgene tagging, protein localization Science Medium 20360068
2013 Fission yeast MOZART1 homologue Mzt1/Tam4 directly interacts with the N-terminal region of GCP3 (Alp6 in fission yeast), as shown by yeast two-hybrid and biophysical methods using recombinant proteins. Depletion of Mzt1/Tam4 causes aberrant microtubule structures and cytokinesis defects, and the protein co-immunoprecipitates with γ-tubulin, placing GCP3 as the direct binding partner for MOZART1 within the γ-tubulin complex. Yeast two-hybrid, biophysical interaction assays with recombinant proteins, co-immunoprecipitation, conditional depletion Molecular biology of the cell High 24006493
2013 Cross-species complementation in fission yeast showed that human GCP3 function is fully conserved with fission yeast Alp6 (GCP3 ortholog): human GCP3 assembles into the >2000 kDa fission yeast γ-TuRC and genetically replaces alp6. A chimeric Alp4-GCP2 protein revealed that the GCP2 N-terminal domain limits its ability to compete with Alp4, while GCP3 showed no such limitation, indicating structurally distinct roles for GCP2 and GCP3 within the γ-TuSC. Cross-species genetic complementation, sucrose gradient sedimentation, chimeric protein analysis Journal of cell science High 23886939
2015 GCP3 was found to localize to nucleoli in glioblastoma cells (as well as centrosomes) and forms complexes with γ-tubulin in the nucleolus, as confirmed by reciprocal immunoprecipitation and immunoelectron microscopy. GCP3 depletion caused accumulation of cells in G2/M and mitotic delay. Overexpression of GCP2 antagonized the inhibitory effect of C53 (CDK5RAP3) on DNA damage G2/M checkpoint activity. Reciprocal co-immunoprecipitation, immunoelectron microscopy, RNAi depletion with cell cycle analysis (FACS) Journal of neuropathology and experimental neurology Medium 26079448
2019 Zebrafish tubgcp3 mutants generated by CRISPR/Cas9 exhibit a small-eye phenotype due to cell cycle arrest of retinal progenitor cells (RPCs) in mitotic (M) phase. Arrested RPCs showed aberrant monopolar spindles, abnormally distributed centrioles and γ-tubulin, and subsequently underwent apoptosis, establishing that Tubgcp3 is required in vivo for γ-TuSC/γ-TuRC-mediated bipolar spindle formation and retinal progenitor proliferation. CRISPR/Cas9 knockout, immunofluorescence (spindle morphology, centriole/γ-tubulin distribution), cell cycle analysis, apoptosis assay Frontiers in molecular neuroscience High 31178691
2021 RNAi knockdown of Tubgcp3 in planarian Dugesia japonica reduces cell divisions and causes loss of mature epidermal cells, tissue homeostasis defects, and regeneration failure. This established that Tubgcp3 functions as a mitotic regulator required for maintenance of the epidermal stem cell lineage in vivo. RNAi knockdown, cell division quantification, lineage marker analysis, regeneration assay Gene Medium 33482282
2024 Cryo-EM structures of NEDD1 bound to the human γ-TuRC reveal that the C-terminus of NEDD1 forms a tetrameric α-helical assembly anchored to GCP4, 5, and 6 via protein modules consisting of MZT1 & GCP3 subcomplexes. GCP3 thus acts as a bridging scaffold connecting NEDD1 to the γ-TuRC lumen. Mutational validation confirmed NEDD1 residues required for γ-tubulin pull-down. NEDD1 binding does not induce conformational changes in the γ-TuRC but is compatible with the CDK5RAP2-bound 'open' conformation. Cryo-electron microscopy, AlphaFold structural modeling, pull-down mutagenesis validation bioRxivpreprint High bio_10.1101_2024.11.05.622067

Source papers

Stage 0 corpus · 45 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature 3411 32353859
2012 Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 1718 22658674
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2009 Defining the human deubiquitinating enzyme interaction landscape. Cell 1282 19615732
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2020 Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.) 564 33060197
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2015 A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell 433 26638075
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2010 Systematic analysis of human protein complexes identifies chromosome segregation proteins. Science (New York, N.Y.) 421 20360068
2015 Panorama of ancient metazoan macromolecular complexes. Nature 407 26344197
2010 Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways. Diabetes 361 20858683
2021 A proximity-dependent biotinylation map of a human cell. Nature 339 34079125
2011 Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. The EMBO journal 265 21399614
2011 A directed protein interaction network for investigating intracellular signal transduction. Science signaling 258 21900206
2010 CDK5RAP2 stimulates microtubule nucleation by the gamma-tubulin ring complex. The Journal of cell biology 238 21135143
2007 CDK5RAP2 is a pericentriolar protein that functions in centrosomal attachment of the gamma-tubulin ring complex. Molecular biology of the cell 233 17959831
2018 Mapping the Genetic Landscape of Human Cells. Cell 225 30033366
2018 An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations. Nature communications 201 29568061
1997 Spc98p and Spc97p of the yeast gamma-tubulin complex mediate binding to the spindle pole body via their interaction with Spc110p. The EMBO journal 201 9384578
2015 A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. eLife 198 26673895
2002 Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex. Molecular biology of the cell 190 12221128
1998 The mammalian gamma-tubulin complex contains homologues of the yeast spindle pole body components spc97p and spc98p. The Journal of cell biology 176 9566967
2001 GCP5 and GCP6: two new members of the human gamma-tubulin complex. Molecular biology of the cell 153 11694571
1996 The spindle pole body component Spc98p interacts with the gamma-tubulin-like Tub4p of Saccharomyces cerevisiae at the sites of microtubule attachment. The EMBO journal 152 8670895
2009 Ubiquitin-mediated proteolysis of HuR by heat shock. The EMBO journal 142 19322201
1994 Recruitment of antigenic gamma-tubulin during mitosis in animal cells: presence of gamma-tubulin in the mitotic spindle. Journal of cell science 125 7876350
2019 The p300/YY1/miR-500a-5p/HDAC2 signalling axis regulates cell proliferation in human colorectal cancer. Nature communications 115 30737378
1998 Characterization of the human homologue of the yeast spc98p and its association with gamma-tubulin. The Journal of cell biology 114 9566969
2019 Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity. Genes & development 110 31753913
2002 The plant Spc98p homologue colocalizes with gamma-tubulin at microtubule nucleation sites and is required for microtubule nucleation. Journal of cell science 97 12006626
2012 The GCP3-interacting proteins GIP1 and GIP2 are required for γ-tubulin complex protein localization, spindle integrity, and chromosomal stability. The Plant cell 83 22427335
1998 Spc98p directs the yeast gamma-tubulin complex into the nucleus and is subject to cell cycle-dependent phosphorylation on the nuclear side of the spindle pole body. Molecular biology of the cell 74 9529377
2012 Arabidopsis GCP3-interacting protein 1/MOZART 1 is an integral component of the γ-tubulin-containing microtubule nucleating complex. The Plant journal : for cell and molecular biology 67 22404201
2007 Arabidopsis GCP2 and GCP3 are part of a soluble gamma-tubulin complex and have nuclear envelope targeting domains. The Plant journal : for cell and molecular biology 60 17714428
2013 Mzt1/Tam4, a fission yeast MOZART1 homologue, is an essential component of the γ-tubulin complex and directly interacts with GCP3(Alp6). Molecular biology of the cell 38 24006493
2015 Overexpression and Nucleolar Localization of γ-Tubulin Small Complex Proteins GCP2 and GCP3 in Glioblastoma. Journal of neuropathology and experimental neurology 27 26079448
2019 Tubgcp3 Is Required for Retinal Progenitor Cell Proliferation During Zebrafish Development. Frontiers in molecular neuroscience 14 31178691
2021 Tubgcp3 is a mitotic regulator of planarian epidermal differentiation. Gene 6 33482282
2013 Functional replacement of fission yeast γ-tubulin small complex proteins Alp4 and Alp6 by human GCP2 and GCP3. Journal of cell science 5 23886939
2025 Microtubule nucleation: How the NEDD1:MZT1:GCP3 trio captures the γ-TuRC. The Journal of cell biology 0 40663060