Affinage

TMED3

Transmembrane emp24 domain-containing protein 3 · UniProt Q9Y3Q3

Length
217 aa
Mass
24.8 kDa
Annotated
2026-06-10
19 papers in source corpus 15 papers cited in narrative 15 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TMED3 is a p24-family endoplasmic reticulum-to-Golgi cargo protein that recognizes ER core-glycosylated transmembrane cargos and, as a subunit of a heteromeric TMED2/3/9/10 complex, mediates ER stress-associated unconventional (Golgi-independent) secretion of transmembrane proteins including CFTR, pendrin, and SARS-CoV-2 Spike; co-expression of all four TMEDs improves this secretion while individual silencing reduces it (PMID:35748162). Beyond this trafficking role, TMED3 acts as a context-dependent modulator of oncogenic signaling. In colon cancer it positively modulates WNT-TCF signaling and behaves as a metastatic suppressor, with its knockdown increasing metastatic growth (PMID:24920608); this WNT-TCF–promoting activity is opposed by TMED9, which is upregulated upon TMED3 loss and drives a pro-metastatic CNIH4/TGFα/GLI axis, defining a TMED3→TMED9 antagonism that balances WNT-TCF and GLI signaling (PMID:31253868). In ovarian cancer, TMED3 stabilizes SMAD2 by counteracting NEDD4 E3 ligase-mediated ubiquitination (PMID:38411267). The literature places TMED3 upstream of multiple downstream effectors, but most of these connections rest on lower-confidence transcriptomic and epistatic studies in individual tumor types; the precise biochemical mechanism by which TMED3 engages these signaling pathways has not been resolved in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2014 Medium

    Established that TMED3 is a functional modulator of WNT-TCF signaling and, unexpectedly, a suppressor of metastasis rather than a generic oncogene.

    Evidence Genome-wide in vivo RNAi screen in primary human colon tumor cells with WNT-TCF reporter assays and xenografts

    PMID:24920608

    Open questions at the time
    • No direct biochemical mechanism linking TMED3 to WNT-TCF components
    • Metastatic suppression shown in xenografts but not in autochthonous models
  2. 2016 Low

    Extended TMED3 function to hepatocellular carcinoma, where it appeared to act as a pro-metastatic factor via IL-11/STAT3 signaling, hinting at tissue-context-dependent roles.

    Evidence Gene microarray of TMED3-knockdown HCC cells with overexpression/knockdown functional assays and in vivo metastasis models

    PMID:27901021

    Open questions at the time
    • IL-11/STAT3 link inferred from microarray without direct mechanistic confirmation
    • Opposite directionality from colon cancer not reconciled mechanistically
  3. 2019 Medium

    Resolved the epistatic relationship between TMED3 and its paralog TMED9, showing antagonistic control of WNT-TCF versus a CNIH4/TGFα/GLI pro-metastatic axis.

    Evidence RNAi knockdown with transcriptional rescue and migration assays in three colon cancer lines plus xenografts

    PMID:31253868

    Open questions at the time
    • Molecular basis of TMED3-TMED9 antagonism not defined
    • How TMED3 loss upregulates TMED9 is unknown
  4. 2019 Medium

    Placed TMED3 downstream of miR-876-3p in controlling chemoresistance and stem-like properties, establishing a regulatory input on TMED3 expression.

    Evidence Luciferase reporter and biotin-miRNA pulldown confirming direct targeting, with siRNA functional rescue in gastric cancer cells

    PMID:30843262

    Open questions at the time
    • Effector mechanism downstream of TMED3 in this axis not defined
    • Single cancer-type context
  5. 2020 Low

    Associated TMED3 with Wnt/β-catenin pathway activation in breast cancer, broadening its signaling connections beyond colon WNT-TCF.

    Evidence Overexpression/knockdown assays with Western blot and immunofluorescence of Wnt/β-catenin components

    PMID:32606792

    Open questions at the time
    • Pathway association by protein expression without direct mechanistic dissection
    • No demonstrated physical interaction
  6. 2021 Low

    A series of tumor-specific studies positioned TMED3 upstream of diverse downstream effectors (EZR, RPS15A, AKT, pro-survival nodes, lncRNA/miR axes) across multiple cancers.

    Evidence Transcriptomic profiling, apoptosis/protein arrays, and epistatic rescue across LUSC, osteosarcoma, NSCLC, chordoma, and breast cancer with xenografts

    PMID:33760171 PMID:34130584 PMID:34429402 PMID:34758370 PMID:34838013

    Open questions at the time
    • Downstream targets identified largely by transcriptomic screens with partial rescue
    • No direct biochemical interactions established for most effectors
    • Pathway mechanisms inferred via inhibitors rather than reconstitution
  7. 2022 High

    Defined the core molecular function of TMED3: recognition of ER core-glycosylated transmembrane cargos and assembly into a TMED2/3/9/10 complex driving Golgi-independent unconventional secretion.

    Evidence Combinatorial siRNA silencing, ΔF508-CFTR and pendrin ion-transport assays, SARS-CoV-2 release assay, and co-expression studies

    PMID:35748162

    Open questions at the time
    • Structural basis of cargo recognition not resolved
    • Stoichiometry and assembly order of the TMED2/3/9/10 complex unknown
    • Link between this trafficking function and cancer signaling roles not established
  8. 2022 Low

    Identified FAM60A as a downstream gene mediating TMED3 pro-tumorigenic effects in esophageal squamous cell carcinoma.

    Evidence Affymetrix microarray and IPA with FAM60A knockdown rescue in vitro and in vivo

    PMID:35358714

    Open questions at the time
    • Downstream target identified by transcriptomics with partial rescue
    • No direct mechanistic link from TMED3 to FAM60A
  9. 2023 Low

    Reported a physical interaction between TMED3 and CDCA8 placing TMED3 upstream of PI3K/AKT signaling in melanoma.

    Evidence Interaction assay with CDCA8 and AKT-activator (SC79) rescue plus Western blot for PI3K/AKT phosphorylation

    PMID:36991473

    Open questions at the time
    • Single Co-IP/pulldown without reciprocal validation
    • Mechanism by which the interaction modulates PI3K/AKT not defined
  10. 2024 Medium

    Provided a more concrete biochemical mechanism: TMED3 stabilizes SMAD2 by antagonizing NEDD4-mediated ubiquitination in ovarian cancer.

    Evidence shRNA knockdown, SMAD2 functional rescue, and ubiquitination assays with xenografts

    PMID:38411267

    Open questions at the time
    • Ubiquitination assay methodology not detailed
    • Whether TMED3 directly binds SMAD2 or NEDD4 not shown
  11. 2024 Low

    Linked TMED3 activity to FOXO1a/FOXO3a phosphorylation in prostate cancer, extending its signaling footprint.

    Evidence shRNA knockdown with KEGG enrichment and Western blot for FOXO phosphorylation in vitro and in vivo

    PMID:39735675

    Open questions at the time
    • Direct biochemical mechanism linking TMED3 to FOXO phosphorylation not established
    • No identified kinase intermediary

Open questions

Synthesis pass · forward-looking unresolved questions
  • How TMED3's core ER-to-Golgi cargo-trafficking and unconventional-secretion function mechanistically connects to its diverse, often opposing, roles in cancer signaling remains unresolved.
  • No unifying model reconciling metastatic-suppressor versus pro-tumorigenic phenotypes across tissues
  • Whether cancer signaling effects derive from cargo trafficking is untested
  • Structural and stoichiometric details of the TMED2/3/9/10 complex unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0038024 cargo receptor activity 1
Localization
GO:0005783 endoplasmic reticulum 1 GO:0005794 Golgi apparatus 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 1 R-HSA-9609507 Protein localization 1
Complex memberships
TMED2/3/9/10 complex

Evidence

Reading pass · 15 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 TMED3 knockdown in human colon cancer cells reduces endogenous WNT-TCF signaling activity, identifying TMED3 as a positive modulator of the WNT-TCF pathway; in vivo genome-wide RNAi screen showed TMED3 knockdown increases metastatic growth and induces lung metastases from subcutaneous xenografts, establishing TMED3 as a metastatic suppressor functioning through WNT-TCF promotion. Genome-wide in vivo RNAi screen in primary human tumor cells in mice; WNT-TCF reporter assays; xenograft models EMBO molecular medicine Medium 24920608
2019 TMED3 knockdown leads to enhanced expression of TMED9; TMED9 acts downstream of TMED3 and opposes TMED3-WNT-TCF signaling. TMED9 promotes colon cancer metastasis via TGFα secretion and CNIH4 (a TGFα exporter), and TMED9 knockdown compromises TGFα biogenesis. TMED9/TMED3 antagonism modulates both WNT-TCF and GLI signaling, establishing a TMED3→TMED9→CNIH4/TGFα/GLI pro-metastatic axis opposing TMED3-WNT-TCF. RNAi knockdown, transcriptional rescue assays, gene expression analysis in three colon cancer cell lines, functional migration assays, in vivo xenograft models Oncogene Medium 31253868
2016 TMED3 promotes hepatocellular carcinoma (HCC) metastasis through IL-11/STAT3 signaling; gene microarray of TMED3-knockdown cells revealed decreased IL-11 expression, and TMED3 overexpression promoted cell migration and invasion, which was suppressed by TMED3 knockdown both in vitro and in vivo. Gene microarray analysis of TMED3-knockdown HCC cells; overexpression and knockdown functional assays; in vivo metastasis models Scientific reports Low 27901021
2022 TMED3 recognizes ER core-glycosylated transmembrane protein cargos and, as part of a heteromeric TMED2/3/9/10 complex, mediates ER stress-associated unconventional protein secretion (UPS) of transmembrane proteins including CFTR, pendrin, and SARS-CoV-2 Spike via a Golgi-independent pathway. Co-expression of all four TMEDs improves UPS, while individual silencing reduces it. Gene silencing (siRNA) of individual and combined TMED family members; functional ion transport assays for ΔF508-CFTR and p.H723R-pendrin; SARS-CoV-2 viral release assay; mechanistic co-expression studies Advanced science (Weinheim, Baden-Wurttemberg, Germany) High 35748162
2019 miR-876-3p directly targets TMED3 (confirmed by luciferase reporter and biotin-miRNA pulldown assay); TMED3 siRNA mimics miR-876-3p's inhibitory effects on cisplatin resistance and stem cell-like properties (Sox-2, Oct-4, CD133, CD44 expression) in gastric cancer cells, placing TMED3 downstream of miR-876-3p in regulating drug resistance. TargetScan prediction; luciferase reporter assay; biotin-miRNA pulldown assay; siRNA knockdown functional rescue Journal of gastroenterology and hepatology Medium 30843262
2021 TMED3 promotes lung squamous cell carcinoma (LUSC) progression by regulating EZR (Ezrin); RNA sequencing and IPA identified EZR as a downstream target; EZR inhibition suppresses LUSC progression and reduces the promoting effects of TMED3 overexpression, and TMED3 knockdown inhibits cell migration through regulation of EMT. RNA sequencing; Ingenuity Pathway Analysis; loss-of-function assays; EZR overexpression rescue experiments; xenograft mouse model Cell death & disease Low 34429402
2021 TMED3 promotes osteosarcoma progression via RPS15A (ribosomal protein S15A) as a downstream target; simultaneous knockdown of both TMED3 and RPS15A intensified inhibitory effects, and RPS15A knockdown reversed the pro-tumorigenic effects of TMED3 overexpression. Gene expression profile analysis; loss-of-function assays; epistatic rescue by RPS15A knockdown/TMED3 overexpression combination; xenograft tumor model Cancer cell international Low 34838013
2020 TMED3 promotes proliferation and migration of breast cancer cells through activation of Wnt/β-catenin signaling; immunofluorescence and Western blot showed TMED3 modulates expression of Wnt/β-catenin pathway proteins and cell cycle/migration-related proteins. Overexpression and knockdown functional assays; Western blot and immunofluorescence of Wnt/β-catenin pathway components; cell cycle analysis; in vitro proliferation/migration/invasion assays OncoTargets and therapy Low 32606792
2021 TMED3 knockdown in chordoma cells reduces expression of Bcl-2, HSP27, IGF-I, IGF-II, IGFBP-2, Livin, Akt, CDK6, and cyclin D1, while upregulating MAPK9; these changes accompany inhibition of cell viability and migration and enhanced apoptosis, linking TMED3 to pro-survival signaling nodes. Apoptosis antibody array; Western blot; RT-qPCR; in vitro functional assays; xenograft model International journal of oncology Low 33760171
2021 In breast cancer, the lncRNA RP11-283G6.5 acts upstream of miR-188-3p/TMED3/Wnt/β-catenin signaling; overexpression of TMED3 or inhibition of miR-188-3p rescued the suppressive effects of RP11-283G6.5, placing TMED3 as a direct downstream effector of miR-188-3p and upstream of Wnt/β-catenin signaling in this axis. Luciferase reporter assay; RNA pulldown; functional rescue experiments (miR-188-3p inhibition, TMED3 overexpression); in vivo xenograft RNA biology Low 34130584
2021 TMED3 promotes NSCLC progression by enhancing Wnt/β-catenin signaling through modulation of AKT; TMED3 silencing reduced AKT activity and Wnt/β-catenin pathway activity, AKT inhibition blocked TMED3-overexpression-mediated Wnt/β-catenin enhancement, and Wnt/β-catenin inhibition reversed TMED3 overexpression effects on proliferation/invasion. Knockdown and overexpression; AKT inhibitor treatment; Wnt/β-catenin inhibitor treatment; epistatic rescue experiments; in vivo xenograft Toxicology and applied pharmacology Low 34758370
2023 TMED3 interacts with CDCA8 (Cell division cycle associated 8) in melanoma cells; CDCA8 overexpression reversed the inhibitory effects of TMED3 knockdown on cell viability and motility, and TMED3 knockdown decreased P-AKT and P-PI3K levels which were rescued by CDCA8 overexpression, placing TMED3 upstream of CDCA8 and PI3K/AKT signaling in melanoma. Co-immunoprecipitation or pulldown (interaction); CDCA8 knockdown/overexpression rescue; SC79 (AKT activator) rescue; Western blot for PI3K/AKT phosphorylation; in vitro and in vivo functional assays Cell & bioscience Low 36991473
2024 TMED3 promotes prostate cancer progression via phosphorylation of FOXO1a and FOXO3a; TMED3 inhibition decreased FOXO1a and FOXO3a phosphorylation both in vitro and in vivo, linking TMED3 activity to FOXO pathway suppression. shRNA knockdown; KEGG pathway enrichment analysis; Western blot for FOXO1a/FOXO3a phosphorylation; in vivo prostate cancer mouse model Oncology research Low 39735675
2024 TMED3 stabilizes SMAD2 by inhibiting NEDD4 E3 ligase-mediated ubiquitination of SMAD2 in ovarian cancer; SMAD2 knockdown reversed TMED3 overexpression effects on cancer cells; PI3K-AKT pathway was also involved in TMED3-mediated ovarian cancer promotion. shRNA knockdown; functional rescue experiments (SMAD2 knockdown in TMED3-overexpressing cells); ubiquitination assay (implied); Western blot; subcutaneous xenograft model Molecular carcinogenesis Medium 38411267
2022 TMED3 knockdown in esophageal squamous cell carcinoma cells alters gene expression profile; FAM60A was identified as a functionally related downstream gene, and FAM60A knockdown reversed TMED3's pro-tumorigenic effects, placing FAM60A downstream of TMED3. Affymetrix microarray; IPA; FAM60A knockdown rescue experiments; in vitro and in vivo functional assays Biomedical journal Low 35358714

Source papers

Stage 0 corpus · 19 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 A novel genome-wide in vivo screen for metastatic suppressors in human colon cancer identifies the positive WNT-TCF pathway modulators TMED3 and SOX12. EMBO molecular medicine 73 24920608
2016 TMED3 promotes hepatocellular carcinoma progression via IL-11/STAT3 signaling. Scientific reports 58 27901021
2012 High-throughput transcriptomic and RNAi analysis identifies AIM1, ERGIC1, TMED3 and TPX2 as potential drug targets in prostate cancer. PloS one 56 22761906
2019 MiR-876-3p regulates cisplatin resistance and stem cell-like properties of gastric cancer cells by targeting TMED3. Journal of gastroenterology and hepatology 49 30843262
2019 The protein secretion modulator TMED9 drives CNIH4/TGFα/GLI signaling opposing TMED3-WNT-TCF to promote colon cancer metastases. Oncogene 49 31253868
2019 TMED3 promotes cell proliferation and motility in breast cancer and is negatively modulated by miR-188-3p. Cancer cell international 39 30976199
2020 TMED3 Promotes Proliferation and Migration in Breast Cancer Cells by Activating Wnt/β-Catenin Signaling. OncoTargets and therapy 26 32606792
2022 TMED3 Complex Mediates ER Stress-Associated Secretion of CFTR, Pendrin, and SARS-CoV-2 Spike. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 22 35748162
2021 TMED3 promotes the progression and development of lung squamous cell carcinoma by regulating EZR. Cell death & disease 17 34429402
2021 Knockdown of TMED3 inhibits cell viability and migration and increases apoptosis in human chordoma cells. International journal of oncology 15 33760171
2021 Long non-coding RNA RP11-283G6.5 confines breast cancer development through modulating miR-188-3p/TMED3/Wnt/β-catenin signalling. RNA biology 15 34130584
2021 TMED3/RPS15A Axis promotes the development and progression of osteosarcoma. Cancer cell international 15 34838013
2021 TMED3 exerts a protumor function in non-small cell lung cancer by enhancing the Wnt/β-catenin pathway via regulation of AKT. Toxicology and applied pharmacology 10 34758370
2023 TMED3 promotes the development of malignant melanoma by targeting CDCA8 and regulating PI3K/Akt pathway. Cell & bioscience 9 36991473
2022 Trafficking protein TMED3 promotes esophageal squamous cell carcinoma. Biomedical journal 5 35358714
2022 Circ_0108942 Regulates the Progression of Breast Cancer by Regulating the MiR-1178-3p/TMED3 Axis. Clinical breast cancer 5 36764873
2022 Depleting TMED3 alleviates the development of endometrial carcinoma. Cancer cell international 3 35854294
2024 TMED3 promotes prostate cancer via FOXO1a and FOXO3a phosphorylation. Oncology research 2 39735675
2024 TMED3 stabilizes SMAD2 by counteracting NEDD4-mediated ubiquitination to promote ovarian cancer. Molecular carcinogenesis 1 38411267

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