Affinage

TNR

Tenascin-R · UniProt Q92752

Length
1358 aa
Mass
149.6 kDa
Annotated
2026-06-10
13 papers in source corpus 5 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Tenascin-R (TNR) is a CNS extracellular matrix glycoprotein required for normal neurodevelopment, as biallelic loss-of-function and missense variants cause a nonprogressive autosomal recessive disorder with spasticity in humans (PMID:32099069) and an analogous exercise-induced paroxysmal dystonia-ataxia syndrome in a canine model carrying a truncating frameshift variant (PMID:37023257). Within perineuronal nets, TNR forms a complex with receptor protein tyrosine phosphatase zeta (RPTPζ) that is anchored to the neuronal surface by the GPI-linked protein contactin-1 (Cntn1), and disrupting Cntn1 binding impairs net structure. TNR also constrains axonal plasticity: it inhibits neurite outgrowth and axonal regeneration after spinal cord injury through a RhoA-dependent mechanism, and antibody antagonism reduces RhoA activation and improves functional recovery (PMID:22902990). TNR is delivered to the matrix through Piccolo-dependent secretion from astrocytes, which supports synaptogenesis and shapes neuronal network activity, and it negatively regulates dopamine receptor D2 (DRD2) expression (PMID:41233622, PMID:41091226).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2012 Medium

    Established that TNR is not merely a structural matrix component but an active inhibitor of axonal regeneration, defining a signaling mechanism through which it limits CNS plasticity.

    Evidence In vitro neurite outgrowth on TN-R substrate with antagonist antibody plus in vivo rat spinal cord hemisection and RhoA activation assay

    PMID:22902990

    Open questions at the time
    • Receptor mediating the RhoA-dependent inhibitory signal not identified
    • Single lab, single injury model
  2. 2020 Medium

    Connected TNR loss directly to human disease, establishing that the gene is essential for normal CNS development.

    Evidence Exome sequencing and matchmaking across 13 individuals from 8 families with biallelic variants; clinical phenotyping

    PMID:32099069

    Open questions at the time
    • No functional reconstitution linking specific variants to molecular defect
    • Mechanism connecting perineuronal net loss to spasticity unresolved
  3. 2023 Medium

    Demonstrated that TNR loss-of-function causes movement disorders across species, supporting a conserved requirement for TNR in motor circuit function.

    Evidence Whole genome sequencing and genotype-phenotype segregation in 4 affected and 70 unaffected Weimaraner dogs

    PMID:37023257

    Open questions at the time
    • No molecular mechanism study
    • Cellular basis of paroxysmal phenotype unknown
  4. 2024 Medium

    Resolved how TNR is physically organized and retained within perineuronal nets, identifying its binding partners and surface anchor.

    Evidence Biochemical fractionation, structural analysis, and cell-surface binding assays with Cntn1 manipulation in a PNN context (preprint)

    Open questions at the time
    • Preprint, single lab
    • Stoichiometry and structural detail of the TNR–RPTPζ–Cntn1 assembly not fully defined
  5. 2025 Medium

    Identified the cellular source and secretory route of matrix TNR, linking astrocytic Piccolo-dependent secretion to synaptogenesis and circuit activity.

    Evidence RNA-seq, immunostaining, astrocyte-conditioned media rescue, Pclo gt/gt rat, co-culture synapse density, and electrophysiology (preprint)

    Open questions at the time
    • Preprint, single lab
    • Direct mechanism by which secreted TNR promotes synapse formation not defined
  6. 2025 Low

    Extended the disease spectrum to missense variants and proposed a regulatory link between TNR and dopaminergic signaling via DRD2.

    Evidence Exome/Sanger sequencing, Western blot and immunofluorescence, in vitro TNR knockdown with DRD2 readout, BXD systems genetics

    PMID:41091226 PMID:41233622

    Open questions at the time
    • Single molecular readout (DRD2 expression) without mechanistic reconstitution
    • Directness of TNR–DRD2 relationship unestablished
    • Reduced penetrance not mechanistically explained

Open questions

Synthesis pass · forward-looking unresolved questions
  • The receptor and downstream signaling pathway by which TNR transduces its effects on axon growth, synaptogenesis, and DRD2 regulation remain only partially defined.
  • No unified mechanism linking PNN assembly, RhoA-dependent growth inhibition, and dopaminergic regulation
  • No structural model of human disease variants

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 1
Localization
GO:0005576 extracellular region 1 GO:0031012 extracellular matrix 1
Pathway
R-HSA-1266738 Developmental Biology 2 R-HSA-1474244 Extracellular matrix organization 1
Partners
Complex memberships
perineuronal net

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2020 Loss-of-function (biallelic) variants in TNR (Tenascin-R) cause a nonprogressive autosomal recessive neurodevelopmental disorder with spasticity and transient opisthotonus in humans, establishing TNR as essential for normal CNS development, consistent with its known role in perineuronal net formation around interneurons. Exome sequencing and matchmaking in 13 individuals from 8 unrelated families with biallelic TNR variants (homozygous loss-of-function and missense); clinical phenotyping Genetics in medicine : official journal of the American College of Medical Genetics Medium 32099069
2012 Tenascin-R (TN-R) inhibits axonal regeneration after spinal cord injury; antagonist polyclonal antibody against TN-R promoted neurite outgrowth on TN-R substrate in vitro and, when administered in vivo, decreased RhoA activation and improved functional recovery after corticospinal tract transection in rats. In vitro neurite outgrowth assay on TN-R substrate with antibody antagonist; in vivo rat spinal cord dorsal hemisection model with local antibody administration; RhoA activation assay Neuroscience letters Medium 22902990
2023 A TNR frameshift variant (c.831dupC, predicted to truncate >75% of the open reading frame) in Weimaraner dogs is associated with an exercise-induced paroxysmal dystonia-ataxia syndrome, demonstrating that loss of Tenascin-R function causes movement disorders in a canine model. Whole genome sequencing; identification of private homozygous frameshift variant in TNR; genotype-phenotype association in 4 affected and 70 unaffected dogs Movement disorders : official journal of the Movement Disorder Society Medium 37023257
2025 Biallelic TNR missense variants cause neurodevelopmental disorders with variable expressivity and reduced penetrance; TNR knockdown in vitro enhanced expression of dopamine receptor D2 (DRD2), indicating a negative regulatory relationship between TNR and DRD2 in the dopaminergic synaptic pathway. Exome and Sanger sequencing; Western blot and immunofluorescence; in vitro TNR knockdown with DRD2 expression measurement; systems genetics (BXD strains, co-expression analysis) Journal of human genetics / Neurotoxicity research Low 41091226 41233622
2024 Tenascin-R (Tnr) forms a complex with receptor protein tyrosine phosphatase zeta (RPTPζ) within perineuronal nets (PNNs), and this complex is bound to the neuronal cell surface by the GPI-linked protein contactin-1 (Cntn1); disruption of Cntn1 binding impairs PNN structure. Biochemical fractionation, structural analysis, and functional cell-surface binding assays in a perineuronal net context; PNN structural assessment upon Cntn1 manipulation bioRxivpreprint Medium
2025 Piccolo, via an astrocyte-specific isoform localizing at the Golgi, regulates secretion of Tenascin-R (TNR) from astrocytes; loss of Piccolo (Pclo gt/gt) leads to altered extracellular TNR levels from astrocytes, which correlates with impaired synaptogenesis and altered neuronal network activity. RNA-sequencing, immunohistochemistry/immunocytochemistry, astrocyte-conditioned media experiments, Pclo gt/gt rat model, co-culture synapse density assays, electrophysiology (mEPSCs, mIPSCs) bioRxivpreprint Medium
2025 Tenascin-R expression in cortical neurons is suppressed by hydrocortisone at 7 days in vitro (DIV) but not at 14 DIV; glucocorticoid receptor antagonism elevated TnR protein levels at 14 DIV, demonstrating developmental stage-dependent glucocorticoid regulation of TNR expression. Cultured mouse cortical neurons; mRNA and protein level measurements after hydrocortisone treatment; glucocorticoid receptor antagonism experiments bioRxivpreprint Low

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 Development of a new outcome prediction model in carcinoma invading the bladder based on preoperative serum C-reactive protein and standard pathological risk factors: the TNR-C score. BJU international 82 21507193
2020 Loss of TNR causes a nonprogressive neurodevelopmental disorder with spasticity and transient opisthotonus. Genetics in medicine : official journal of the American College of Medical Genetics 25 32099069
1998 Circadian rhythm of the soluble p75 tumor necrosis factor (sTNF-R75) receptor in humans--a possible explanation for the circadian kinetics of TNR-alpha effects. International immunology 18 9786439
2014 CFTR and TNR-CFTR expression and function in the kidney. Biophysical reviews 16 28510183
2018 A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene. Translational psychiatry 14 30563984
2012 Passive immunization with tenascin-R (TN-R) polyclonal antibody promotes axonal regeneration and functional recovery after spinal cord injury in rats. Neuroscience letters 10 22902990
2016 A dynamic trinucleotide repeat (TNR) expansion in the DMD gene. Molecular and cellular probes 9 27417533
2008 Small nuclear RNAs U11 and U12 modulate expression of TNR-CFTR mRNA in mammalian kidneys. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 5 18769035
2023 A TNR Frameshift Variant in Weimaraner Dogs with an Exercise-Induced Paroxysmal Movement Disorder. Movement disorders : official journal of the Movement Disorder Society 4 37023257
2010 The hypertonic environment differentially regulates wild-type CFTR and TNR-CFTR chloride channels. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 3 21063095
2004 TNR/11q#1 trinucleotide (GCC)n repeat alleles and predisposition to acute and chronic leukemia. Annals of human genetics 1 15225161
2025 Identification of TNR as a Potential Hippocampal Biomarker of Novelty Seeking Behavior with Integrated Quantitative Proteomics and Systems Genetics Approaches. Neurotoxicity research 0 41091226
2025 Biallelic variants in TNR cause neurodevelopmental disorders with variable expressivity. Journal of human genetics 0 41233622

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